ClCG09G013920 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G013920
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy3-gypsy retrotransposon protein
LocationCG_Chr09 : 22252182 .. 22254242 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACTCTTCTGCTACCTGAAAAGAAAAACATAAAAGAAAAGAATGAGCTAAATAGCCCAGTGAGTGATGAATTCTGCCATAGGGTAGCTTATTGTATTTAGGGTTAGAGGGTTAAAATTGTTGGACTATCTGAAAAGGATTTGTATAAACATTTATAGTAAAATAGAAGAGTGTTTGTTAAGTTTGTGTTTCATAAGGTATGTAAAGGAGAGAAAGATTGGATAGTAGAAGTCAAAAAAGGTTGATGTGCTATCTCCACGCCTCATTCCAGGCTTAAGAGGGTAATCTGGGAGGGGGTGTGACAAGTTTGTATTAGAGTAAGGTTTCGAGGGAAAAAAACTAGGGAGTTGGTCAGAGAAAAGTTATGAAAACCTAGGGAAACAGGTTTGTGGAAACCTGAGAGTTAGTCAAAGTCGAAGTAAGTGTTTCTAGTGAAACCTAAGGATTTGATTTTAAGAGTTAGAATGCATTAGGATTGCATTAGGGAGGTTGACATGTGTTTGGCAGATGGGTAAAATAAAGTGTTGTTTTCACTAAGTGTATAATTCATTGCATTGTAGGAAATCATGCATAGAGGCTTGGAACTTGTAATGCTACCAGGACACAATGGGGGAAAGAGAGGGGGAATCAAGTCATCCTCAAATTAGGATTGATATGGGAGAATAGCTCCTAAACAGGTTTGCTCAACGACTAGTTGAAGGGTGAGAAGCAGTGCAGCTAGATCTTGAGAAACAGTATGGTATAGAGCGGTTGAAGTCTTTAGAGGTAACCACCTTTGAAGGGACCACAATCCAACAGATGTTGAAGTTCGGATGAATTTGATAGGGAAAATTTTCATGGTGATGAGGACCAGAAGGTGACACTTGTCGTATTATTGTTGCAAAAAGGAGCAGAAGATTGGTGGCAAGTGAGTGAGAATAGACGACTTCATATGGATGAACCCACCTGGAGGGAATTTAAGAAGACTTTTTATGAGAAATTTTATCCACAGTCATTTCGTGATGCAAAGAGAAATGAGTTTCTTAGACTTGTACAAGGCAACATGTCAGTAGCGGAGTACGAGAAGAAGTACATGGAGTTACCCAAGTAACAACTAGTCCAAACAGTATGGGAGGTACATGTCAGTAGTGAAGTATAAGAGGTGCAGACGGTTCGAGGAAGGATTGAGGAAAGAAATTTGTACCCCTGTAACAACCAGTGCTAAGTGGAATGAGTTTTCTAAACTAGTGGAAGCTGCTATGAGGGTGTAAAAGAGTATGGCGGAAGAAAACCAAGAAGGAGAAATAATATATATGGTGGTAGTGGATCTAAATCTCCATTGTCCATCTATTGAATGAATAAGAAGTGAAGGAAGTAAGATTTGCACTCGAAGTATCTAGTAATGGAACTTTTAAATCCAAGCATGGAGTTAAATCGGGTTCCAAGTCGAGTTCAAGCAAAGAAATTCAGGGAATAGGGGGAACTATTCGTATTGAGCAACTTTAGAAATCTGTTGTTAGTGTTAGAGGGAGATCTTTATGTTCTGAATGCAACAGGTATCATTGGGGACAGTGTCCTAGCGAAACTCATACTTGTTATGAATGTGCACAACCATGTCACTTTAAAAGACCACACTTGATGCAGAAAAACAAGAATGATAAACAAGGCTTGCAAACACCGGTGGTGAATGGTAACAGTCAAGTTTCTGGTGTTAAGTTATAAATAGGTTTAAGGTATGTTAATTGTTATGGAATGATCTATAAGTAATGTACGATATATATAAATAAGTTTTTAATCAGAAGTTTTAAGTTTTATGGTTTATTATTGTGACGTTATTTCTTATGGTGTTTTATGTCTAAATGATTTTTGCTGAATTTCGAGGACGAAATGCCTGTAAAAGGGTAGTAATTTGTAAACCCTCTCTTCTTTTACTCTTTCTTGGAAATGCTAGGAAACTTACAGTTGAGGTTGAACTCGGGACCTGAGATTAATTGAAGGTAGATTTTGAGGTTGAAGCTTTCATCGGGTATAAAAGGGGGAAGAAGAAAAGAGTTGAATTAAGAGCTTTTGGTGGATAA

mRNA sequence

ATGGGAACTCTTCTGCTACCTGAAAAGAAAAACATAAAAGAAAAGAATGAGCTAAATAGCCCAGTGAGTGATGAATTCTGCCATAGGCTAGATCTTGAGAAACAGTATGGTATAGAGCGGTTGAAGTCTTTAGAGAAGGTGACACTTGTCGTATTATTGTTGCAAAAAGGAGCAGAAGATTGGTGGCAAGTGAGTGAGAATAGACGACTTCATATGGATGAACCCACCTGGAGGGAATTTAAGAAGACTTTTTATGAGAAATTTTATCCACAGTCATTTCGTGATGCAAAGAGAAATGAGTTTCTTAGACTTGTACAAGGCAACATGTCAGTAGCGGAGTACGAGAAGAAGTACATGGAGTTACCCAAACGGTTCGAGGAAGGATTGAGGAAAGAAATTTGTACCCCTGTAACAACCAGTGCTAAGTGGAATGAGTTTTCTAAACTAGTGGAAGCTGCTATGAGGGAAGTAAGATTTGCACTCGAAGTATCTAGTAATGGAACTTTTAAATCCAAGCATGGAGTTAAATCGGGTTCCAAGTCGAGTTCAAGCAAAGAAATTCAGGGAATAGGGGGAACTATTCGGAGATCTTTATGTTCTGAATGCAACAGGTATCATTGGGGACAGTGTCCTAGCGAAACTCATACTTGTTATGAATGTGCACAACCATGTCACTTTAAAAGACCACACTTGATGCAGAAAAACAAGAATGATAAACAAGGCTTGCAAACACCGGTGGTGAATGGTAACAGTCAAGTAGATTTTGAGGTTGAAGCTTTCATCGGGTATAAAAGGGGGAAGAAGAAAAGAGTTGAATTAAGAGCTTTTGGTGGATAA

Coding sequence (CDS)

ATGGGAACTCTTCTGCTACCTGAAAAGAAAAACATAAAAGAAAAGAATGAGCTAAATAGCCCAGTGAGTGATGAATTCTGCCATAGGCTAGATCTTGAGAAACAGTATGGTATAGAGCGGTTGAAGTCTTTAGAGAAGGTGACACTTGTCGTATTATTGTTGCAAAAAGGAGCAGAAGATTGGTGGCAAGTGAGTGAGAATAGACGACTTCATATGGATGAACCCACCTGGAGGGAATTTAAGAAGACTTTTTATGAGAAATTTTATCCACAGTCATTTCGTGATGCAAAGAGAAATGAGTTTCTTAGACTTGTACAAGGCAACATGTCAGTAGCGGAGTACGAGAAGAAGTACATGGAGTTACCCAAACGGTTCGAGGAAGGATTGAGGAAAGAAATTTGTACCCCTGTAACAACCAGTGCTAAGTGGAATGAGTTTTCTAAACTAGTGGAAGCTGCTATGAGGGAAGTAAGATTTGCACTCGAAGTATCTAGTAATGGAACTTTTAAATCCAAGCATGGAGTTAAATCGGGTTCCAAGTCGAGTTCAAGCAAAGAAATTCAGGGAATAGGGGGAACTATTCGGAGATCTTTATGTTCTGAATGCAACAGGTATCATTGGGGACAGTGTCCTAGCGAAACTCATACTTGTTATGAATGTGCACAACCATGTCACTTTAAAAGACCACACTTGATGCAGAAAAACAAGAATGATAAACAAGGCTTGCAAACACCGGTGGTGAATGGTAACAGTCAAGTAGATTTTGAGGTTGAAGCTTTCATCGGGTATAAAAGGGGGAAGAAGAAAAGAGTTGAATTAAGAGCTTTTGGTGGATAA

Protein sequence

MGTLLLPEKKNIKEKNELNSPVSDEFCHRLDLEKQYGIERLKSLEKVTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFYPQSFRDAKRNEFLRLVQGNMSVAEYEKKYMELPKRFEEGLRKEICTPVTTSAKWNEFSKLVEAAMREVRFALEVSSNGTFKSKHGVKSGSKSSSSKEIQGIGGTIRRSLCSECNRYHWGQCPSETHTCYECAQPCHFKRPHLMQKNKNDKQGLQTPVVNGNSQVDFEVEAFIGYKRGKKKRVELRAFGG
Homology
[Close]
BLAST of ClCG09G013920 vs. TrEMBL
Match: W1NRU2_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s00876p00007370 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 63/211 (29.86%), Postives = 95/211 (45.02%), Query Frame = 1 

Query: 40  RLKSLEKVTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFYPQSFRDAKRN 99
           RL + + V     LL+K A  WW V +  R  +   TW +F + F +K+Y ++ R A+ N
Sbjct: 140 RLGNGDSVACAASLLKKDARIWWDVIKQTR-DVAAMTWADFVQVFNKKYYSEAIRSARVN 199

Query: 100 EFLRLVQGNMSVAEYEKKYMELPK--------------RFEEGLRKEICTPVTTS-AKWN 159
           EF  L QG  +V EY +++  L K              RF EGL   I   +  S  +  
Sbjct: 200 EFTNLRQGKSTVTEYARQFDRLAKFATDLVPTEFLRIHRFTEGLDSRISRDIAMSGVRAT 259

Query: 160 EFSKLVEAAMREVRFALEVSSNGTFKSKHGVKSGSKSSSSK-------EIQGIGGTIRRS 219
            +++    A  E R A    SNG   +K  + S   + + K         +G    +   
Sbjct: 260 TYAEKDNTARWEARKA----SNGGGDNKRKLPSNQHNEADKRNKIGSNNYKGKKPYVEYP 319

Query: 220 LCSECNRYHWGQCPSETHTCYECAQPCHFKR 229
           LC  C R H G+C  +  TCY+C QP H+K+
Sbjct: 320 LCPTCGRKHPGECRLKGKTCYKCGQPGHYKK 345

[Close]
BLAST of ClCG09G013920 vs. TrEMBL
Match: A5APH1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044466 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 63/218 (28.90%), Postives = 101/218 (46.33%), Query Frame = 1 

Query: 30  LDLEKQYGIERLKSLEKVTLVVLLLQKGAEDWWQVSENRRLHMDEP--TWREFKKTFYEK 89
           L +EK +G+      +K +    +L K  + WW+++  RRL  D+   TWR+F++ FY+K
Sbjct: 125 LKMEKFFGVIDCSEEQKASYAAFMLDKETDHWWRMT--RRLLEDQGPITWRQFREAFYKK 184

Query: 90  FYPQSFRDAKRNEFLRLVQGNMSVAEYEKKYMELPKRFEEGLRKEICTPVTTSAKWNEFS 149
           ++P S R  K  EF+RL QG+M+VA+YE K+ EL  RF   L        T   K  +F 
Sbjct: 185 YFPDSVRRQKVGEFIRLEQGDMTVAQYEAKFTEL-SRFSPQL------IATEEEKALKFQ 244

Query: 150 KLVEAAMREVRFALEVSSNGTFKSK----------HGVK------SGSKSSSSKEIQGIG 209
             ++  ++     L +     ++ +          HG +      SG   +  K  Q + 
Sbjct: 245 DXLKPYLKNKXSILXLGXYSEYREQQRKRNRSDGAHGNQXQRRSTSGRNQNKGKAAQNLD 304

Query: 210 GTIRRSLCSECNRYHWGQ-CPSETHTCYECAQPCHFKR 229
           G      C  C + H G+ C  ET  C+ C +  H  R
Sbjct: 305 GA-----CPTCGKKHGGRPCYRETGACFGCGKQGHLIR 328

[Close]
BLAST of ClCG09G013920 vs. TrEMBL
Match: Q84KB1_CUCME (Gag-protease polyprotein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 63/219 (28.77%), Postives = 100/219 (45.66%), Query Frame = 1 

Query: 45  EKVTLVVLLLQKGAEDWWQVSENRRLHMD--EPTWREFKKTFYEKFYPQSFRDAKRNEFL 104
           +KV   V +L      WW+ +E R L  D  + TW++FK++FY KF+  S RDAKR EFL
Sbjct: 101 QKVQCAVFMLTDRGTAWWETTE-RMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFL 160

Query: 105 RLVQGNMSVAEYEKKYMELPK--------------RFEEGLRKEICTPVTTSAKWNEFSK 164
            L QG+M+V +Y+ ++  L +              +F  GLR +I   V         + 
Sbjct: 161 NLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP----AT 220

Query: 165 LVEAAMREVRFALEVSSNGTFKSKHGVKSGSKSSSSKEIQGI-------GGTIR------ 224
             +A    V  +L+  +N +  +  G  SG K  + ++   +       GG  R      
Sbjct: 221 HADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKP 280

Query: 225 ---------RSLCSECNRYHWGQCPSETHTCYECAQPCH 226
                    + LC+ C ++H G+C   T TC++C Q  H
Sbjct: 281 FEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGH 314

[Close]
BLAST of ClCG09G013920 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 63/219 (28.77%), Postives = 100/219 (45.66%), Query Frame = 1 

Query: 45  EKVTLVVLLLQKGAEDWWQVSENRRLHMD--EPTWREFKKTFYEKFYPQSFRDAKRNEFL 104
           +KV   V +L      WW+ +E R L  D  + TW++FK++FY KF+  S RDAKR EFL
Sbjct: 373 QKVQCAVFMLTDRGTAWWETTE-RMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFL 432

Query: 105 RLVQGNMSVAEYEKKYMELPK--------------RFEEGLRKEICTPVTTSAKWNEFSK 164
            L QG+M+V +Y+ ++  L +              +F  GLR +I   V         + 
Sbjct: 433 NLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP----AT 492

Query: 165 LVEAAMREVRFALEVSSNGTFKSKHGVKSGSKSSSSKEIQGI-------GGTIR------ 224
             +A    V  +L+  +N +  +  G  SG K  + ++   +       GG  R      
Sbjct: 493 HADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQQKP 552

Query: 225 ---------RSLCSECNRYHWGQCPSETHTCYECAQPCH 226
                    + LC+ C ++H G+C   T TC++C Q  H
Sbjct: 553 FEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGH 586

[Close]
BLAST of ClCG09G013920 vs. TrEMBL
Match: F6GZX4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09780 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 57/222 (25.68%), Postives = 107/222 (48.20%), Query Frame = 1 

Query: 30  LDLEKQYGIERLKSLEKVTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFY 89
           L +EK +G+      +K +    +L K  + WW++++         TWR+F++ FY+K++
Sbjct: 208 LKMEKFFGVIDCSEEQKASYAAFMLDKETDHWWRMTKRLLEDQGPITWRQFREAFYKKYF 267

Query: 90  PQSFRDAKRNEFLRLVQGNMSVAEYEKKYMELPK--------------RFEEGLRKEICT 149
           P S R  K  EF+RL Q +M+VA+YE K+ +L +              +F++GL+  +  
Sbjct: 268 PDSVRWQKVGEFIRLEQRDMTVAQYEAKFTKLSRFSPQLIAIEEEKALKFQDGLKPYLKN 327

Query: 150 PVTTSAKWNEFSKLVEAAMREVRFALEVSSNGTFKSK-------HGVKSGSKSSSSK-EI 209
            ++   K   +S++V+ A+   +   E+      + K       HG ++  +S+S + + 
Sbjct: 328 KISI-LKLGVYSEVVDRALITEKDNEELHQYREQQRKRNRSDGAHGNQAQRRSTSGRNQN 387

Query: 210 QGIGGTIRRSLCSECNRYHWGQ-CPSETHTCYECAQPCHFKR 229
           +G         C  C + H G+ C  ET  C+ C +  H  R
Sbjct: 388 KGKAAQNLDGACPTCGKKHGGRPCYRETGACFGCGKQGHLIR 428

[Close]
BLAST of ClCG09G013920 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 81/181 (44.75%), Postives = 112/181 (61.88%), Query Frame = 1 

Query: 32  LEKQYGIERLKSLEKVTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFYPQ 91
           LEK + + R     KV L   LL+KGA+ WW+  E+R    +E +W EFKK FYEK+YP+
Sbjct: 98  LEKCFKVMRCLDDRKVELATFLLKKGADYWWRTFESRYHDTNEISWNEFKKAFYEKYYPR 157

Query: 92  SFRDAKRNEFLRLVQGNMSVAEYEKKYMELP--------------KRFEEGLRKEICTPV 151
           S++DAKR+EF RLV G+M++AEYEKKY++L               KRFE+GLR+EI TPV
Sbjct: 158 SYKDAKRSEFFRLVLGSMTIAEYEKKYIKLSKYATSMIEDEIDRCKRFEDGLREEIRTPV 217

Query: 152 TTSAKWNEFSKLVEAAMR------EVRFALEVSSNGTFKSKHGVK--SGSKSSSSKEIQG 191
           T S++W EFSKLVE A+R      E +   EVS N +     GV     ++  + + +QG
Sbjct: 218 TASSEWKEFSKLVETAVRVEKSLAERKNEKEVSRNVSTAITQGVSRDKSNRQGNRRFVQG 277

[Close]
BLAST of ClCG09G013920 vs. NCBI nr
Match: gi|659118041|ref|XP_008458920.1| (PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 70/172 (40.70%), Postives = 92/172 (53.49%), Query Frame = 1 

Query: 46  KVTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFYPQSFRDAKRNEFLRLV 105
           KV L   LLQK AE WW+    RR       W+ F+  F EK+YP ++ +AKR+EFL L 
Sbjct: 8   KVRLATFLLQKEAEGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELK 67

Query: 106 QGNMSVAEYEKKYMELPK--------------RFEEGLRKEICTPVTTSAKWNEFSKLVE 165
           QG++S+AEYE+KY EL +              RFE GLR EI TPVT  AKW  FS+LVE
Sbjct: 68  QGSLSMAEYERKYTELSRYAGMIMASESDRCHRFERGLRFEIRTPVTAIAKWTNFSQLVE 127

Query: 166 AAMR------EVRFALEVSSNGTFKSKHGVKSGSKSSSSKEIQGIGGTIRRS 198
            A+R      E + A+E+S   +  S        + +S   + G     RRS
Sbjct: 128 TALRVEQSIVEEKSAMELSRGVSTTSGIRGPEQRRFTSGVNVSGCQDFKRRS 179

[Close]
BLAST of ClCG09G013920 vs. NCBI nr
Match: gi|985461745|ref|XP_015388537.1| (PREDICTED: uncharacterized protein LOC107178182 [Citrus sinensis])

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 82/252 (32.54%), Postives = 112/252 (44.44%), Query Frame = 1 

Query: 47  VTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFYPQSFRDAKRNEFLRLVQ 106
           ++    LL+  A  WWQ  E R       TW  F+K FY+ ++P  ++D KR+EF RLVQ
Sbjct: 9   LSFATFLLEDRAYHWWQTIERRYQGHAAITWAIFRKEFYDHYFPVVYQDIKRSEFPRLVQ 68

Query: 107 GNMSVAEYEKKYMELPK--------------RFEEGLRKEICTPVTTSAKWNEFSKLVEA 166
           G+M+V EYEKK+++L K              +FEEGLR EI T +T S ++ EF ++VEA
Sbjct: 69  GSMTVEEYEKKFIDLSKFAISTVDDERERCRQFEEGLRFEIRTTITAS-RYTEFVEVVEA 128

Query: 167 AMR------EVR--FALEVSSN-----GTFKSKHGVKSGSKSSSSKEI---QGIGG---- 226
           A R      E R   AL    N     G   S+   + G+ +S S  I   QGIGG    
Sbjct: 129 AKRVEHNISEGRRVQALRQKRNQSWTKGASSSRPPKRRGTYASYSNNIQMSQGIGGKGDM 188

Query: 227 ------------------------------------TIRRSLCSECNRYHWGQCPSETHT 229
                                               +I+ + C  C + H GQC      
Sbjct: 189 RQDVSHGLVQQSIVSNVKAQGQYDRNSGGHRCDHSRSIQPTSCPSCGKNHPGQCHVGDKV 248

[Close]
BLAST of ClCG09G013920 vs. NCBI nr
Match: gi|659113911|ref|XP_008456815.1| (PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 8.8e-20
Identity = 62/137 (45.26%), Postives = 77/137 (56.20%), Query Frame = 1 

Query: 32  LEKQYGIERLKSLEKVTLVVLLLQKGAEDWWQVSENRRLHMDEPTWREFKKTFYEKFYPQ 91
           LEK + +       KV L   LLQK AE WW+    R        W+ F+  F EK+YP 
Sbjct: 31  LEKCFDVMSCPQERKVRLATFLLQKEAEGWWKSIIARCNDARTLDWQTFRGIFEEKYYPT 90

Query: 92  SFRDAKRNEFLRLVQGNMSVAEYEKKYMELP--------------KRFEEGLRKEICTPV 151
           ++ +AKR+EFL L QG++SVAEYE KY EL               +RFE GLR EI T V
Sbjct: 91  TYCEAKRDEFLELKQGSLSVAEYEMKYTELSRYAEMIVASESERCRRFERGLRFEIRTLV 150

Query: 152 TTSAKWNEFSKLVEAAM 155
           TT AKW  FS+LVE A+
Sbjct: 151 TTIAKWTNFSQLVEIAL 167

[Close]
BLAST of ClCG09G013920 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 72/196 (36.73%), Postives = 97/196 (49.49%), Query Frame = 1 

Query: 86  EKFYPQSFRDAKRNEFLRLVQGNMSVAEYEKKYMELP--------------KRFEEGLRK 145
           EK+YP ++ +AKR+EFL L QG+ SVAEYE+KY EL               +RFE GLR 
Sbjct: 73  EKYYPTTYCEAKRDEFLELKQGSFSVAEYERKYTELSRYAEMIVASESDMCRRFERGLRF 132

Query: 146 EICTPVTTSAKWNEFSKLVEAAMR------EVRFALEVSSNGTFKSKHGVKSGSKSSSSK 205
           EI T VT  AKW  FS+LVE A+R      E + A+E+S   +  S    +   + +   
Sbjct: 133 EIRTLVTAIAKWTNFSQLVETALRVEQSIVEEKSAMELSRGVSTTSGIRGREQRRFTPGV 192

Query: 206 EIQGI-------GGTIRRSLCS-----ECNRYHWGQCPSETHTCYECAQPCHFKR--PHL 248
            + G        GG   R + S      C + H GQC      CY C Q  HFKR  P L
Sbjct: 193 NVSGCQDFKRRSGGKPLRQMSSGSAYPSCGKSHRGQCLIGAGVCYRCGQTRHFKRDCPKL 252

The following BLAST results are available for this feature:
BLAST of ClCG09G013920 vs. TrEMBL
Match NameE-valueIdentityDescription
W1NRU2_AMBTC2.0e-1529.86Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s00876p000073... [more]
A5APH1_VITVI5.9e-1528.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044466 PE=4 SV=1[more]
Q84KB1_CUCME2.2e-1428.77Gag-protease polyprotein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB7_CUCME2.2e-1428.77Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
F6GZX4_VITVI2.2e-1425.68Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09780 PE=4 SV=... [more]
BLAST of ClCG09G013920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116534|ref|XP_008458118.1|1.0e-3144.75PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659118041|ref|XP_008458920.1|2.1e-2140.70PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo][more]
gi|985461745|ref|XP_015388537.1|6.7e-2032.54PREDICTED: uncharacterized protein LOC107178182 [Citrus sinensis][more]
gi|659113911|ref|XP_008456815.1|8.8e-2045.26PREDICTED: uncharacterized protein LOC103496653 [Cucumis melo][more]
gi|659112465|ref|XP_008456237.1|1.7e-1836.73PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G013920.1ClCG09G013920.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 49..127
score: 1.6