ClCG09G015600 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G015600
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	CG_Chr09 : 30348898 .. 30349412 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGCATTGAGGAAGTAGTTGGAATGTTTTTGGTCACAATATCTCATAGCACACGTAATAGAATTGTAGCTGAATGATTTCAACACTCCAAGGAGACTGTGTCTTGACAATTTTCTAGAGTTTTAAGAGCTATATGTATGTTGGGATGTAATGTTATTCGAGCTCCAAATATGATGGAAACTCCACCTGAAATTTTGAATAATCCTAAATTTAATCCATGGTTCAAGGTACGTGTCTTATCGATATTTTGCATTTATAGTTTATTGTTTTCATGTTATTGTCAACTTCTCTTTCTTCCCTTTAGAATTGTATAGGTGTAATTGATGAAACTCATGTAAGTATGTGGGCCCCTACATCAAAACAAACCCCATATCCTGGAAGAAAGGTTATAGTGATCCAAAATATTATGTGTGCATGCTCATTCAATATGTTGTTCACCTTTGTCTACACTGGTGGGAAGGTACTGCTAATGGCTCGTAATGATGGGTGCTATCAGTCGGGAAGGAAATAA

mRNA sequence

ATGGGTAGCATTGAGGAAGTAGTTGGAATGTTTTTGGTCACAATATCTCATAGCACACTTTTAAGAGCTATATGTATGTTGGGATGTAATGTTATTCGAGCTCCAAATATGATGGAAACTCCACCTGAAATTTTGAATAATCCTAAATTTAATCCATGGTTCAAGAATTGTATAGGTGTAATTGATGAAACTCATGTAAGTATGTGGGCCCCTACATCAAAACAAACCCCATATCCTGGAAGAAAGGTTATAGTGATCCAAAATATTATGTGTGCATGCTCATTCAATATGTTGTTCACCTTTGTCTACACTGGTGGGAAGGTACTGCTAATGGCTCGTAATGATGGGTGCTATCAGTCGGGAAGGAAATAA

Coding sequence (CDS)

ATGGGTAGCATTGAGGAAGTAGTTGGAATGTTTTTGGTCACAATATCTCATAGCACACTTTTAAGAGCTATATGTATGTTGGGATGTAATGTTATTCGAGCTCCAAATATGATGGAAACTCCACCTGAAATTTTGAATAATCCTAAATTTAATCCATGGTTCAAGAATTGTATAGGTGTAATTGATGAAACTCATGTAAGTATGTGGGCCCCTACATCAAAACAAACCCCATATCCTGGAAGAAAGGTTATAGTGATCCAAAATATTATGTGTGCATGCTCATTCAATATGTTGTTCACCTTTGTCTACACTGGTGGGAAGGTACTGCTAATGGCTCGTAATGATGGGTGCTATCAGTCGGGAAGGAAATAA

Protein sequence

MGSIEEVVGMFLVTISHSTLLRAICMLGCNVIRAPNMMETPPEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFTFVYTGGKVLLMARNDGCYQSGRK

Homology

[Close]

BLAST of ClCG09G015600 vs. TrEMBL
Match: M5XH46_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018234mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 20  LLRAICMLGCNVIRAPNMMETPPEILNNPKFNPWFK--NCIGVIDETHVSMWAPTSKQTP 79
           +L+AIC LG  +I+ PN+  TPP+I+ NP ++ WFK  +CIG ID TH+S WAPTSKQ P
Sbjct: 124 ILKAICQLGTPIIQPPNLDVTPPKIMENPNYHLWFKINDCIGAIDGTHISAWAPTSKQIP 183

Query: 80  YPGRKVIVIQNIMCACSFNMLFTFVYTG 106
           Y GRK+ V QNIMCA SFNMLF +VYTG
Sbjct: 184 YRGRKIKVTQNIMCAYSFNMLFIYVYTG 211

[Close]

BLAST of ClCG09G015600 vs. TrEMBL
Match: M5W175_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016395mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-24
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 1


Query: 5   EEVVGMFLVTISHSTLLR----------------------AICMLGCNVIRAPNMMETPP 64
           +E V +FL  +SH+  +R                      A+C L   +I   +  ETPP
Sbjct: 85  QEAVHIFLFIVSHNIRMRVEAERFQRSKDTIHRQFKHVLTALCGLSPCIICPSSKGETPP 144

Query: 65  EILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFTFV 106
           EILNNPK+ P+F+ CIG ID THV+ WAP  KQT Y GRKV++ QN+MCACSF M+FTFV
Sbjct: 145 EILNNPKYYPYFEKCIGTIDGTHVAAWAPAQKQTSYHGRKVLITQNVMCACSFGMMFTFV 204

[Close]

BLAST of ClCG09G015600 vs. TrEMBL
Match: A0A0R0LJV4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G182800 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 3   SIEEVVGMFLVTISHST----------------------LLRAICMLGCNVIRAPNMMET 62
           SIEE V MFL+ I H+                       +L+A+C LG ++I   N   T
Sbjct: 49  SIEEAVAMFLIIICHNLRHRVVAEQFQHSLHMVSKWFRIILKAVCKLGTSIIHQRNQTST 108

Query: 63  PPEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFT 106
            P I +NPK+ P+FK+CIG ID THVS WAP SKQT + GRKV+V QN++  C F++LFT
Sbjct: 109 HPHIRDNPKYYPYFKDCIGAIDGTHVSAWAPASKQTAFHGRKVLVTQNVLAMCDFDVLFT 168

[Close]

BLAST of ClCG09G015600 vs. TrEMBL
Match: A0A0B2SJL0_GLYSO (Putative nuclease HARBI1 (Fragment) OS=Glycine soja GN=glysoja_043532 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-22
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 1


Query: 3   SIEEVVGMFLVTISHST----------------------LLRAICMLGCNVIRAPNMMET 62
           SI+E + MFL+ I H+                       +L+A+C LG N+I   N   T
Sbjct: 59  SIKEAIAMFLIIICHNLRHRVVAERFQHSLHTVSKWFRIILKAVCKLGTNIIHQRNQTST 118

Query: 63  PPEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFT 106
            P I  NPK+ P+FK+CIG ID  HVS WA  SKQ  + GRKV+V QN++  C F+MLFT
Sbjct: 119 HPHIRGNPKYYPYFKDCIGAIDGMHVSAWASASKQAAFRGRKVLVTQNVLVVCDFDMLFT 178

[Close]

BLAST of ClCG09G015600 vs. TrEMBL
Match: A5B642_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043096 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 3   SIEEVVGMFLVTISHSTLLR----------------------AICMLGCNVIRAPNMM-- 62
           ++EE + MFL+ + H+  +R                      A+C LG  ++  PN M  
Sbjct: 263 TVEEAMTMFLLIVGHNVRMRVVVDCFQHSTETVARHFKEVRRALCRLG-KILICPNNMTN 322

Query: 63  ETPPEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNML 106
           E      +NPK+ PWFK+CIG ID+TH+S W    +QT + GRK ++ QN+MCAC F+M+
Sbjct: 323 EVSSYFSSNPKYFPWFKDCIGAIDDTHISAWDSADRQTSFRGRKTVITQNVMCACDFDMM 382

[Close]

BLAST of ClCG09G015600 vs. TAIR10
Match: AT5G28950.1 (AT5G28950.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-08
Identity = 22/65 (33.85%), Postives = 37/65 (56.92%), Query Frame = 1


Query: 41  PPEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFT 100
           P +I  + +  P+FK+C+G ID+TH+       K   +  RK  + QN++ AC+F++ F 
Sbjct: 9   PRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFM 68

Query: 101 FVYTG 106
           +V +G
Sbjct: 69  YVLSG 73

[Close]

BLAST of ClCG09G015600 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 35/123 (28.46%), Postives = 56/123 (45.53%), Query Frame = 1


Query: 4   IEEVVGMFLVTISHSTLLRAICMLGC-----------NVIRA----------PNMMETPP 63
           IE  + +FL  I H+   RA+  L C           NV+ A          PN   +  
Sbjct: 74  IEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPN---SNS 133

Query: 64  EILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFTFV 106
           + L N   +P+FK+C+GV+D  H+ +     +Q P+     ++ QN++ A SF++ F +V
Sbjct: 134 DTLEND--DPYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYV 191

[Close]

BLAST of ClCG09G015600 vs. NCBI nr
Match: gi|694386831|ref|XP_009369186.1| (PREDICTED: uncharacterized protein LOC103958625 [Pyrus x bretschneideri])

HSP 1 Score: 135.6 bits (340), Expect = 6.0e-29
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 1


Query: 4   IEEVVGMFLVTISHST----------------------LLRAICMLGCNVIRAPNMMETP 63
           +EE V MFL TISH+                       +L+AIC LG  +I+ PNM  TP
Sbjct: 54  VEEAVCMFLFTISHTIRNRVIAETFQHSKETVSRQFNRVLKAICRLGTRIIQPPNMDATP 113

Query: 64  PEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFTF 106
            EIL NPK++PWF+NCIG ID TH+S W P+SKQ  Y GRKV V QNIM ACSFNM+FT+
Sbjct: 114 SEILGNPKYDPWFQNCIGAIDGTHISAWVPSSKQISYRGRKVSVTQNIMLACSFNMMFTY 173

[Close]

BLAST of ClCG09G015600 vs. NCBI nr
Match: gi|657956428|ref|XP_008369695.1| (PREDICTED: uncharacterized protein LOC103433238 [Malus domestica])

HSP 1 Score: 131.7 bits (330), Expect = 8.6e-28
Identity = 66/123 (53.66%), Postives = 79/123 (64.23%), Query Frame = 1


Query: 4   IEEVVGMFLVTISHST----------------------LLRAICMLGCNVIRAPNMMETP 63
           +EE V MFL TISH+                       +L+AIC LG  +I+  NM  TP
Sbjct: 178 VEEAVCMFLFTISHTIRNRVIAEXFQHSKETXSXQFNRVLKAICRLGTRIIQPXNMDXTP 237

Query: 64  PEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFTF 105
            EIL NPK++PWF+NCIG ID TH+S WAP+SKQ  Y GRKV V QNIM ACSFNM+FT+
Sbjct: 238 SEILGNPKYDPWFQNCIGAIDGTHISAWAPSSKQISYRGRKVSVTQNIMLACSFNMMFTY 297

[Close]

BLAST of ClCG09G015600 vs. NCBI nr
Match: gi|645306253|ref|XP_008246058.1| (PREDICTED: uncharacterized protein LOC103344213, partial [Prunus mume])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 4   IEEVVGMFLVTISHSTLLR----------------------AICMLGCNVIRAPNMMETP 63
           I+E VG+FL  +SHS  +R                      A+C L   +IR  +  ETP
Sbjct: 99  IQEAVGIFLFIVSHSIRMRVAAERFQRSKDTIHRQFKRVLTALCGLSPRIIRPSSRGETP 158

Query: 64  PEILNNPKFNPWFKNCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLFTF 106
           PEILN+PK+ P+F+ CIG ID THV+ WAP  KQT Y GRKV++ QN+MCACSF+M+FTF
Sbjct: 159 PEILNSPKYYPYFEKCIGAIDGTHVAAWAPAQKQTSYRGRKVLITQNVMCACSFDMMFTF 218

[Close]

BLAST of ClCG09G015600 vs. NCBI nr
Match: gi|645264129|ref|XP_008237544.1| (PREDICTED: uncharacterized protein LOC103336277 [Prunus mume])

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-26
Identity = 62/126 (49.21%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 4   IEEVVGMFLVTISHST----------------------LLRAICMLGCNVIRAPNMMETP 63
           +EE + MFL  I H+T                      +L+AIC  G  +I+ PNM  TP
Sbjct: 110 VEESMCMFLRIIGHTTRNRMDAEKFQHSKETVSRQFNRVLKAICRFGTQIIQPPNMDMTP 169

Query: 64  PEILNNPKFNPWFK--NCIGVIDETHVSMWAPTSKQTPYPGRKVIVIQNIMCACSFNMLF 106
           P+I+ NP ++ WFK  +CIG ID TH++ WAP SKQ PY GRK+ V QNIMCACSF+MLF
Sbjct: 170 PKIMGNPNYHSWFKKNDCIGAIDATHINAWAPASKQIPYRGRKIEVTQNIMCACSFDMLF 229

[Close]

BLAST of ClCG09G015600 vs. NCBI nr
Match: gi|596227989|ref|XP_007224233.1| (hypothetical protein PRUPE_ppa018234mg [Prunus persica])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 20  LLRAICMLGCNVIRAPNMMETPPEILNNPKFNPWFK--NCIGVIDETHVSMWAPTSKQTP 79
           +L+AIC LG  +I+ PN+  TPP+I+ NP ++ WFK  +CIG ID TH+S WAPTSKQ P
Sbjct: 124 ILKAICQLGTPIIQPPNLDVTPPKIMENPNYHLWFKINDCIGAIDGTHISAWAPTSKQIP 183

Query: 80  YPGRKVIVIQNIMCACSFNMLFTFVYTG 106
           Y GRK+ V QNIMCA SFNMLF +VYTG
Sbjct: 184 YRGRKIKVTQNIMCAYSFNMLFIYVYTG 211

The following BLAST results are available for this feature:

BLAST of ClCG09G015600 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XH46_PRUPE	1.1e-24	62.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018234mg PE=4 SV=1	[more]
M5W175_PRUPE	3.1e-24	47.97	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016395mg PE=4 SV=1	[more]
A0A0R0LJV4_SOYBN	5.3e-24	46.40	Uncharacterized protein OS=Glycine max GN=GLYMA_01G182800 PE=4 SV=1	[more]
A0A0B2SJL0_GLYSO	3.8e-22	44.00	Putative nuclease HARBI1 (Fragment) OS=Glycine soja GN=glysoja_043532 PE=4 SV=1	[more]
A5B642_VITVI	1.8e-19	39.37	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043096 PE=4 SV=1	[more]

BLAST of ClCG09G015600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28950.1	6.2e-08	33.85	unknown protein	[more]
AT5G41980.1	1.8e-07	28.46	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]

BLAST of ClCG09G015600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|694386831\|ref\|XP_009369186.1\|	6.0e-29	54.03	PREDICTED: uncharacterized protein LOC103958625 [Pyrus x bretschneideri]	[more]
gi\|657956428\|ref\|XP_008369695.1\|	8.6e-28	53.66	PREDICTED: uncharacterized protein LOC103433238 [Malus domestica]	[more]
gi\|645306253\|ref\|XP_008246058.1\|	1.2e-26	50.00	PREDICTED: uncharacterized protein LOC103344213, partial [Prunus mume]	[more]
gi\|645264129\|ref\|XP_008237544.1\|	8.1e-26	49.21	PREDICTED: uncharacterized protein LOC103336277 [Prunus mume]	[more]
gi\|596227989\|ref\|XP_007224233.1\|	1.5e-24	62.50	hypothetical protein PRUPE_ppa018234mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G015600.1	ClCG09G015600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 3..105 score: 1.1
None	No IPR available	PANTHER	PTHR22930:SF27	SUBFAMILY NOT NAMED	coord: 3..105 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G015600	Wax gourd	wcgwgoB033
ClCG09G015600	Cucumber (Gy14) v1	cgywcgB391
ClCG09G015600	Cucurbita maxima (Rimu)	cmawcgB075
ClCG09G015600	Cucurbita maxima (Rimu)	cmawcgB442
ClCG09G015600	Cucurbita moschata (Rifu)	cmowcgB072
ClCG09G015600	Cucurbita moschata (Rifu)	cmowcgB441
ClCG09G015600	Wild cucumber (PI 183967)	cpiwcgB541
ClCG09G015600	Cucumber (Chinese Long) v2	cuwcgB514
ClCG09G015600	Melon (DHL92) v3.5.1	mewcgB176
ClCG09G015600	Watermelon (97103) v1	wcgwmB009
ClCG09G015600	Cucurbita pepo (Zucchini)	cpewcgB218
ClCG09G015600	Cucurbita pepo (Zucchini)	cpewcgB578
ClCG09G015600	Bottle gourd (USVL1VR-Ls)	lsiwcgB215
ClCG09G015600	Cucumber (Gy14) v2	cgybwcgB473
ClCG09G015600	Melon (DHL92) v3.6.1	medwcgB171
ClCG09G015600	Silver-seed gourd	carwcgB0281
ClCG09G015600	Silver-seed gourd	carwcgB0363
ClCG09G015600	Cucumber (Chinese Long) v3	cucwcgB535
ClCG09G015600	Watermelon (97103) v2	wcgwmbB035