ClCG09G013830 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G013830
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr09 : 21674795 .. 21675537 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAGGGCTTCTCTCCATGGGAGACTGGGCAGAAGGGGCAACTTTATGTTGACGTGGTGATCAACGGTGAAGTTCGAGAGGTGTTGCTCGACACAAGGGCATCACACAATTTCGTCGATCCAAGTGAGGCCGTAATCCTTGGTCTTAAGGTCGTTAGGGGAGGTGGAAAGATGAAGGCGGTGAACTCAAGAACCATAGAAGCTGAGGAACTTGTCAAAGATGTTCTCCTAAAGGTGGGAACATGGCGAGGTTTGATGGATGTCACCATGGTCCCAATGGATGACTACAAGGTGGTGTTAGGTTTGGAGTTCTTTAGGAAGGCGAATGCCACGCATGCACCCGCCTTAAAACTATTGATTGTGTTTGATGAACACAGAATCCGCATGGTCCCTTTGAAAAACAAGGAGCTACTCGAGACGAAGGTGATGTCACACTTCGCTTGGTGAAGGGATGCACGAGAAGAAGAAGGCACTCAAAGAAGCCCCACGCAATGAGGGCATTGCGAAATCAGGTGGGGGAGGGTGTTACCTATTAGAAAAATGGCCCAACAAATCACGCCACAAACTCCCATGACTCATCTAGCATAGCCAAGGATGGGTCGAGGAGGAAGAGCCAACAGGCTGCTAAGCCTGGCACACGCAGGTGCCAAGACGACACACAAGGCTACTCAAGTCGTCAGGCCACGCCCATGCCTCAGGCGTGTGCCTTAGCCGCAGCCCGACACCAGCTAAGTGCGTAG

mRNA sequence

ATGACCAAGGGCTTCTCTCCATGGGAGACTGGGCAGAAGGGGCAACTTTATGTTGACGTGGTGATCAACGGTGAAGTTCGAGAGGTGTTGCTCGACACAAGGGCATCACACAATTTCGTCGATCCAAGTGAGGCCGTAATCCTTGGTCTTAAGGTCGTTAGGGGAGGTGGAAAGATGAAGGCGGTGAACTCAAGAACCATAGAAGCTGAGGAACTTGTCAAAGATGTTCTCCTAAAGGTGGGAACATGGCGAGGTTTGATGGATGTCACCATGGTCCCAATGGATGACTACAAGGTGGTGTTAGGTTTGGAGTTCTTTAGGAAGGCGAATGCCACGCATGCACCCGCCTTAAAACTATTGATTGTGTTTGATGAACACAGAATCCGCATGGTCCCTTTGAAAAACAAGGAGCTACTCGAGACGAAGAAAAATGGCCCAACAAATCACGCCACAAACTCCCATGACTCATCTAGCATAGCCAAGGATGGGTCGAGGAGGAAGAGCCAACAGGCTGCTAAGCCTGGCACACGCAGGTGCCAAGACGACACACAAGGCTACTCAAGTCGTCAGGCCACGCCCATGCCTCAGGCGTGTGCCTTAGCCGCAGCCCGACACCAGCTAAGTGCGTAG

Coding sequence (CDS)

ATGACCAAGGGCTTCTCTCCATGGGAGACTGGGCAGAAGGGGCAACTTTATGTTGACGTGGTGATCAACGGTGAAGTTCGAGAGGTGTTGCTCGACACAAGGGCATCACACAATTTCGTCGATCCAAGTGAGGCCGTAATCCTTGGTCTTAAGGTCGTTAGGGGAGGTGGAAAGATGAAGGCGGTGAACTCAAGAACCATAGAAGCTGAGGAACTTGTCAAAGATGTTCTCCTAAAGGTGGGAACATGGCGAGGTTTGATGGATGTCACCATGGTCCCAATGGATGACTACAAGGTGGTGTTAGGTTTGGAGTTCTTTAGGAAGGCGAATGCCACGCATGCACCCGCCTTAAAACTATTGATTGTGTTTGATGAACACAGAATCCGCATGGTCCCTTTGAAAAACAAGGAGCTACTCGAGACGAAGAAAAATGGCCCAACAAATCACGCCACAAACTCCCATGACTCATCTAGCATAGCCAAGGATGGGTCGAGGAGGAAGAGCCAACAGGCTGCTAAGCCTGGCACACGCAGGTGCCAAGACGACACACAAGGCTACTCAAGTCGTCAGGCCACGCCCATGCCTCAGGCGTGTGCCTTAGCCGCAGCCCGACACCAGCTAAGTGCGTAG

Protein sequence

MTKGFSPWETGQKGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEELVKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVPLKNKELLETKKNGPTNHATNSHDSSSIAKDGSRRKSQQAAKPGTRRCQDDTQGYSSRQATPMPQACALAAARHQLSA

Homology

[Close]

BLAST of ClCG09G013830 vs. TrEMBL
Match: A5B1A3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 13  KGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEEL 72
           KG +YV+ ++NG+V + L+DT A+HNFV   +A  L L+  + GG +KAVNS    + E+
Sbjct: 406 KGLMYVEALVNGKVTKALVDTGATHNFVSEEKARRLELQASKEGGWLKAVNSAAKPSHEV 465

Query: 73  VKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVP 132
              V + +G+W G +D T+ PMDD+K+VLG++F +K  A   P L+ + + +E +  MVP
Sbjct: 466 ACGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLRSMAILEEEKPCMVP 525

Query: 133 LKNKELLET 142
              + +L+T
Sbjct: 526 TVTEGMLKT 534

[Close]

BLAST of ClCG09G013830 vs. TrEMBL
Match: A5AQF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014071 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.8e-20
Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = 1


Query: 13  KGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEEL 72
           KG +YV+ ++NG+  + L+DT A+HNFV   EA  L L+  + GG +KAVNS    +  +
Sbjct: 132 KGLMYVEAIVNGKATKALVDTGATHNFVSEDEARRLELQASKEGGWLKAVNSTAKPSHGV 191

Query: 73  VKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVP 132
            + V + +G+W G +D T+ PMDD+K+VLG++F +K  A   P L+ +   +E +  MVP
Sbjct: 192 ARGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLRSMAFLEEEKSCMVP 251

Query: 133 LKNKELLET 142
              +  L+T
Sbjct: 252 TVTEGTLKT 260

[Close]

BLAST of ClCG09G013830 vs. TrEMBL
Match: A5B4X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 1


Query: 13  KGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEEL 72
           KG +YV+ ++NG+  + L+DT A+HNFV   EA  L L+  + GG +KAVNS    +  +
Sbjct: 349 KGLMYVEALVNGKATKALVDTGATHNFVSKDEARRLELQASKEGGWLKAVNSAAKPSHGV 408

Query: 73  VKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVP 132
            ++V + +G+W G +D T+ PMDD+K+VLG++F +K  A   P L+ + + +E +  MVP
Sbjct: 409 AREVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVXAVPLPFLRSMAILEEEKPCMVP 468

[Close]

BLAST of ClCG09G013830 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.6e-19
Identity = 53/140 (37.86%), Postives = 86/140 (61.43%), Query Frame = 1


Query: 3   KGFSPWETGQKGQL-YVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKA 62
           K  S ++T Q  +L YV+ ++NG+  + L+DT A+HNFV   EA  L L+  + GG +KA
Sbjct: 422 KAKSMFKTPQSKRLMYVEALVNGKATKALVDTGATHNFVAEDEARRLELQASKEGGWLKA 481

Query: 63  VNSRTIEAEELVKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLI 122
           VNS    +  + + V + +G+W G +D T+ PMDD+K+VLG++F +K  A   P L+ + 
Sbjct: 482 VNSAAKPSHGVARGVSMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLRSMA 541

Query: 123 VFDEHRIRMVPLKNKELLET 142
           + +E +  MVP   +  L+T
Sbjct: 542 ILEEEKPCMVPTVTEGTLKT 561

[Close]

BLAST of ClCG09G013830 vs. TrEMBL
Match: A5BX03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 13  KGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEEL 72
           K  +YV+ ++NG+  + L+DT A+HNFV   EA  L L+  + GG +KAVNS    +  +
Sbjct: 428 KXLMYVETLVNGKATKALVDTGATHNFVSEDEARRLELQASKEGGWLKAVNSAAKPSHGV 487

Query: 73  VKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVP 132
            + V + +G W G +D T+ PMDD+K+VLG++F +K  A   P L+ + + +E +  MVP
Sbjct: 488 ARGVTMHIGLWEGRVDFTVAPMDDFKMVLGMDFLQKVKAVPLPFLRSMAILEEEKPCMVP 547

[Close]

BLAST of ClCG09G013830 vs. NCBI nr
Match: gi|729307976|ref|XP_010529090.1| (PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana])

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 9   ETGQKGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIE 68
           ET  KG LY DV I G++  V+ DT ASHNF+D  EA  L L+V   GG +KAVNS    
Sbjct: 424 ETKSKGLLYADVEIYGKIVPVMFDTGASHNFMDAGEAKRLKLRVDGSGGTVKAVNSPAQN 483

Query: 69  AEELVKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRI 128
           A  + +DV +++G W G  D T++PMDD++VVLGL FFR  +     +   L++ D+ + 
Sbjct: 484 ASGIARDVRIQIGDWVGKTDFTILPMDDFRVVLGLTFFRSVSTFIPASTTTLVIIDKDKP 543

Query: 129 RMVPLK 135
            +VPLK
Sbjct: 544 TIVPLK 549

[Close]

BLAST of ClCG09G013830 vs. NCBI nr
Match: gi|1000950906|ref|XP_015579415.1| (PREDICTED: uncharacterized protein LOC107261855 [Ricinus communis])

HSP 1 Score: 109.8 bits (273), Expect = 6.0e-21
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 12  QKGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEE 71
           ++G LYVD  I G+    +L+T A+HNF+D  EA  LGLK+ +G   +KAVNS       
Sbjct: 319 ERGLLYVDAFIEGKAVCPMLNTGATHNFMDVHEAKRLGLKLSKGVSTIKAVNSEAKPVHG 378

Query: 72  LVKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMV 131
           + ++V ++VG W+ ++D T+VPMDD+K V GL FF KA A   P++  L++ D  ++R++
Sbjct: 379 IAENVKVQVGDWQVMLDFTIVPMDDFKTVFGLAFFYKAYAIPVPSISSLVILDASKLRVI 438

Query: 132 PLKN 136
           PLK+
Sbjct: 439 PLKS 442

[Close]

BLAST of ClCG09G013830 vs. NCBI nr
Match: gi|802760765|ref|XP_012089545.1| (PREDICTED: uncharacterized protein LOC105647934, partial [Jatropha curcas])

HSP 1 Score: 109.4 bits (272), Expect = 7.8e-21
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 1


Query: 13  KGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEEL 72
           KG LY DV +N +   V+LDT A+ NF+D  EA  LGL +V G G +K VN++       
Sbjct: 223 KGLLYADVAVNEKSTSVMLDTGATDNFMDVEEAKRLGLNIVGGSGTVKTVNAKEKPIMGF 282

Query: 73  VKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVP 132
            K V +K+G+W G +D T+VPMDD+ +VLGL FFRK  A   P    LI+ +  R  +VP
Sbjct: 283 AKAVTVKIGSWCGKLDFTVVPMDDFDIVLGLAFFRKVRALPFPYASSLIILEGERPCIVP 342

Query: 133 LKNKE 138
           LK+ E
Sbjct: 343 LKSIE 347

[Close]

BLAST of ClCG09G013830 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 57/135 (42.22%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 9   ETGQKGQLYVDVVINGEV-REVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTI 68
           +T +KG ++VD  ING+  + V++DT A+HNF   SEA  LGL++ +  G+MKAVNS+ +
Sbjct: 250 KTNEKGLMFVDATINGKAAKSVMVDTGATHNFCSESEARRLGLRLQKDAGQMKAVNSKAL 309

Query: 69  EAEELVKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHR 128
               L K V LK+GTW   +D+ +VPMDD+ V+LG++F  K  A   PA   L++  E +
Sbjct: 310 PTVGLAKQVPLKLGTWEDRVDLIVVPMDDFDVILGMDFLVKKKAIPIPAANSLLMMGE-Q 369

Query: 129 IRMVPLKNKELLETK 143
             +VP++ K+L   K
Sbjct: 370 TGVVPVQRKQLNNPK 383

[Close]

BLAST of ClCG09G013830 vs. NCBI nr
Match: gi|729315985|ref|XP_010531750.1| (PREDICTED: uncharacterized protein LOC104807978, partial [Tarenaya hassleriana])

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 1


Query: 13  KGQLYVDVVINGEVREVLLDTRASHNFVDPSEAVILGLKVVRGGGKMKAVNSRTIEAEEL 72
           KG LY DV I G++   + DT ASHNF+D  EA  L LKV   GG +KAVNS    A  L
Sbjct: 432 KGLLYADVEIRGKLVPAMFDTGASHNFMDVGEASRLKLKVDGNGGTVKAVNSPAQTASGL 491

Query: 73  VKDVLLKVGTWRGLMDVTMVPMDDYKVVLGLEFFRKANATHAPALKLLIVFDEHRIRMVP 132
           V+DV +++G W G  D T++PMDD++VVLGL FFR  +     A   L++ D+    +VP
Sbjct: 492 VRDVRIRIGDWTGKTDFTILPMDDFRVVLGLTFFRSVSTFIPAATTALVIVDKDIPTVVP 551

Query: 133 LKN 136
           L++
Sbjct: 552 LRS 554

The following BLAST results are available for this feature:

BLAST of ClCG09G013830 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B1A3_VITVI	1.6e-20	39.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1	[more]
A5AQF1_VITVI	7.8e-20	38.76	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014071 PE=4 SV=1	[more]
A5B4X8_VITVI	1.3e-19	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1	[more]
A5BDH9_VITVI	6.6e-19	37.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1	[more]
A5BX03_VITVI	2.5e-18	39.17	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1	[more]

BLAST of ClCG09G013830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729307976\|ref\|XP_010529090.1\|	2.7e-21	45.24	PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana]	[more]
gi\|1000950906\|ref\|XP_015579415.1\|	6.0e-21	42.74	PREDICTED: uncharacterized protein LOC107261855 [Ricinus communis]	[more]
gi\|802760765\|ref\|XP_012089545.1\|	7.8e-21	45.60	PREDICTED: uncharacterized protein LOC105647934, partial [Jatropha curcas]	[more]
gi\|1009161831\|ref\|XP_015899105.1\|	1.0e-20	42.22	PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba]	[more]
gi\|729315985\|ref\|XP_010531750.1\|	1.7e-20	46.34	PREDICTED: uncharacterized protein LOC104807978, partial [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021109	Peptidase_aspartic_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G013830.1	ClCG09G013830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain	unknown	SSF50630	Acid proteases	coord: 13..111 score: 4.7
None	No IPR available	PFAM	PF13650	Asp_protease_2	coord: 18..105 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G013830	MELO3C014365	Melon (DHL92) v3.5.1	mewcgB362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G013830	Cucurbita pepo (Zucchini)	cpewcgB219
ClCG09G013830	Cucurbita pepo (Zucchini)	cpewcgB575
ClCG09G013830	Bottle gourd (USVL1VR-Ls)	lsiwcgB211
ClCG09G013830	Cucumber (Gy14) v2	cgybwcgB388
ClCG09G013830	Melon (DHL92) v3.6.1	medwcgB356
ClCG09G013830	Silver-seed gourd	carwcgB0627
ClCG09G013830	Silver-seed gourd	carwcgB0712
ClCG09G013830	Watermelon (97103) v2	wcgwmbB035
ClCG09G013830	Wax gourd	wcgwgoB036
ClCG09G013830	Wax gourd	wcgwgoB045
ClCG09G013830	Cucumber (Gy14) v1	cgywcgB329
ClCG09G013830	Cucurbita maxima (Rimu)	cmawcgB083
ClCG09G013830	Cucurbita maxima (Rimu)	cmawcgB443
ClCG09G013830	Cucurbita moschata (Rifu)	cmowcgB068
ClCG09G013830	Cucurbita moschata (Rifu)	cmowcgB442
ClCG09G013830	Wild cucumber (PI 183967)	cpiwcgB441
ClCG09G013830	Cucumber (Chinese Long) v2	cuwcgB422
ClCG09G013830	Watermelon (97103) v1	wcgwmB011