ClCG09G005400 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G005400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr09 : 4757311 .. 4757785 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAAATATAGGTTGAATCTTAAAAGACATGTCGAGGTCGATAAAGCATCAAAGTTACCCTCCCAATCAATCTCTCTCAATGTGACCAAAAGAAGAAATCAAGAAGAAGACATAAGAAAACAAGTGTTGCAAGAAAAGTTGATTTTTGAAATGAAACATCATCAGTGGCCTCTAATTGAATCTCTATTAGGACCGAGCATAAAGCTACACATGATGTCTTTTCCTCATCTTTATAACAAAAATGAACATCTTCGTCTTCCAAATCTACCTAATCAATTCTCTAGATATGTTGATGGGAATACTAATAACAATCTTATTGCCCCTCTCATCAACAATAGATTGAGCAATGATGTTTCAAATGATTGTCTCTATCTCAAGATTTTGAGAGAATATGAAGAAGCTTACAAAGATTTCTATGGTCATAGTATGCATATCCAACCCTAGAGGGCCTAAGGCCAACTACAAAGGTTAG

mRNA sequence

ATGCAGAAATATAGGTTGAATCTTAAAAGACATGTCGAGGTCGATAAAGCATCAAAGTTACCCTCCCAATCAATCTCTCTCAATGTGACCAAAAGAAGAAATCAAGAAGAAGACATAAGAAAACAAGTGTTGCAAGAAAAGTTGATTTTTGAAATGAAACATCATCAGTGGCCTCTAATTGAATCTCTATTAGGACCGAGCATAAAGCTACACATGATGTCTTTTCCTCATCTTTATAACAAAAATGAACATCTTCGTCTTCCAAATCTACCTAATCAATTCTCTAGATATGTTGATGGGAATACTAATAACAATCTTATTGCCCCTCTCATCAACAATAGATTGAGCAATGATGTTTCAAATGATTGTCTCTATCTCAAGATTTTGAGAGAATATGAAGAAGCTTACAAAGATTTCTATGTATGCATATCCAACCCTAGAGGGCCTAAGGCCAACTACAAAGGTTAG

Coding sequence (CDS)

ATGCAGAAATATAGGTTGAATCTTAAAAGACATGTCGAGGTCGATAAAGCATCAAAGTTACCCTCCCAATCAATCTCTCTCAATGTGACCAAAAGAAGAAATCAAGAAGAAGACATAAGAAAACAAGTGTTGCAAGAAAAGTTGATTTTTGAAATGAAACATCATCAGTGGCCTCTAATTGAATCTCTATTAGGACCGAGCATAAAGCTACACATGATGTCTTTTCCTCATCTTTATAACAAAAATGAACATCTTCGTCTTCCAAATCTACCTAATCAATTCTCTAGATATGTTGATGGGAATACTAATAACAATCTTATTGCCCCTCTCATCAACAATAGATTGAGCAATGATGTTTCAAATGATTGTCTCTATCTCAAGATTTTGAGAGAATATGAAGAAGCTTACAAAGATTTCTATGTATGCATATCCAACCCTAGAGGGCCTAAGGCCAACTACAAAGGTTAG

Protein sequence

MQKYRLNLKRHVEVDKASKLPSQSISLNVTKRRNQEEDIRKQVLQEKLIFEMKHHQWPLIESLLGPSIKLHMMSFPHLYNKNEHLRLPNLPNQFSRYVDGNTNNNLIAPLINNRLSNDVSNDCLYLKILREYEEAYKDFYVCISNPRGPKANYKG
Homology
[Close]
BLAST of ClCG09G005400 vs. TrEMBL
Match: A0A0A0KB26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405920 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 49/136 (36.03%), Postives = 66/136 (48.53%), Query Frame = 1 

Query: 33  RNQEEDIRKQVLQE-KLIFEMKHHQ-WPLIESLLGPSIKLHMMSFPHLYNKNEHLRLPNL 92
           R QE ++R Q  QE + + +M   Q WPL ESL  P +    +  P  + KNE   L NL
Sbjct: 498 RYQEGNMRNQASQEDRFVHQMTRQQRWPLFESLSRPGLTQDNIILPQFFQKNEPNHLQNL 557

Query: 93  PNQFSRYVDGNTNNNLIAP--------------------LINNRLSNDVS-NDCLYLKIL 146
           PNQF  YVDGN N N+I                      LIN+ LS+ VS ND  +LK+ 
Sbjct: 558 PNQFPGYVDGNNNYNVIPSPNPTRYADGNNNIDVIASDHLINDGLSHHVSNNDPHHLKMW 617

[Close]
BLAST of ClCG09G005400 vs. TrEMBL
Match: A0A0A0KB26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405920 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.3e-02
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 

Query: 3   KYRLNLKR-HVEVDKASKLPSQSISLNVTKRRNQEEDIRKQ 43
           KYRLNLK+ ++E DKA  + SQSIS N  +RRNQ +++R Q
Sbjct: 243 KYRLNLKKGNLETDKALTVHSQSISFNTARRRNQGKNMRNQ 283

[Close]
BLAST of ClCG09G005400 vs. NCBI nr
Match: gi|700189753|gb|KGN44986.1| (hypothetical protein Csa_7G405920 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 49/136 (36.03%), Postives = 66/136 (48.53%), Query Frame = 1 

Query: 33  RNQEEDIRKQVLQE-KLIFEMKHHQ-WPLIESLLGPSIKLHMMSFPHLYNKNEHLRLPNL 92
           R QE ++R Q  QE + + +M   Q WPL ESL  P +    +  P  + KNE   L NL
Sbjct: 498 RYQEGNMRNQASQEDRFVHQMTRQQRWPLFESLSRPGLTQDNIILPQFFQKNEPNHLQNL 557

Query: 93  PNQFSRYVDGNTNNNLIAP--------------------LINNRLSNDVS-NDCLYLKIL 146
           PNQF  YVDGN N N+I                      LIN+ LS+ VS ND  +LK+ 
Sbjct: 558 PNQFPGYVDGNNNYNVIPSPNPTRYADGNNNIDVIASDHLINDGLSHHVSNNDPHHLKMW 617

[Close]
BLAST of ClCG09G005400 vs. NCBI nr
Match: gi|700189753|gb|KGN44986.1| (hypothetical protein Csa_7G405920 [Cucumis sativus])

HSP 1 Score: 45.1 bits (105), Expect = 1.3e-01
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 

Query: 3   KYRLNLKR-HVEVDKASKLPSQSISLNVTKRRNQEEDIRKQ 43
           KYRLNLK+ ++E DKA  + SQSIS N  +RRNQ +++R Q
Sbjct: 243 KYRLNLKKGNLETDKALTVHSQSISFNTARRRNQGKNMRNQ 283

The following BLAST results are available for this feature:
BLAST of ClCG09G005400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB26_CUCSA1.8e-0836.03Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405920 PE=4 SV=1[more]
A0A0A0KB26_CUCSA9.3e-0256.10Uncharacterized protein OS=Cucumis sativus GN=Csa_7G405920 PE=4 SV=1[more]
BLAST of ClCG09G005400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189753|gb|KGN44986.1|2.5e-0836.03hypothetical protein Csa_7G405920 [Cucumis sativus][more]
gi|700189753|gb|KGN44986.1|1.3e-0156.10hypothetical protein Csa_7G405920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G005400.1ClCG09G005400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G005400Cla97C09G167860Watermelon (97103) v2wcgwmbB035
ClCG09G005400Lsi02G024430Bottle gourd (USVL1VR-Ls)lsiwcgB159
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G005400Cucurbita moschata (Rifu)cmowcgB204
ClCG09G005400Cucurbita moschata (Rifu)cmowcgB299
ClCG09G005400Cucurbita moschata (Rifu)cmowcgB306
ClCG09G005400Cucurbita moschata (Rifu)cmowcgB375
ClCG09G005400Cucurbita moschata (Rifu)cmowcgB785
ClCG09G005400Wild cucumber (PI 183967)cpiwcgB278
ClCG09G005400Wild cucumber (PI 183967)cpiwcgB437
ClCG09G005400Wild cucumber (PI 183967)cpiwcgB555
ClCG09G005400Cucumber (Chinese Long) v2cuwcgB269
ClCG09G005400Cucumber (Chinese Long) v2cuwcgB526
ClCG09G005400Melon (DHL92) v3.5.1mewcgB162
ClCG09G005400Melon (DHL92) v3.5.1mewcgB446
ClCG09G005400Watermelon (97103) v1wcgwmB007
ClCG09G005400Watermelon (97103) v1wcgwmB016
ClCG09G005400Cucurbita pepo (Zucchini)cpewcgB126
ClCG09G005400Cucurbita pepo (Zucchini)cpewcgB280
ClCG09G005400Bottle gourd (USVL1VR-Ls)lsiwcgB217
ClCG09G005400Cucumber (Gy14) v2cgybwcgB385
ClCG09G005400Cucumber (Gy14) v2cgybwcgB486
ClCG09G005400Melon (DHL92) v3.6.1medwcgB155
ClCG09G005400Melon (DHL92) v3.6.1medwcgB440
ClCG09G005400Silver-seed gourdcarwcgB0108
ClCG09G005400Silver-seed gourdcarwcgB0547
ClCG09G005400Silver-seed gourdcarwcgB0735
ClCG09G005400Silver-seed gourdcarwcgB0791
ClCG09G005400Cucumber (Chinese Long) v3cucwcgB277
ClCG09G005400Cucumber (Chinese Long) v3cucwcgB439
ClCG09G005400Cucumber (Chinese Long) v3cucwcgB548
ClCG09G005400Watermelon (97103) v2wcgwmbB009
ClCG09G005400Watermelon (97103) v2wcgwmbB025
ClCG09G005400Wax gourdwcgwgoB069
ClCG09G005400Wax gourdwcgwgoB011
ClCG09G005400Watermelon (Charleston Gray)wcgwcgB006
ClCG09G005400Watermelon (Charleston Gray)wcgwcgB029
ClCG09G005400Cucumber (Gy14) v1cgywcgB110
ClCG09G005400Cucumber (Gy14) v1cgywcgB379
ClCG09G005400Cucurbita maxima (Rimu)cmawcgB219
ClCG09G005400Cucurbita maxima (Rimu)cmawcgB306
ClCG09G005400Cucurbita maxima (Rimu)cmawcgB377
ClCG09G005400Cucurbita maxima (Rimu)cmawcgB786