ClCG09G014990 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G014990
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Laccase-like protein
Location	CG_Chr09 : 28088623 .. 28088936 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGCCAAAGAATGCAAAAAGAAGAGGTGGAGAAGCAATACTTTCAGATGCCTACACCATCAATGGCCAACCAGGATATCTCTATCCATGTTCCAAACAAGGGACAAAATCTTTAATTCAAATTTCCTATCCATGCAATTCTTCAATTTTTTTAAAGTAATAATAATCTTACTTCATTTGCTTATGATTTTCAAATTTCATTGTTGAGTGTATATATTTGCTCTTACATGTTTTTTTTTTTCTTTTTTTTTTTTTAGCTCTTTCTCATTCTTTGATTTCTTTTTGATATTTGACATTTATTTTTCATAA

mRNA sequence

ATGGAAATGCCAAAGAATGCAAAAAGAAGAGGTGGAGAAGCAATACTTTCAGATGCCTACACCATCAATGGCCAACCAGGATATCTCTATCCATGTTCCAAACAAGGGACAAAATCTTTAATTCAAATTTCCTATCCATGCAATTCTTCAATTTTTTTAAACTCTTTCTCATTCTTTGATTTCTTTTTGATATTTGACATTTATTTTTCATAA

Coding sequence (CDS)

ATGGAAATGCCAAAGAATGCAAAAAGAAGAGGTGGAGAAGCAATACTTTCAGATGCCTACACCATCAATGGCCAACCAGGATATCTCTATCCATGTTCCAAACAAGGGACAAAATCTTTAATTCAAATTTCCTATCCATGCAATTCTTCAATTTTTTTAAACTCTTTCTCATTCTTTGATTTCTTTTTGATATTTGACATTTATTTTTCATAA

Protein sequence

MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGTKSLIQISYPCNSSIFLNSFSFFDFFLIFDIYFS

Homology

[Close]

BLAST of ClCG09G014990 vs. Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-07
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           M +P  A + GGE  +SD+YTINGQPGYLYPCSK  T
Sbjct: 183 MHIPGKANKTGGEPAISDSYTINGQPGYLYPCSKPET 219

[Close]

BLAST of ClCG09G014990 vs. TrEMBL
Match: V4L0B3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002968mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-07
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGTKSLIQISYPCNSSIFLNS 56
           M++P+NAK+ GGE  +SDAYTINGQPGYL PCSK G       S+P +SS    S
Sbjct: 150 MDIPENAKKTGGEPAISDAYTINGQPGYLNPCSKPGK------SHPASSSFLFIS 198

[Close]

BLAST of ClCG09G014990 vs. TrEMBL
Match: V4LB16_EUTSA (Laccase OS=Eutrema salsugineum GN=EUTSA_v10015612mg PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-07
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           M++P+NAK+ GGE  +SDAYTINGQPG+LYPCSK  T
Sbjct: 182 MDIPENAKKTGGEPAISDAYTINGQPGFLYPCSKPDT 218

[Close]

BLAST of ClCG09G014990 vs. TrEMBL
Match: M5Y906_PRUPE (Laccase OS=Prunus persica GN=PRUPE_ppa016865mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-07
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQG 37
           ME+P+NA   GGE ILSDAYTING+PG+LYPCSK G
Sbjct: 173 MEIPRNANITGGEPILSDAYTINGKPGHLYPCSKSG 208

[Close]

BLAST of ClCG09G014990 vs. TrEMBL
Match: G7ILB5_MEDTR (Laccase OS=Medicago truncatula GN=MTR_2g008330 PE=3 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-07
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGTKSLI 42
           ME+P  A + GGE ILS+AYTINGQPGYLYPCSK+ T  +I
Sbjct: 184 MEIPNVANKTGGEPILSNAYTINGQPGYLYPCSKKDTFKMI 224

[Close]

BLAST of ClCG09G014990 vs. TrEMBL
Match: A0A022PRX8_ERYGU (Laccase OS=Erythranthe guttata GN=MIMGU_mgv1a019066mg PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-07
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           ME+ +NA + GGE ILSDAYTINGQPG LYPCSKQ T
Sbjct: 166 MEIEENANKTGGEPILSDAYTINGQPGDLYPCSKQET 202

[Close]

BLAST of ClCG09G014990 vs. TAIR10
Match: AT5G09360.1 (AT5G09360.1 laccase 14)

HSP 1 Score: 56.6 bits (135), Expect = 7.1e-09
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           M +P  A + GGE  +SD+YTINGQPGYLYPCSK  T
Sbjct: 183 MHIPGKANKTGGEPAISDSYTINGQPGYLYPCSKPET 219

[Close]

BLAST of ClCG09G014990 vs. TAIR10
Match: AT2G30210.1 (AT2G30210.1 laccase 3)

HSP 1 Score: 46.6 bits (109), Expect = 7.3e-06
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           M++ K A+  G  A +SDAYTINGQPG LY CS+ GT
Sbjct: 174 MDVLKQAQFTGAAANVSDAYTINGQPGDLYRCSRAGT 210

[Close]

BLAST of ClCG09G014990 vs. NCBI nr
Match: gi|659111019|ref|XP_008455534.1| (PREDICTED: laccase-14 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-09
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           ME+PKNAK+ GGE +LS+AYTINGQPGYLYPCSKQ T
Sbjct: 169 MEIPKNAKKSGGEPLLSNAYTINGQPGYLYPCSKQET 205

[Close]

BLAST of ClCG09G014990 vs. NCBI nr
Match: gi|449438540|ref|XP_004137046.1| (PREDICTED: laccase-14 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 6.7e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           ME+PKNA R GGE +LS+AYTINGQPGYLYPCSKQ T
Sbjct: 180 MEIPKNANRSGGEPLLSNAYTINGQPGYLYPCSKQET 216

[Close]

BLAST of ClCG09G014990 vs. NCBI nr
Match: gi|1009151145|ref|XP_015893395.1| (PREDICTED: LOW QUALITY PROTEIN: laccase-14-like [Ziziphus jujuba])

HSP 1 Score: 67.8 bits (164), Expect = 8.7e-09
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           ME+P NA + GGE ILSDAYTINGQPG+LYPCSK+GT
Sbjct: 166 MEIPSNANKTGGEPILSDAYTINGQPGFLYPCSKKGT 202

[Close]

BLAST of ClCG09G014990 vs. NCBI nr
Match: gi|658008133|ref|XP_008339252.1| (PREDICTED: laccase-14 [Malus domestica])

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-08
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGT 38
           ME+P NA   GGE ILSDAYTINGQPG+LYPCSK GT
Sbjct: 173 MEIPGNANITGGEPILSDAYTINGQPGHLYPCSKSGT 209

[Close]

BLAST of ClCG09G014990 vs. NCBI nr
Match: gi|567157939|ref|XP_006418593.1| (hypothetical protein EUTSA_v10002968mg [Eutrema salsugineum])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 1   MEMPKNAKRRGGEAILSDAYTINGQPGYLYPCSKQGTKSLIQISYPCNSSIFLNS 56
           M++P+NAK+ GGE  +SDAYTINGQPGYL PCSK G       S+P +SS    S
Sbjct: 150 MDIPENAKKTGGEPAISDAYTINGQPGYLNPCSKPGK------SHPASSSFLFIS 198

The following BLAST results are available for this feature:

BLAST of ClCG09G014990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LAC14_ARATH	1.3e-07	64.86	Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1	[more]

BLAST of ClCG09G014990 vs. TrEMBL


Match Name	E-value	Identity	Description
V4L0B3_EUTSA	1.1e-07	56.36	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10002968mg PE=4 SV=1	[more]
V4LB16_EUTSA	1.9e-07	70.27	Laccase OS=Eutrema salsugineum GN=EUTSA_v10015612mg PE=3 SV=1	[more]
M5Y906_PRUPE	2.5e-07	75.00	Laccase OS=Prunus persica GN=PRUPE_ppa016865mg PE=3 SV=1	[more]
G7ILB5_MEDTR	2.5e-07	68.29	Laccase OS=Medicago truncatula GN=MTR_2g008330 PE=3 SV=2	[more]
A0A022PRX8_ERYGU	5.7e-07	75.68	Laccase OS=Erythranthe guttata GN=MIMGU_mgv1a019066mg PE=3 SV=1	[more]

BLAST of ClCG09G014990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09360.1	7.1e-09	64.86	laccase 14	[more]
AT2G30210.1	7.3e-06	59.46	laccase 3	[more]

BLAST of ClCG09G014990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111019\|ref\|XP_008455534.1\|	3.9e-09	81.08	PREDICTED: laccase-14 [Cucumis melo]	[more]
gi\|449438540\|ref\|XP_004137046.1\|	6.7e-09	81.08	PREDICTED: laccase-14 [Cucumis sativus]	[more]
gi\|1009151145\|ref\|XP_015893395.1\|	8.7e-09	78.38	PREDICTED: LOW QUALITY PROTEIN: laccase-14-like [Ziziphus jujuba]	[more]
gi\|658008133\|ref\|XP_008339252.1\|	9.6e-08	78.38	PREDICTED: laccase-14 [Malus domestica]	[more]
gi\|567157939\|ref\|XP_006418593.1\|	1.6e-07	56.36	hypothetical protein EUTSA_v10002968mg [Eutrema salsugineum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046274	lignin catabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0052716	hydroquinone:oxygen oxidoreductase activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G014990.1	ClCG09G014990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G014990	Cp4.1LG04g07020	Cucurbita pepo (Zucchini)	cpewcgB578

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G014990	Cucurbita moschata (Rifu)	cmowcgB072
ClCG09G014990	Cucurbita moschata (Rifu)	cmowcgB445
ClCG09G014990	Wild cucumber (PI 183967)	cpiwcgB541
ClCG09G014990	Cucumber (Chinese Long) v2	cuwcgB514
ClCG09G014990	Melon (DHL92) v3.5.1	mewcgB176
ClCG09G014990	Watermelon (97103) v1	wcgwmB010
ClCG09G014990	Cucurbita pepo (Zucchini)	cpewcgB221
ClCG09G014990	Bottle gourd (USVL1VR-Ls)	lsiwcgB215
ClCG09G014990	Cucumber (Gy14) v2	cgybwcgB473
ClCG09G014990	Melon (DHL92) v3.6.1	medwcgB171
ClCG09G014990	Silver-seed gourd	carwcgB0628
ClCG09G014990	Cucumber (Chinese Long) v3	cucwcgB535
ClCG09G014990	Watermelon (97103) v2	wcgwmbB035
ClCG09G014990	Wax gourd	wcgwgoB033
ClCG09G014990	Cucumber (Gy14) v1	cgywcgB592
ClCG09G014990	Cucurbita maxima (Rimu)	cmawcgB075
ClCG09G014990	Cucurbita maxima (Rimu)	cmawcgB444