ClCG09G012880 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G012880
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionC-end truncated polyprotein
LocationCG_Chr09 : 15805786 .. 15806871 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTAAAGGTTGGTGTACAACTAATGGGCTTTGAGAATGCCCAAAGCCTATGGGAAGCCATCCATGCTCCACTTAGTGTACAATCAAGAGCTGAGGAAGATTGCTTACGACATGTCTTCCAACAAACTTGTAAAGCTAATTCGACAATATCTTAGTATTTGAAACTAATGAAATTGCATATGATAATTTAACACAAGTTGGTAGTCTGGTGACAACTTGTAATTTAGTTTCCCAAGTGTTGCTTAGACTGGATGAAGAATACAATCCAGTGTTGGTTGTACTCCAAAGTAAGCCTGACATCTCCTAACTTGATATGTAGTCAGAACTACTCTCATTTGAGAAGCAATTGGAACACCAAAACACAACAAAATCGACAGTATCATTTGGCCATAATGTTACTGTTAATCTGGTGTTTAATAGAAATCCATCTTTATCTAAATCACCTAGTCGTATAGTCATCAGGGCAACACCATCAAACATAACTTCACTGGATTGAGCGGCAATTCACAATTTAATGGTGGATGAAACAGAGGCAAGGGTCATAGCAGGGGAAACCGACCGACATGTTAAGTGTGCACCAAATATTGACACACTGTAGACATGTGTTATCAAAGGTACAACAAGGAGTTTGTACCAAATAAAAATCAGGGAAAAGGTAACAACACTTGAAGGTCCTTTGGACAAAATCCTGCTACCTTTATAACCACTCATAACCCAAATCCATTTGTAGCCACACTTGAAACCATAGGAGACTTCAATTGGTATGCTGGTAGTGGTGCCACAAACCATGTCACTGTGGATTTCAATCACATTGCAAATCCCACAGACTACACAGGTAATGAGCAAGTCACAGTAGGTAATGGTGAAAGTTTGTGTATCTCTACTATTGGTAATTCATGTTTAAATACCAATAAATGTGATGTAAAATTAGAAAATGTGCTATGTGTACCTGTTATTGCCAAAAACCTAGTTAGTATATTGAAGCTAGCTTAGGATAATGCTATATTCGTTGAATTTCATGGTGATTTTTGTGTGATTAAGGACAAGCAGACAAGCAAAATTCTAGTGAGAGGAACACTTAA

mRNA sequence

ATGACCTTAAAGGTTGGTGTACAACTAATGGGCTTTGAGAATGCCCAAAGCCTATGGGAAGCCATCCATGCTCCACTTAGTGTACAATCAAGAGCTGAGGAAGATTGCTTACGACATGTCTTCCAACAAACTTTTTCCCAAGTGTTGCTTAGACTGGATGAAGAATACAATCCAGTGTTGGTTTCAGAACTACTCTCATTTGAGAAGCAATTGGAACACCAAAACACAACAAAATCGACAGTATCATTTGGCCATAATGTTACTGTTAATCTGGTGTTTAATAGAAATCCATCTTTATCTAAATCACCTAGTCCGGCAATTCACAATTTAATGGTGGATGAAACAGAGGCAAGGGTCATAGCAGGGGAAACCGACCGACATGTTAAGTGTGCACCAAATATTGACACACTGTCCTTTGGACAAAATCCTGCTACCTTTATAACCACTCATAACCCAAATCCATTTGTAGCCACACTTGAAACCATAGGAGACTTCAATTGGTATGCTGGTAGTGGTGCCACAAACCATGTCACTGTGGATTTCAATCACATTGCAAATCCCACAGACTACACAGGTAATGAGCAAGTCACAGTAGGTAATGGTGAAAGTTTGTGTATCTCTACTATTGGACAAGCAGACAAGCAAAATTCTAGTGAGAGGAACACTTAA

Coding sequence (CDS)

ATGACCTTAAAGGTTGGTGTACAACTAATGGGCTTTGAGAATGCCCAAAGCCTATGGGAAGCCATCCATGCTCCACTTAGTGTACAATCAAGAGCTGAGGAAGATTGCTTACGACATGTCTTCCAACAAACTTTTTCCCAAGTGTTGCTTAGACTGGATGAAGAATACAATCCAGTGTTGGTTTCAGAACTACTCTCATTTGAGAAGCAATTGGAACACCAAAACACAACAAAATCGACAGTATCATTTGGCCATAATGTTACTGTTAATCTGGTGTTTAATAGAAATCCATCTTTATCTAAATCACCTAGTCCGGCAATTCACAATTTAATGGTGGATGAAACAGAGGCAAGGGTCATAGCAGGGGAAACCGACCGACATGTTAAGTGTGCACCAAATATTGACACACTGTCCTTTGGACAAAATCCTGCTACCTTTATAACCACTCATAACCCAAATCCATTTGTAGCCACACTTGAAACCATAGGAGACTTCAATTGGTATGCTGGTAGTGGTGCCACAAACCATGTCACTGTGGATTTCAATCACATTGCAAATCCCACAGACTACACAGGTAATGAGCAAGTCACAGTAGGTAATGGTGAAAGTTTGTGTATCTCTACTATTGGACAAGCAGACAAGCAAAATTCTAGTGAGAGGAACACTTAA

Protein sequence

MTLKVGVQLMGFENAQSLWEAIHAPLSVQSRAEEDCLRHVFQQTFSQVLLRLDEEYNPVLVSELLSFEKQLEHQNTTKSTVSFGHNVTVNLVFNRNPSLSKSPSPAIHNLMVDETEARVIAGETDRHVKCAPNIDTLSFGQNPATFITTHNPNPFVATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTGNEQVTVGNGESLCISTIGQADKQNSSERNT
Homology
[Close]
BLAST of ClCG09G012880 vs. TrEMBL
Match: A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-07
Identity = 49/143 (34.27%), Postives = 66/143 (46.15%), Query Frame = 1 

Query: 1   MTLKVGVQLMGFENAQSLWEAIHAPLSVQSR------------------AEEDCLRHVFQ 60
           +T +V VQL+GF NA+ +WEA H    V+SR                    ED LR +  
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  QT---------------FSQVLLRLDEEYNPVLV--------------SELLSFEKQLEH 97
                             SQVLL LDE YNPV+V              S+LL FEK+L+H
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKH 145

[Close]
BLAST of ClCG09G012880 vs. TrEMBL
Match: A0A151RQY5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_033540 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 155 FVATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTGNEQVTVGNGESLCISTIGQADK 214
           F+AT  T+ D  WY  SGA++H+T D ++++  TDYTGN++V +GNG  L I  IG +  
Sbjct: 335 FMATPTTVLDPLWYPDSGASHHITNDESNLSVKTDYTGNDRVKIGNGSGLSIKHIGNSKF 394

Query: 215 QNSSERN 222
            +S   N
Sbjct: 395 YDSESNN 401

[Close]
BLAST of ClCG09G012880 vs. TrEMBL
Match: A5AG09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002117 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-06
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1 

Query: 136 TLSFGQNPATFITTHN-PNPFV--ATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTG 195
           T SF ++P T I   N PN  V  AT E I D NWY  SGA+NHVT + N++   T Y G
Sbjct: 312 TPSFQKSPQTQIQGGNKPNMQVLMATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYG 371

Query: 196 NEQVTVGNGE 203
           NEQV VGN +
Sbjct: 372 NEQVRVGNDQ 381

[Close]
BLAST of ClCG09G012880 vs. TrEMBL
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 57/212 (26.89%), Postives = 88/212 (41.51%), Query Frame = 1 

Query: 46  SQVLLRLDEEYNPVLV--------------SELLSFEKQLEH-QNTTKSTVSFGHNVTVN 105
           +Q L  LD EYNP++V              ++LL++E +LE   N +  T++   N++  
Sbjct: 79  TQTLAGLDNEYNPIVVQLSDKEHLTWVEMQAQLLTYENRLEQINNQSNLTLNPSSNISTI 138

Query: 106 LV----------------FNRNPSLSKSPSPAIHNLMVDETEARVIAGETDRHVKCAPNI 165
           L                  NR     +    A  + +V +   +   G    H  C    
Sbjct: 139 LYNRRGKSNAFGGGRGGQINRGARGGRGRGRATKDRIVCQVCCK--PGHAASH--CYHRF 198

Query: 166 DTLSFGQNPATFIT------THNPNPFVATLETIGDFNWYAGSGATNHVTVDFNHIANPT 219
           +    GQN     +       +N N +VA+  T+ D +WY  SGA+NHVT D N +    
Sbjct: 199 NKNYIGQNSDEQKSEKDKEQNYNFNAYVASPSTVEDLDWYFDSGASNHVTYDQNKVQEVN 258

[Close]
BLAST of ClCG09G012880 vs. TrEMBL
Match: A5APL5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039877 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.9e-06
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 

Query: 157 ATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTGNEQVTVGNGESLCISTIGQA 213
           AT + + D NWY  SGA+NHVT D  ++    +Y G++QV +GNG  L I  +GQ+
Sbjct: 212 ATPKVVNDTNWYPNSGASNHVTFDATNLMTKAEYYGSDQVHIGNGMDLSIKHVGQS 267

[Close]
BLAST of ClCG09G012880 vs. NCBI nr
Match: gi|1009107393|ref|XP_015879528.1| (PREDICTED: uncharacterized protein LOC107415674 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 164 DFNWYAGSGATNHVTVDFNHIANPTDYTGNEQVTVGNGESLCISTIGQADKQNSSERNT 223
           D NWY  SGATNHV  D +++    +Y G+ ++ VGNG+SL I++IGQ D   SS+R+T
Sbjct: 87  DPNWYLDSGATNHVVSDGDNLLQKLEYNGSNKLLVGNGQSLDIASIGQRDGSGSSQRST 145

[Close]
BLAST of ClCG09G012880 vs. NCBI nr
Match: gi|700210588|gb|KGN65684.1| (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 8.9e-07
Identity = 49/143 (34.27%), Postives = 66/143 (46.15%), Query Frame = 1 

Query: 1   MTLKVGVQLMGFENAQSLWEAIHAPLSVQSR------------------AEEDCLRHVFQ 60
           +T +V VQL+GF NA+ +WEA H    V+SR                    ED LR +  
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  QT---------------FSQVLLRLDEEYNPVLV--------------SELLSFEKQLEH 97
                             SQVLL LDE YNPV+V              S+LL FEK+L+H
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEKRLKH 145

[Close]
BLAST of ClCG09G012880 vs. NCBI nr
Match: gi|971563334|ref|XP_015167476.1| (PREDICTED: uncharacterized protein LOC107061943 [Solanum tuberosum])

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 

Query: 155 FVATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTGNEQVTVGNGESLCISTIGQADK 214
           F+A   T+ D  WY   GATNH+T D N++    DY+GNEQ+ VGNG  L I  IG +  
Sbjct: 164 FIAQPNTVSDPAWYPDFGATNHLTNDLNNVTIRGDYSGNEQIVVGNGTGLPIYHIGDSKL 223

Query: 215 QNSS 219
            +SS
Sbjct: 224 LSSS 227

[Close]
BLAST of ClCG09G012880 vs. NCBI nr
Match: gi|1012333571|gb|KYP44960.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 155 FVATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTGNEQVTVGNGESLCISTIGQADK 214
           F+AT  T+ D  WY  SGA++H+T D ++++  TDYTGN++V +GNG  L I  IG +  
Sbjct: 335 FMATPTTVLDPLWYPDSGASHHITNDESNLSVKTDYTGNDRVKIGNGSGLSIKHIGNSKF 394

Query: 215 QNSSERN 222
            +S   N
Sbjct: 395 YDSESNN 401

[Close]
BLAST of ClCG09G012880 vs. NCBI nr
Match: gi|147765746|emb|CAN60188.1| (hypothetical protein VITISV_002117 [Vitis vinifera])

HSP 1 Score: 60.5 bits (145), Expect = 4.4e-06
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 1 

Query: 136 TLSFGQNPATFITTHN-PNPFV--ATLETIGDFNWYAGSGATNHVTVDFNHIANPTDYTG 195
           T SF ++P T I   N PN  V  AT E I D NWY  SGA+NHVT + N++   T Y G
Sbjct: 312 TPSFQKSPQTQIQGGNKPNMQVLMATPENICDTNWYPDSGASNHVTTNANNLVEHTPYYG 371

Query: 196 NEQVTVGNGE 203
           NEQV VGN +
Sbjct: 372 NEQVRVGNDQ 381

The following BLAST results are available for this feature:
BLAST of ClCG09G012880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXB7_CUCSA6.2e-0734.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1[more]
A0A151RQY5_CAJCA1.4e-0643.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A5AG09_VITVI3.1e-0651.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002117 PE=4 SV=1[more]
A0A151S6M8_CAJCA4.0e-0626.89Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5APL5_VITVI8.9e-0644.64Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039877 PE=4 SV=1[more]
BLAST of ClCG09G012880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009107393|ref|XP_015879528.1|4.0e-0749.15PREDICTED: uncharacterized protein LOC107415674 [Ziziphus jujuba][more]
gi|700210588|gb|KGN65684.1|8.9e-0734.27hypothetical protein Csa_1G496800 [Cucumis sativus][more]
gi|971563334|ref|XP_015167476.1|2.0e-0646.88PREDICTED: uncharacterized protein LOC107061943 [Solanum tuberosum][more]
gi|1012333571|gb|KYP44960.1|2.0e-0643.28Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
gi|147765746|emb|CAN60188.1|4.4e-0651.43hypothetical protein VITISV_002117 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G012880.1ClCG09G012880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G012880Watermelon (97103) v2wcgwmbB035
ClCG09G012880Wax gourdwcgwgoB034
ClCG09G012880Cucumber (Gy14) v1cgywcgB534
ClCG09G012880Cucurbita maxima (Rimu)cmawcgB440
ClCG09G012880Cucurbita moschata (Rifu)cmowcgB439
ClCG09G012880Wild cucumber (PI 183967)cpiwcgB178
ClCG09G012880Cucumber (Chinese Long) v2cuwcgB175
ClCG09G012880Cucumber (Chinese Long) v2cuwcgB184
ClCG09G012880Melon (DHL92) v3.5.1mewcgB309
ClCG09G012880Melon (DHL92) v3.5.1mewcgB310
ClCG09G012880Watermelon (97103) v1wcgwmB007
ClCG09G012880Cucurbita pepo (Zucchini)cpewcgB217
ClCG09G012880Bottle gourd (USVL1VR-Ls)lsiwcgB315
ClCG09G012880Cucumber (Gy14) v2cgybwcgB162
ClCG09G012880Cucumber (Gy14) v2cgybwcgB171
ClCG09G012880Melon (DHL92) v3.6.1medwcgB303
ClCG09G012880Melon (DHL92) v3.6.1medwcgB305
ClCG09G012880Silver-seed gourdcarwcgB0210
ClCG09G012880Cucumber (Chinese Long) v3cucwcgB182
ClCG09G012880Cucumber (Chinese Long) v3cucwcgB191