ClCG09G010040 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G010040
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionSerine/threonine-protein kinase
LocationCG_Chr09 : 9788318 .. 9788728 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTTGATAGTTGTTTCTCTTGTTGCATTCTCCCTTTGCTTAAAATGTTCCCCGTATCTATGGCAATAGCCATCGAATCTTTAAGTTCATCTTTGAAAGCTTCCAATCCCAACCTGGTGTGGAATTTGCCGATGCCTTTTGCTCTCTTTGTTTGCTTCCATCGGGTTTATCTAGTTCCTCTCCTTTTATTTCTGGTATTGCGTACTCAAGTAAAAGTTCCTATCATTTGGTCTGTTTGCATCTGTGCTACGGTGGTTGCTTCAGGTGCTCTTCACTTTCAATTTGACGGCAACCTTTGCCTTGTCCATGGCTCCGATGGCATTGTTTGGGAATCTAACACTGCGTTTGTGGCATTTTCTCTGTTCTACTCTAGAACCCCGACATCTTCTATTTGTACTTGTAAATAG

mRNA sequence

ATGAACCTTGATAGTTGTTTCTCTTGTTGCATTCTCCCTTTGCTTAAAATGTTCCCCGTATCTATGGCAATAGCCATCGAATCTTTAAGTTCATCTTTGAAAGCTTCCAATCCCAACCTGGTGTGGAATTTGCCGATGCCTTTTGCTCTCTTTGTTTGCTTCCATCGGGTTTATCTAGTTCCTCTCCTTTTATTTCTGGTATTGCGTACTCAAGTAAAAGTTCCTATCATTTGGTCTGTTTGCATCTGTGCTACGGTGGTTGCTTCAGGTGCTCTTCACTTTCAATTTGACGGCAACCTTTGCCTTGTCCATGGCTCCGATGGCATTGTTTGGGAATCTAACACTGCGTTTGTGGCATTTTCTCTGTTCTACTCTAGAACCCCGACATCTTCTATTTGTACTTGTAAATAG

Coding sequence (CDS)

ATGAACCTTGATAGTTGTTTCTCTTGTTGCATTCTCCCTTTGCTTAAAATGTTCCCCGTATCTATGGCAATAGCCATCGAATCTTTAAGTTCATCTTTGAAAGCTTCCAATCCCAACCTGGTGTGGAATTTGCCGATGCCTTTTGCTCTCTTTGTTTGCTTCCATCGGGTTTATCTAGTTCCTCTCCTTTTATTTCTGGTATTGCGTACTCAAGTAAAAGTTCCTATCATTTGGTCTGTTTGCATCTGTGCTACGGTGGTTGCTTCAGGTGCTCTTCACTTTCAATTTGACGGCAACCTTTGCCTTGTCCATGGCTCCGATGGCATTGTTTGGGAATCTAACACTGCGTTTGTGGCATTTTCTCTGTTCTACTCTAGAACCCCGACATCTTCTATTTGTACTTGTAAATAG

Protein sequence

MNLDSCFSCCILPLLKMFPVSMAIAIESLSSSLKASNPNLVWNLPMPFALFVCFHRVYLVPLLLFLVLRTQVKVPIIWSVCICATVVASGALHFQFDGNLCLVHGSDGIVWESNTAFVAFSLFYSRTPTSSICTCK
Homology
[Close]
BLAST of ClCG09G010040 vs. TrEMBL
Match: A0A0A0KCI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052130 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 1 

Query: 18  FPVSMAIAIESLSSSLKASNPNLVWNLPM-PFAL-FVCFHRVYLVPLLLFLVLRTQVKVP 77
           F VS + A  +L SSL+AS+PN  WN     F+L F           ++F        VP
Sbjct: 16  FAVSFSEAAITLGSSLRASDPNQAWNSSNGDFSLSFTPLGSSSFKAGIVFTG-----GVP 75

Query: 78  IIWSVCICATVVASGALHFQFDGNLCLVHGSDGIVWESNTAFVAFS 122
            IWS    ATV AS ALHFQ DGNL LV GS  +VWES+T  +  S
Sbjct: 76  TIWSAGGGATVDASSALHFQSDGNLRLVSGSGAVVWESHTTGLGVS 116

[Close]
BLAST of ClCG09G010040 vs. NCBI nr
Match: gi|700190883|gb|KGN46087.1| (hypothetical protein Csa_6G052130 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 1 

Query: 18  FPVSMAIAIESLSSSLKASNPNLVWNLPM-PFAL-FVCFHRVYLVPLLLFLVLRTQVKVP 77
           F VS + A  +L SSL+AS+PN  WN     F+L F           ++F        VP
Sbjct: 16  FAVSFSEAAITLGSSLRASDPNQAWNSSNGDFSLSFTPLGSSSFKAGIVFTG-----GVP 75

Query: 78  IIWSVCICATVVASGALHFQFDGNLCLVHGSDGIVWESNTAFVAFS 122
            IWS    ATV AS ALHFQ DGNL LV GS  +VWES+T  +  S
Sbjct: 76  TIWSAGGGATVDASSALHFQSDGNLRLVSGSGAVVWESHTTGLGVS 116

[Close]
BLAST of ClCG09G010040 vs. NCBI nr
Match: gi|449446482|ref|XP_004141000.1| (PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 1 

Query: 18  FPVSMAIAIESLSSSLKASNPNLVWNLPM-PFAL-FVCFHRVYLVPLLLFLVLRTQVKVP 77
           F VS + A  +L SSL+AS+PN  WN     F+L F           ++F        VP
Sbjct: 16  FAVSFSEAAITLGSSLRASDPNQAWNSSNGDFSLSFTPLGSSSFKAGIVFTG-----GVP 75

Query: 78  IIWSVCICATVVASGALHFQFDGNLCLVHGSDGIVWESNTAFVAFS 122
            IWS    ATV AS ALHFQ DGNL LV GS  +VWES+T  +  S
Sbjct: 76  TIWSAGGGATVDASSALHFQSDGNLRLVSGSGAVVWESHTTGLGVS 116

[Close]
BLAST of ClCG09G010040 vs. NCBI nr
Match: gi|659113648|ref|XP_008456685.1| (PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 48/106 (45.28%), Postives = 56/106 (52.83%), Query Frame = 1 

Query: 18  FPVSMAIAIESLSSSLKASNPNLVWNLPM-PFAL-FVCFHRVYLVPLLLFLVLRTQVKVP 77
           F VS + A  +L SSL+AS PN  WN     F+L F            + +V    V  P
Sbjct: 16  FAVSFSEAAITLGSSLRASVPNQAWNSSNGDFSLGFTPLDSSSGSSFKVGIVFTGGV--P 75

Query: 78  IIWSVCICATVVASGALHFQFDGNLCLVHGSDGIVWESNTAFVAFS 122
            IWS    ATV AS ALHFQ DGNL LV GS  +VWESNT  +  S
Sbjct: 76  TIWSAGGGATVDASSALHFQSDGNLRLVSGSGAVVWESNTTGLGVS 119

The following BLAST results are available for this feature:
BLAST of ClCG09G010040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCI5_CUCSA1.3e-0744.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052130 PE=4 SV=1[more]
BLAST of ClCG09G010040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190883|gb|KGN46087.1|1.9e-0744.34hypothetical protein Csa_6G052130 [Cucumis sativus][more]
gi|449446482|ref|XP_004141000.1|1.9e-0744.34PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g343... [more]
gi|659113648|ref|XP_008456685.1|2.4e-0745.28PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g343... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001480Bulb-type_lectin_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G010040.1ClCG09G010040.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001480Bulb-type lectin domainunknownSSF51110alpha-D-mannose-specific plant lectinscoord: 87..119
score: 1.5