ClCG09G014830 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G014830
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	40S ribosomal protein S5, putative
Location	CG_Chr09 : 27676247 .. 27676870 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTCAACCGGTGGACCTTTGATGATGTCCAGGTCAATGACATCTCTCTCGTTGATTACATTGGTGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCTGGGAGGTACTCCGTCAAGCGCTTCCGAAAGGCTCAGTGCCCAATTGTGGAGAGGCTCACAAATTCACTTATGATGCACGGTAGGAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAGCACGCAATGGAGATTATTCATCTTCTAACTGATCTCAACCCAGTTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGGCCACGTGAAGATGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAGGCGGTGGATATATCCCCTCTGCGCCGTGTTAACCAAGCAATCTATCTTCTTACGACAGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAGACAATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCTTCAAACAGTTATGCCATCAAGAAAAAGGACGAGATTGAGAGAGTTGCAAAGGCTAATCGTTGA

mRNA sequence

ATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTCAACCGGTGGACCTTTGATGATGTCCAGGTCAATGACATCTCTCTCGTTGATTACATTGGTGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCTGGGAGGTACTCCGTCAAGCGCTTCCGAAAGGCTCAGTGCCCAATTGTGGAGAGGCTCACAAATTCACTTATGATGCACGGTAGGAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAGCACGCAATGGAGATTATTCATCTTCTAACTGATCTCAACCCAGTTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGGCCACGTGAAGATGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAGGCGGTGGATATATCCCCTCTGCGCCGTGTTAACCAAGCAATCTATCTTCTTACGACAGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAGACAATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCTTCAAACAGTTATGCCATCAAGAAAAAGGACGAGATTGAGAGAGTTGCAAAGGCTAATCGTTGA

Coding sequence (CDS)

ATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATCATGATGTGAAGCTGTTCAACCGGTGGACCTTTGATGATGTCCAGGTCAATGACATCTCTCTCGTTGATTACATTGGTGTTGCACCTGCCAAGCATGCCACCTATGTCCCCCACACTGCTGGGAGGTACTCCGTCAAGCGCTTCCGAAAGGCTCAGTGCCCAATTGTGGAGAGGCTCACAAATTCACTTATGATGCACGGTAGGAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAGCACGCAATGGAGATTATTCATCTTCTAACTGATCTCAACCCAGTTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGGCCACGTGAAGATGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAGGCGGTGGATATATCCCCTCTGCGCCGTGTTAACCAAGCAATCTATCTTCTTACGACAGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAGACAATTGCAGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAGGGTTCTTCAAACAGTTATGCCATCAAGAAAAAGGACGAGATTGAGAGAGTTGCAAAGGCTAATCGTTGA

Protein sequence

MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR

Homology

[Close]

BLAST of ClCG09G014830 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.2e-98
Identity = 182/207 (87.92%), Postives = 195/207 (94.20%), Query Frame = 1


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 61
           + E+D  + Q+LT   ++VKLFNRW+FDDV V DISLVDYIGV P+KHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNP+QVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.0e-98
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 1


Query: 18  DVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           +VKLFNRW+FDDVQ++D+SL+DYIGV P+KHATYVPHTAGRYSVKRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGPREDATRIGSAGVV 137
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NP+QVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 198 EIERVAKANR 208
           EIERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]

BLAST of ClCG09G014830 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-97
Identity = 182/207 (87.92%), Postives = 193/207 (93.24%), Query Frame = 1


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 61
           A +VD  + Q LT   ++VKLFNRWT+DDV V DISLVDYIGV  AKHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNP+QVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 313.2 bits (801), Expect = 2.2e-84
Identity = 154/190 (81.05%), Postives = 172/190 (90.53%), Query Frame = 1


Query: 18  DVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           D+KLF +W+ DDVQ+NDISL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGPREDATRIGSAGVV 137
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 198 EIERVAKANR 208
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of ClCG09G014830 vs. Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 313.2 bits (801), Expect = 2.2e-84
Identity = 154/190 (81.05%), Postives = 172/190 (90.53%), Query Frame = 1


Query: 18  DVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 77
           D+KLF +W+ DDVQ+NDISL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 78  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGPREDATRIGSAGVV 137
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 138 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 198 EIERVAKANR 208
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]

BLAST of ClCG09G014830 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 8.1e-110
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.1e-109
Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQ HHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. TrEMBL
Match: A0A0A0LRZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 5.2e-109
Identity = 204/207 (98.55%), Postives = 205/207 (99.03%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQELT PHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 78  MAVEVDVVNQELTLPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 137

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLN VQVIVDAVV
Sbjct: 138 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNTVQVIVDAVV 197

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 198 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 257

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 258 INAAKGSSNSYAIKKKDEIERVAKANR 284

[Close]

BLAST of ClCG09G014830 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 5.8e-108
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVEVDV +QELTQ HHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVASQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVER TNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERRTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. TrEMBL
Match: W9RQK6_9ROSA (40S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.4e-101
Identity = 189/202 (93.56%), Postives = 196/202 (97.03%), Query Frame = 1


Query: 6   DVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYSVKRFR 65
           DV  Q+ +QPH DVKLFNRW+FDDVQVNDISL DYIGV PAKHATYVPHTAGRYSVKRFR
Sbjct: 3   DVSVQDPSQPHFDVKLFNRWSFDDVQVNDISLADYIGVVPAKHATYVPHTAGRYSVKRFR 62

Query: 66  KAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGPR 125
           KAQCPIVERLTNSLMMHGRNNGKKLMAVRI++HAMEIIHLLTDLNP+QVIVDAVVNSGPR
Sbjct: 63  KAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHAMEIIHLLTDLNPIQVIVDAVVNSGPR 122

Query: 126 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAK 185
           EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIKTIAECLADELINAAK
Sbjct: 123 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAK 182

Query: 186 GSSNSYAIKKKDEIERVAKANR 208
           GSSNSYAIKKKDEIERVAKANR
Sbjct: 183 GSSNSYAIKKKDEIERVAKANR 204

[Close]

BLAST of ClCG09G014830 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B)

HSP 1 Score: 360.5 bits (924), Expect = 6.8e-100
Identity = 182/207 (87.92%), Postives = 195/207 (94.20%), Query Frame = 1


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 61
           + E+D  + Q+LT   ++VKLFNRW+FDDV V DISLVDYIGV P+KHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNP+QVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A)

HSP 1 Score: 357.1 bits (915), Expect = 7.5e-99
Identity = 182/207 (87.92%), Postives = 193/207 (93.24%), Query Frame = 1


Query: 2   AVEVDV-VNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 61
           A +VD  + Q LT   ++VKLFNRWT+DDV V DISLVDYIGV  AKHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 62  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 121
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNP+QVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 122 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 181
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 182 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 1


Query: 74  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGP--REDATRI 133
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 134 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 193
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 194 AIKKKDEIERVAKANR 208
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]

BLAST of ClCG09G014830 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 1


Query: 74  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVVNSGP--REDATRI 133
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 134 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 193
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 194 AIKKKDEIERVAKANR 208
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

[Close]

BLAST of ClCG09G014830 vs. NCBI nr
Match: gi|659114009|ref|XP_008456864.1| (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 1.4e-110
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS
Sbjct: 47  MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 106

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 107 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 166

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 167 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 226

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 227 INAAKGSSNSYAIKKKDEIERVAKANR 253

[Close]

BLAST of ClCG09G014830 vs. NCBI nr
Match: gi|659092671|ref|XP_008447165.1| (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo])

HSP 1 Score: 407.1 bits (1045), Expect = 1.8e-110
Identity = 205/207 (99.03%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. NCBI nr
Match: gi|659092669|ref|XP_008447164.1| (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo])

HSP 1 Score: 407.1 bits (1045), Expect = 1.8e-110
Identity = 205/207 (99.03%), Postives = 207/207 (100.00%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 73

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 133

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

[Close]

BLAST of ClCG09G014830 vs. NCBI nr
Match: gi|449445316|ref|XP_004140419.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.2e-109
Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVEVDVVNQEL QPHHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 1   MAVEVDVVNQELIQPHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 60

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNP+QVIVDAVV
Sbjct: 61  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 120

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 181 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of ClCG09G014830 vs. NCBI nr
Match: gi|778725851|ref|XP_011659014.1| (PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 1.5e-109
Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 1


Query: 1   MAVEVDVVNQELTQPHHDVKLFNRWTFDDVQVNDISLVDYIGVAPAKHATYVPHTAGRYS 60
           MAVE+DVVNQELTQ HHDVKLFNRWTFDDVQVNDISLVDY+GVAPAKHATYVPHTAGRYS
Sbjct: 14  MAVEIDVVNQELTQSHHDVKLFNRWTFDDVQVNDISLVDYVGVAPAKHATYVPHTAGRYS 73

Query: 61  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 120
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV
Sbjct: 74  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPVQVIVDAVV 133

Query: 121 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 180
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 134 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 193

Query: 181 INAAKGSSNSYAIKKKDEIERVAKANR 208
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 194 INAAKGSSNSYAIKKKDEIERVAKANR 220

The following BLAST results are available for this feature:

BLAST of ClCG09G014830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS51_ARATH	1.2e-98	87.92	40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1	[more]
RS5_CICAR	2.0e-98	94.21	40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1	[more]
RS52_ARATH	1.3e-97	87.92	40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2	[more]
RS5_HUMAN	2.2e-84	81.05	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4	[more]
RS5_BOVIN	2.2e-84	81.05	40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3	[more]

BLAST of ClCG09G014830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSZ1_CUCSA	8.1e-110	98.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1	[more]
A0A0A0K5K0_CUCSA	1.1e-109	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1	[more]
A0A0A0LRZ5_CUCSA	5.2e-109	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1	[more]
A0A0A0LVI4_CUCSA	5.8e-108	97.10	40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1	[more]
W9RQK6_9ROSA	1.4e-101	93.56	40S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1	[more]

BLAST of ClCG09G014830 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37270.1	6.8e-100	87.92	ribosomal protein 5B	[more]
AT3G11940.1	7.5e-99	87.92	ribosomal protein 5A	[more]
ATCG01240.1	1.4e-09	35.29	ATCG01240.1 ribosomal protein S7	[more]
ATCG00900.1	1.4e-09	35.29	ATCG00900.1 Ribosomal protein S7p/S5e family protein	[more]

BLAST of ClCG09G014830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114009\|ref\|XP_008456864.1\|	1.4e-110	99.52	PREDICTED: 40S ribosomal protein S5-like [Cucumis melo]	[more]
gi\|659092671\|ref\|XP_008447165.1\|	1.8e-110	99.03	PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo]	[more]
gi\|659092669\|ref\|XP_008447164.1\|	1.8e-110	99.03	PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo]	[more]
gi\|449445316\|ref\|XP_004140419.1\|	1.2e-109	98.07	PREDICTED: 40S ribosomal protein S5 [Cucumis sativus]	[more]
gi\|778725851\|ref\|XP_011659014.1\|	1.5e-109	98.55	PREDICTED: 40S ribosomal protein S5 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000235	Ribosomal_S5/S7
IPR005716	Ribosomal_S5/S7_euk/arc
IPR020606	Ribosomal_S7_CS
IPR023798	Ribosomal_S7_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G014830.1	ClCG09G014830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000235	Ribosomal protein S5/S7	PIR	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 1..207 score: 6.1
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 5..207 score: 2.4E
IPR005716	Ribosomal protein S5/S7, eukaryotic/archaeal	TIGRFAMs	TIGR01028	TIGR01028	coord: 19..207 score: 6.7
IPR020606	Ribosomal protein S7, conserved site	PROSITE	PS00052	RIBOSOMAL_S7	coord: 73..99 scor
IPR023798	Ribosomal protein S7 domain	GENE3D	G3DSA:1.10.455.10		coord: 19..207 score: 2.4
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 62..207 score: 2.1
IPR023798	Ribosomal protein S7 domain	unknown	SSF47973	Ribosomal protein S7	coord: 20..207 score: 5.49
None	No IPR available	PANTHER	PTHR11205:SF24	40S RIBOSOMAL PROTEIN S5-1-RELATED	coord: 5..207 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G014830	Cla006351	Watermelon (97103) v1	wcgwmB010
ClCG09G014830	Cla97C09G177030	Watermelon (97103) v2	wcgwmbB035
ClCG09G014830	Bhi05G000504	Wax gourd	wcgwgoB044
ClCG09G014830	Lsi05G008480	Bottle gourd (USVL1VR-Ls)	lsiwcgB314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G014830	Cucurbita maxima (Rimu)	cmawcgB075
ClCG09G014830	Cucurbita moschata (Rifu)	cmowcgB072
ClCG09G014830	Watermelon (97103) v1	wcgwmB012
ClCG09G014830	Cucurbita pepo (Zucchini)	cpewcgB578