ClCG09G014900 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G014900
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, unclassified
Location	CG_Chr09 : 27830333 .. 27830926 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTATGGTGAGAACAAGACCACTGGCAATGCAGTAGAACAACAATTGATGGCTCATGATGCATCGTTAGTGGCTCTTAAGGAGCATTTGATGTTGGTTCAAAATCGAATGAAAAAATAACTGATCAAAATAGACGTGAACTTGCTTTTGAGGTTGGGGATGAGGTTTTTCTAAAACTCAGAACATATAGGCAGCGGTCATTGGCTAAGAAAGATGTGAGAAGCTGTCACCTAAATATTATGGACCTTACCCCATAACAACAAAAATAGGAGAAGTAGCTTTCATTTCTTGCTACCTGCAGAGGCTTCGATCCATGATGTTTTCCATGTCTCTCAGCTCAAAAAGATGATAGGAAAGAACCACACGGTGCAACAGCATCCTCACCTTACTAAGGATTTCGAATGGCAAGCCCAACCAGAAACAATTTTGGGAATTAGGTCGAATGGTGAGACAACAATGATTGAATGGCTTGTGAACTTACCCGATAGTGAAGCTACATGGGAACCCAGTGATTTCATGCGCCAGCAATTTCCTACCCTCCACCTTGAGAGATTTATCGATTTTCTGAAAAATAAGCAATTGACTAAATGA

mRNA sequence

ATGTCTTATGGTGAGAACAAGACCACTGGCAATGCAGTAGAACAACAATTGATGGCTCATGATGCATCGTTAGTGGCTCTTAAGGAGCATTTGATGTTGGTTGGGGATGAGGTTTTTCTAAAACTCAGAACATATAGGCAGCGGTCATTGGCTAAGAAAGATGCTTCGATCCATGATGTTTTCCATGTCTCTCAGCTCAAAAAGATGATAGGAAAGAACCACACGGTGCAACAGCATCCTCACCTTACTAAGGATTTCGAATGGCAAGCCCAACCAGAAACAATTTTGGGAATTAGGTCGAATGGTGAGACAACAATGATTGAATGGCTTGTGAACTTACCCGATAGTGAAGCTACATGGGAACCCAGTGATTTCATGCGCCAGCAATTTCCTACCCTCCACCTTGAGAGATTTATCGATTTTCTGAAAAATAAGCAATTGACTAAATGA

Coding sequence (CDS)

ATGTCTTATGGTGAGAACAAGACCACTGGCAATGCAGTAGAACAACAATTGATGGCTCATGATGCATCGTTAGTGGCTCTTAAGGAGCATTTGATGTTGGTTGGGGATGAGGTTTTTCTAAAACTCAGAACATATAGGCAGCGGTCATTGGCTAAGAAAGATGCTTCGATCCATGATGTTTTCCATGTCTCTCAGCTCAAAAAGATGATAGGAAAGAACCACACGGTGCAACAGCATCCTCACCTTACTAAGGATTTCGAATGGCAAGCCCAACCAGAAACAATTTTGGGAATTAGGTCGAATGGTGAGACAACAATGATTGAATGGCTTGTGAACTTACCCGATAGTGAAGCTACATGGGAACCCAGTGATTTCATGCGCCAGCAATTTCCTACCCTCCACCTTGAGAGATTTATCGATTTTCTGAAAAATAAGCAATTGACTAAATGA

Protein sequence

MSYGENKTTGNAVEQQLMAHDASLVALKEHLMLVGDEVFLKLRTYRQRSLAKKDASIHDVFHVSQLKKMIGKNHTVQQHPHLTKDFEWQAQPETILGIRSNGETTMIEWLVNLPDSEATWEPSDFMRQQFPTLHLERFIDFLKNKQLTK

Homology

[Close]

BLAST of ClCG09G014900 vs. TrEMBL
Match: A0A087G0A8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 58/194 (29.90%), Postives = 90/194 (46.39%), Query Frame = 1


Query: 1    MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLK 60
            + Y +  T    +E+ L   DA +  LK+H++                    VGD VFLK
Sbjct: 1265 LRYEDGSTKIAKLEEMLKERDAMVQLLKQHILKAQQLMKRRVDGHRRELEFHVGDMVFLK 1324

Query: 61   LRTYRQRSLAKK------------------------------DASIHDVFHVSQLKKMIG 120
            L+ YRQ+SLAK+                               + IH  FH+SQLKK +G
Sbjct: 1325 LKPYRQQSLAKRVNEKLAARFYGPYEVEARVGEVAYKLKLPTGSKIHHTFHISQLKKAVG 1384

Query: 121  KNHTVQQHP-HLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMR 142
             +      P  LT +   +A+PE  +G+R + +T+  E L+    LPD ++TWE S  ++
Sbjct: 1385 SSFQPMDLPDQLTGEGVLEAEPEACMGVRVHPQTSQEEVLIKWKGLPDCDSTWEWSGVIQ 1444

[Close]

BLAST of ClCG09G014900 vs. TrEMBL
Match: A0A087GEK8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-13
Identity = 58/189 (30.69%), Postives = 87/189 (46.03%), Query Frame = 1


Query: 1    MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLK 60
            + + +  TT   +E QL   DA +V LK++++                    VGD VFLK
Sbjct: 1326 LRFEDGSTTNANLETQLKERDAMIVILKQNILKAQQLMKHRADGHRREVEFKVGDMVFLK 1385

Query: 61   LRTYRQRSLAKK------------------------------DASIHDVFHVSQLKKMIG 120
            L+ YRQ+SLA++                              D+ IHD FHVSQLK  +G
Sbjct: 1386 LKPYRQQSLARRVNEKLAARFYGPYEVLARVGVVAYQLKLPADSKIHDTFHVSQLKLAVG 1445

Query: 121  KN-HTVQQHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMR 137
             +       PHLT +   +A+PE  +G+R N  +   E L+    LP+ ++TWE    ++
Sbjct: 1446 SSFQPAALPPHLTAENVLEAEPEAHMGVRINSRSGQQEVLIKWKGLPECDSTWEWVGVIQ 1505

[Close]

BLAST of ClCG09G014900 vs. TrEMBL
Match: A0A087GAS4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-12
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = 1


Query: 5   ENKTTGNA-VEQQLMAHDASLVALKE------HLM-------------LVGDEVFLKLRT 64
           E+ +TGNA +E+ L+  D  +  L++      HLM              VGD VFLKLR 
Sbjct: 154 EDGSTGNATLERMLLERDDMICVLQQQMLRTQHLMKQQADSHRREVNFAVGDLVFLKLRP 213

Query: 65  YRQRSLAKK------------------------------DASIHDVFHVSQLKKMIGKNH 124
           YRQ+SLA++                               A +H  FHVSQLK  +G   
Sbjct: 214 YRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLPPTAKVHHTFHVSQLKASLGSAL 273

Query: 125 TVQ-QHPHLTKDFEWQAQPETILGIRSN----GETTMIEWLVNLPDSEATWEPSDFMRQQ 137
                 P LT +   +A+PE +LG R N     E  +I+W   +P+SE TWE    M+ Q
Sbjct: 274 VPSTMPPQLTAEGVLEAEPEFVLGTRMNKQSGQEEVLIQW-KGMPESECTWEWRRVMKGQ 333

[Close]

BLAST of ClCG09G014900 vs. TrEMBL
Match: A0A087GAS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-12
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = 1


Query: 5    ENKTTGNA-VEQQLMAHDASLVALKE------HLM-------------LVGDEVFLKLRT 64
            E+ +TGNA +E+ L+  D  +  L++      HLM              VGD VFLKLR 
Sbjct: 1226 EDGSTGNATLERMLLERDDMICVLQQQMLRTQHLMKQQADSHRREVNFAVGDLVFLKLRP 1285

Query: 65   YRQRSLAKK------------------------------DASIHDVFHVSQLKKMIGKNH 124
            YRQ+SLA++                               A +H  FHVSQLK  +G   
Sbjct: 1286 YRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLPPTAKVHHTFHVSQLKASLGSAL 1345

Query: 125  TVQ-QHPHLTKDFEWQAQPETILGIRSN----GETTMIEWLVNLPDSEATWEPSDFMRQQ 137
                  P LT +   +A+PE +LG R N     E  +I+W   +P+SE TWE    M+ Q
Sbjct: 1346 VPSTMPPQLTAEGVLEAEPEFVLGTRMNKQSGQEEVLIQW-KGMPESECTWEWRRVMKGQ 1405

[Close]

BLAST of ClCG09G014900 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.6e-12
Identity = 59/190 (31.05%), Postives = 81/190 (42.63%), Query Frame = 1


Query: 3    YGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLKLR 62
            +G + T+  AV+Q L   D  L  LK+HL                     VGD V++KLR
Sbjct: 812  FGSDSTSVLAVDQLLQERDLILNELKDHLXCAQSKMKSSXDAHRXAVQFEVGDFVYIKLR 871

Query: 63   TYRQRSLAKK------------------------------DASIHDVFHVSQLKKMIGKN 122
             Y  RSLAK+                                +IH VFHVS LK+ +G  
Sbjct: 872  PYXLRSLAKRPNEKLSPRYFGPYKVVXQIXXVAYRLELPXSTTIHXVFHVSXLKRALGSA 931

Query: 123  HTVQQ-HPHLTKDFEWQAQPETILGIRSN------GETTMIEWLVNLPDSEATWEPSDFM 137
               Q   P L +D EW  +P+ +L I  +      G   +I+W   LP  EA+WE  D +
Sbjct: 932  DLCQPLSPILVEDLEWLVEPDQVLDIHQSPNNNQLGIEVLIQWK-GLPQFEASWESVDTI 991

[Close]

BLAST of ClCG09G014900 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.3e-25
Identity = 79/189 (41.80%), Postives = 100/189 (52.91%), Query Frame = 1


Query: 1    MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLK 60
            +SYG+ KTT N VE  L   D++L ALKE+L L                   VG+EV+LK
Sbjct: 922  LSYGDKKTTNNEVELMLKERDSALNALKENLTLAQNRMKKFADLKRRELKLKVGEEVYLK 981

Query: 61   LRTYRQRSLAKK------------------------------DASIHDVFHVSQLKKMIG 120
            L+ YRQRSLA+K                              +A+IH+VFH+SQLK  +G
Sbjct: 982  LKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLPPEAAIHNVFHISQLKPKLG 1041

Query: 121  KNHTVQ-QHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMR 137
                VQ QH  LT++FE Q QPE +LGIR N E    EWL+    L +S+ATWE    M 
Sbjct: 1042 AQQVVQHQHLMLTENFELQLQPENVLGIRWNKELGANEWLIKWQGLQESDATWESVYRMN 1101

[Close]

BLAST of ClCG09G014900 vs. NCBI nr
Match: gi|727428291|ref|XP_010470614.1| (PREDICTED: uncharacterized protein LOC104750511 [Camelina sativa])

HSP 1 Score: 86.3 bits (212), Expect = 5.0e-14
Identity = 64/196 (32.65%), Postives = 88/196 (44.90%), Query Frame = 1


Query: 1   MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLK 60
           + YG+  T   +VE+ L   D+ LV L+E++ L                   VGD V+LK
Sbjct: 40  LRYGDTPTPNASVEELLTDRDSLLVELRENMELAQYRMQKEANKHRRQVELSVGDWVYLK 99

Query: 61  LRTYRQRSLAKKD------------------------------ASIHDVFHVSQLKKMIG 120
           LR YRQ S+ ++                               ++IH VFHVSQLK  + 
Sbjct: 100 LRPYRQSSVVQRKNEKLSQRFFGPYKIVQKVGRVAYKLDLPATSNIHPVFHVSQLKVAVP 159

Query: 121 KNHTVQQHPH-LTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMR 144
             +  Q  P  LT D EW  +PET+L IR + + T  E LV    LP+ E+TWE    + 
Sbjct: 160 APYQAQALPPILTPDLEWATEPETLLDIRRSSQGTETEVLVQWKGLPNGESTWESLTGLM 219

[Close]

BLAST of ClCG09G014900 vs. NCBI nr
Match: gi|674235545|gb|KFK28310.1| (hypothetical protein AALP_AA8G499800 [Arabis alpina])

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-13
Identity = 58/189 (30.69%), Postives = 87/189 (46.03%), Query Frame = 1


Query: 1    MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLK 60
            + + +  TT   +E QL   DA +V LK++++                    VGD VFLK
Sbjct: 1326 LRFEDGSTTNANLETQLKERDAMIVILKQNILKAQQLMKHRADGHRREVEFKVGDMVFLK 1385

Query: 61   LRTYRQRSLAKK------------------------------DASIHDVFHVSQLKKMIG 120
            L+ YRQ+SLA++                              D+ IHD FHVSQLK  +G
Sbjct: 1386 LKPYRQQSLARRVNEKLAARFYGPYEVLARVGVVAYQLKLPADSKIHDTFHVSQLKLAVG 1445

Query: 121  KN-HTVQQHPHLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMR 137
             +       PHLT +   +A+PE  +G+R N  +   E L+    LP+ ++TWE    ++
Sbjct: 1446 SSFQPAALPPHLTAENVLEAEPEAHMGVRINSRSGQQEVLIKWKGLPECDSTWEWVGVIQ 1505

[Close]

BLAST of ClCG09G014900 vs. NCBI nr
Match: gi|674229525|gb|KFK23310.1| (hypothetical protein AALP_AAs43195U000200 [Arabis alpina])

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-13
Identity = 58/194 (29.90%), Postives = 90/194 (46.39%), Query Frame = 1


Query: 1    MSYGENKTTGNAVEQQLMAHDASLVALKEHLML-------------------VGDEVFLK 60
            + Y +  T    +E+ L   DA +  LK+H++                    VGD VFLK
Sbjct: 1265 LRYEDGSTKIAKLEEMLKERDAMVQLLKQHILKAQQLMKRRVDGHRRELEFHVGDMVFLK 1324

Query: 61   LRTYRQRSLAKK------------------------------DASIHDVFHVSQLKKMIG 120
            L+ YRQ+SLAK+                               + IH  FH+SQLKK +G
Sbjct: 1325 LKPYRQQSLAKRVNEKLAARFYGPYEVEARVGEVAYKLKLPTGSKIHHTFHISQLKKAVG 1384

Query: 121  KNHTVQQHP-HLTKDFEWQAQPETILGIRSNGETTMIEWLV---NLPDSEATWEPSDFMR 142
             +      P  LT +   +A+PE  +G+R + +T+  E L+    LPD ++TWE S  ++
Sbjct: 1385 SSFQPMDLPDQLTGEGVLEAEPEACMGVRVHPQTSQEEVLIKWKGLPDCDSTWEWSGVIQ 1444

[Close]

BLAST of ClCG09G014900 vs. NCBI nr
Match: gi|674234211|gb|KFK26976.1| (hypothetical protein AALP_AA8G317800 [Arabis alpina])

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-12
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = 1


Query: 5   ENKTTGNA-VEQQLMAHDASLVALKE------HLM-------------LVGDEVFLKLRT 64
           E+ +TGNA +E+ L+  D  +  L++      HLM              VGD VFLKLR 
Sbjct: 154 EDGSTGNATLERMLLERDDMICVLQQQMLRTQHLMKQQADSHRREVNFAVGDLVFLKLRP 213

Query: 65  YRQRSLAKK------------------------------DASIHDVFHVSQLKKMIGKNH 124
           YRQ+SLA++                               A +H  FHVSQLK  +G   
Sbjct: 214 YRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLPPTAKVHHTFHVSQLKASLGSAL 273

Query: 125 TVQ-QHPHLTKDFEWQAQPETILGIRSN----GETTMIEWLVNLPDSEATWEPSDFMRQQ 137
                 P LT +   +A+PE +LG R N     E  +I+W   +P+SE TWE    M+ Q
Sbjct: 274 VPSTMPPQLTAEGVLEAEPEFVLGTRMNKQSGQEEVLIQW-KGMPESECTWEWRRVMKGQ 333

The following BLAST results are available for this feature:

BLAST of ClCG09G014900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087G0A8_ARAAL	3.0e-13	29.90	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1	[more]
A0A087GEK8_ARAAL	3.0e-13	30.69	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G499800 PE=4 SV=1	[more]
A0A087GAS4_ARAAL	4.3e-12	33.69	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]
A0A087GAS3_ARAAL	4.3e-12	33.69	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]
A5CAG1_VITVI	5.6e-12	31.05	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1	[more]

BLAST of ClCG09G014900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094491\|ref\|XP_008448087.1\|	6.3e-25	41.80	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|727428291\|ref\|XP_010470614.1\|	5.0e-14	32.65	PREDICTED: uncharacterized protein LOC104750511 [Camelina sativa]	[more]
gi\|674235545\|gb\|KFK28310.1\|	4.3e-13	30.69	hypothetical protein AALP_AA8G499800 [Arabis alpina]	[more]
gi\|674229525\|gb\|KFK23310.1\|	4.3e-13	29.90	hypothetical protein AALP_AAs43195U000200 [Arabis alpina]	[more]
gi\|674234211\|gb\|KFK26976.1\|	6.1e-12	33.69	hypothetical protein AALP_AA8G317800 [Arabis alpina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016197	Chromo-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G014900.1	ClCG09G014900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016197	Chromo domain-like	unknown	SSF54160	Chromo domain-like	coord: 56..144 score: 2.2
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 34..132 score: 5.7
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 34..132 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G014900	Cucumber (Chinese Long) v3	cucwcgB535
ClCG09G014900	Watermelon (97103) v2	wcgwmbB035
ClCG09G014900	Wax gourd	wcgwgoB033
ClCG09G014900	Cucumber (Gy14) v1	cgywcgB592
ClCG09G014900	Cucurbita maxima (Rimu)	cmawcgB075
ClCG09G014900	Cucurbita maxima (Rimu)	cmawcgB444
ClCG09G014900	Cucurbita moschata (Rifu)	cmowcgB072
ClCG09G014900	Cucurbita moschata (Rifu)	cmowcgB445
ClCG09G014900	Wild cucumber (PI 183967)	cpiwcgB541
ClCG09G014900	Cucumber (Chinese Long) v2	cuwcgB514
ClCG09G014900	Melon (DHL92) v3.5.1	mewcgB176
ClCG09G014900	Watermelon (97103) v1	wcgwmB012
ClCG09G014900	Watermelon (97103) v1	wcgwmB010
ClCG09G014900	Cucurbita pepo (Zucchini)	cpewcgB221
ClCG09G014900	Cucurbita pepo (Zucchini)	cpewcgB578
ClCG09G014900	Bottle gourd (USVL1VR-Ls)	lsiwcgB215
ClCG09G014900	Cucumber (Gy14) v2	cgybwcgB473
ClCG09G014900	Melon (DHL92) v3.6.1	medwcgB171
ClCG09G014900	Silver-seed gourd	carwcgB0628