ClCG09G007640 (gene) Watermelon (Charleston Gray)

NameClCG09G007640
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr09 : 6914207 .. 6914714 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGTAACATTATTGCAACTGAAGCATTACATTTCTTTCATAATGATCGTTTACTTGCTGGACTTACTAACATTAAGCATTACTCTCAAGTATTTTCTCTCTATAATAAAATGCCTAATGTGGTTGTTTATACCTCTTTGATTTTCCTGTGGTGGAAACTGGAAGGAGGCTAAACATTCGTTAAATGAGATGGTGGATCAAGGTGTTCGACCAAATATGGTCACATTCAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGTCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATACTATATTAA

mRNA sequence

ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGAAAGGTCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATACTATATTAA

Coding sequence (CDS)

ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGAAAGGTCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATACTATATTAA

Protein sequence

MEMPAPTPSITRILLQFTDFLSAPASNLLTKLHNRKGHPGSRVARVMIHTNVPDSFTYNSLIEGFCLVGDLNSARELFVSILY
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G007640.1ClCG09G007640.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 52..78
score: 4.4
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 56..79
score: 3.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 54..83
score: 9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G007640Bhi09G000964Wax gourdwcgwgoB074
The following gene(s) are paralogous to this gene:

None