ClCG09G004860 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G004860
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionDNA-directed RNA polymerase III subunit RPC8
LocationCG_Chr09 : 4295609 .. 4302204 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCCCTCTCACTTTTCAGCTTCACTGCCGGCTCCCTCTCTTCTCCGCCGCCGCCGTATTTATCCGTTCCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTCGAAGAATCTTCAAAATTCCTGGGTGTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGGTAAGATTCACCACTGTTTTTATACTTGGGCATGAACTCTCTGTTTTTGTTGAATTGATCCGCCTGTTTTTCTGTTTGTACATTACTTGGTTCTCATTTGATTTATTTATGTGTCATTTTGTTTGAAGTTTTAAGTAATTGCTTGCTTTCTCGTCTCTCTTGTTTTTCCCTTCTGCCGTTTGATACATTTAGTTCTTTGAGTTTCTGCAATTGTAATTATTTGGATTTAGTTCTTGTGGGATAATTTTGTTTCTGTTTTATACCTTAGGTGGTGTGGATTGAAGTTTTCCTTTCCCATACCCATTTATGCCTTGCTCCAAATTTGTAGTGCTTTACATTGTTCCCCTTTGATGTTCTGCATTGGTTTCCTTTATTCAGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTTCGTGTAAATTTTGTATATAAACTTGTTGAGTAACCCTCTTCAATTTAGTGCCCTGGGATCAACACTTATAATGAGATGAGCTTTGTCATGAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTATTCTTGCATTGTTGCATTCATCTTTAAAGATTGAACCATTACATTGAAGTCTTTTTTGTTACATGGTGTCCGTGCATTTATGATATAATTCTATTTTTGGTAGGTTCAAAAGGGTCGTGGGTTTAATAAAAAACTTAGAGTGAATAGGTTTAATCTATGGTAACCACTTACCTAGGATATAATTTGCTAGGAGTTTTATTGACTCGTAAATGTTGTTGGGTTAAAGAGGTTGTCCTTGAGATTAGTCGAGATGCGCGTAAGTCGTAAGCTAGTTCTAACACTCACAGATAACAAAATAAATTATAATTTTGGTATCTAACACATAAGGTGTACTTCAATTACCAAGTACAAAAGGAATATCCATTTTTCAAAATCACATAATTTAAACTTTGGCCTCTTCTTTATCCATCAATTTTATGAACTATATTTGTCTTTTCAGTATTTTTGTCAATTGAAAACATAGGATTTTGTCAAAACTACATCAGGGTTACTTATTCATTGGAAATATGAGATCCTGAGTTTTATTTGTGGATGTTTTGGCATGTTTTGGCAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAGTATGTTAATTTCTTTGTTTTTTCAAACTTTCTTTCAGAATGTATATTTCTCCGTCAAGAATTGTTTTCCTTTGATTTGAGTGTCTTAGTCTAACACTTTGAACTAGGTGAGTAAGCGGTTTGGTTAGGCTCGGTTTTAGTAGAAAACCAAAACCAAACCAATTAATTGGTGAAAGAAACAAAGCAATCGAAACTGAATCAGGTTCGTTAAGAATTCGAGCCAACCAAACCGCTTAGACCAGGTGTCTAGTCGGCTCATCCCTTGGTTCACCAAATACACAACATGTTGTGTGCGCACGAGAATGATCGAGGAACGAAAATAAATTGCAACACCTTTTTCCTGAAATAAGAAGGAAATGTTGCACTTCCCCAAATTCGAACATGCATCCTCATTGTATATACTTTATCGAGCGGCTCGTTTTTTCAATAGGTTTTTTTTCTTCTAACTCGAAAGTGACCGAAAATTTTCGGTTTTTAATATTTTCAACTTGAAGCCGCCAAACCAATCGGCTTCATCTCGAATCGACGAGCGATTTCAGTCGGTTCAAGCAATTTTACGATTTCTCCTTGCACCCCTACTTTGAATCTTATCACATTTTTCTTCCTATTAAGTGTATGTTTAAGATTAGTCCTTCTGTATAAGTCTTTCAAGGCATTTGGTTCATTAGTGATTAGCTTAAGAGCTCTAGCATTGATTTCCTAATGAGTTGTTGTTTTGCTGATTGATACAACGGTCTAGATCTATATTCTCAATTCTTGGCAATGGGTTATTATGTCCTTTCCTTTTCAATTAATTTCCTTAGTTGAAATTTCTCTTGTATTATAAGTACCCATTATTGGGTCCTTTTGAAAAATAAGAAAAAATACAATATTTCTCCAAAACTACATGGTATAGAGCAAAACCCTAATGGTTTTGAAACCTTAGCCTCCACTTGCAGTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTGGGTCAGAGCTCTGCGTTAAAGTTTCTTCTCGTTGCCGTCTGGGTCAGAACTTGCTGTTGTGGGTTTATTTTGTTGTTGGCCCAAGCTGCAAATCACAGTGGAAAGAAAAAATTCTTAAGATATAACCTAACCCTAGTCTAGTCGTCGTCGGCCGCCGTCCAGACCACTTGCGCTACGAGATTTGGCTCCGTTCATGGATTTCGTTTTTTATTTTTGCTCGTGGGTTTCAGTTGTAGACCCGTAGACACCTCAGCCTGAAGATTGTGAAGCCACGATCTCTCATGTCGTCTCAGCAATCGTTCATGGAGTCAATTAGGTTCACATTGGTTTAGCTAGATCGGTTCAATTAGGCCACGAGTAGTTCAATCAGACTGGTTCAATCAGACTGGTTCAATCAGACTGGTTCAATCAGATCTGATTTCAAATCTACTCGTGGTGATATTGCGCTGTTCGCGGGCACCTTTTTTTTTTTTTTCAATTTCATTAGTTGAGTCGGTCAATCTCAATTAGTCAGTCTCTCCTATCATGTCAAAGCAGACAGTTACATTATCTACAAGTTTTGCTCATCAGGACATTGACTTTCCTTGCTTCTCTATACAACACAATAAACAAAAATTGTTGATTGTGGATTCATGAGCAATCTCATGACTGGTGACATCAGTATTTTCCATCAGTTTAAATCACACCCTGGTCATTCGTCCATTCAAATAGTAGATGGCTCTCTATCTGAAGTAACAGGAACAGGGTCGATAAAATTACCAAATGATCTCTTACTCTCCAATGTTCTTTATGTTCCTAAATTAAATTGTAACTTGATGTCAATAAGCAAACTTACGAGTGACTTGAATTGTGTATCTAAATTTCATTTGAACTTGTGTGAATTTCAGGAGTTGGGTTTGGGAAAGGTGATTGGCATTGCTAAGTAGCAAGATGGCCTCTATCTTTTTCAAGGAAGACATCTTCCAAGCTCGTCTTTCAACCCCATGTGTGAGTCTTCATCTAACTTCGTTAGTTTCATTCTTGAGTACTCTTTTTGTTAGGTCTTTATCTAGTGAAAATCAAAGTTATGTTATGGCACTTTCACCTCGGACATCCAAATTTTTTGTATCTTGAAAGGTTGTTTCCTCATCTGTTCATTAAGAAAGAACCGAATCACTTTCACTACAAGATTTGTCAACTCTCCAACATACCAGAAATCCTATCCAAGTGTGCCCTACAAATCTTCAAAACTTTTTGCATTGATCCACAATGATATTTGGGGCCTCTGGAATCAAAAATATATCTAGAGCACGTTGTTTCATAACTTTTATTGATGACCATACTAGACTGATATGGACATTCCTCATGAAGGACAAATCTGGAACATCAAGTTTTTTTCAATCTGTTCACTCAATGATCTCCACAAGTCTTCGAAACAGATAATGCTCGAGACTATTTCAATTCAATTCTTGGGTCATTTCTTTCATCTCATGTATAGTTCACACTAGTTCATGTTTGGACACTCAACAAAATGGGATTGCTGCAAGGAAAAATAGTCACCTTCTTGAGGTCACTCGTTCTCTTATGATTGCCAGTAATGTTCCTAATTTGTTTTGGGGAGAAGCCCTTCTTACAGCAACTTCTCTCATAAATCGAATGCCTAGTCGATCCTCAAATTCCAATATCCTCGAGATGTCTTCCTCCAAATTCATTCCCAACTACAAAACTTTTCTTCAAATTTACCCTTTCTAATTAATTTCCTTAGTTGGAATTTCTCTTGTATCATAATTACCCATTATTGGGCCTTTTGAAAAATAAGAAAAAATACAATATTTCTCCAAAACTACAGTAATGTTAATGTTACTGCCTCCGAATGCTGGTGGTTAATTGCATAAAGGGGAATTCATACTTATACCATTCTTATAAGAACTTATATATTTATACATATATACACAAGTACTTTGTTAGGTTTTTATGTTGATCCATAACATGCTTGAAAATTTGGTTTGGGTTTATGTCAGCTTGGATATTTAGATTTGGGTCAATTCTTTTGAAGTCTTTAGGAGTAACCTTAATCTTTTCATTTCTTGCTTTATAAACACAACATATGACAAATTTAGCATGGTGGTGATGGATGTTTGCTGATTTTGCAGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGGTAATGCCATCTCTGCAGCTCACAACCACCAACTAAAATTATAAATGGTGTTTTTGTTGAATGATAATTTTTATTGTTGATTTATCTAAAGTATTATCTGTGACTATTCTTTTTGCGAGGATTGCAGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGGTTTGTCAATTATGATAGGCTTAAATCCAGTGTTAGTCCTTAAATTTTATACTTATTTCATTTGGATCCTTCAACTTTGAAATGTTCTGTTTTTGAACTTTGCAAAAGACCTACTCAATTTCTCTCTTTTTGAGAGCTTGGTAGTTTTAAGAATCTAAATACAATAAGCACAAATATGAAGGGAAATAGTATGTGATGTATATTGTTGTGTAGTGATAATGTTGCGATCTATGAAGCACAAACACTCCATTTTAGGGGAAGTGTATATCTGACATACTCTAGACATGTGTTTGCAAATTTTTGTGGGGACACAGCTGGGATACTTATTGGACACTGTTGAGAAAATGTTTTAGAGCGAAAATGCTTGAGTCTTTTATGTTGGACCCAAATTTAAAGCTAAAGCAATTATATGTTAACAAAATAAAAGGAAAGCCCGTTTTCTTAACCAAAGATAAAAAAAAAGGTAAGTACGAAAGAGTGTATTCCCAATGTGTCCGTGTCCTAATCTTTTTGAAATTGGAAAATCGTCGTGTTGTGTTGTATCTGAGTTTGTATCTGTGCTTCTTAGGCTGCTTTAAAGTTTGAATTTTGGAGAGAGTGCATATGCTTAGTTTTGGTTTTTGGAAATGGCAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGTATGTCACTCACTCTCAACTTCTACCATTTCCTTTACTTTGTATTATTGATAAATGTGTTTGTGTTTGTAGCATTAGTCAGAGGAAGACTCACTGTCAATGGCATATTATGACCATTCCCATTAAACAGCAACTATTTTGTGAATAAGGTCTATTGTTTTTTGGGTGTAGGCAACAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCTATTTAATGGGTATTCATTCATTCATAACTCTGTATTATACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTGGTCCGCTTTTCACTTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAACGGCTTCTTCTGTCTTTGTACTTTCAAAC

mRNA sequence

TTTATCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCCCTCTCACTTTTCAGCTTCACTGCCGGCTCCCTCTCTTCTCCGCCGCCGCCGTATTTATCCGTTCCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTCTTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCAAAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGCGACTGAATTCGAAGAATCTTCAAAATTCCTGGGTGTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCCTATAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCTATTTAATGGGTATTCATTCATTCATAACTCTGTATTATACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTGGTCCGCTTTTCACTTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAACGGCTTCTTCTGTCTTTGTACTTTCAAAC

Coding sequence (CDS)

ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAA

Protein sequence

MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS
Homology
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BLAST of ClCG09G004860 vs. Swiss-Prot
Match: RPC8_HUMAN (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-31
Identity = 77/212 (36.32%), Postives = 112/212 (52.83%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+  KV F  +VF P++ E++IGK+K     G+ +SLGFF+DI +P   L   ++F
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPME 180
                +  +  WVW+YE      D+Y    +EIRFR+    +       P   D+    E
Sbjct: 121 -----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSE 180

Query: 181 EKPKENINVKAFAPMIVTATIDHDGLGPLSWW 209
           E PK+       AP  +  +I   GLG LSWW
Sbjct: 181 ELPKKE------APYTLVGSISEPGLGLLSWW 201

[Close]
BLAST of ClCG09G004860 vs. Swiss-Prot
Match: RPC8_MOUSE (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-30
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+  KV F  +VF P++ E++IGK+K     G+ +SLGFF+DI +P   L   ++F
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDPNNGGKLRWVWDYEGV--PCDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPME 180
                +  +  WVW+YE      D+Y    +EIRFR+    +       P   ++    E
Sbjct: 121 -----DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 181 EKPKENINVKAFAPMIVTATIDHDGLGPLSWW 209
           E PK+       AP  +  +I   GLG LSWW
Sbjct: 181 ELPKKE------APYTLVGSISEPGLGLLSWW 201

[Close]
BLAST of ClCG09G004860 vs. Swiss-Prot
Match: RPC8_BOVIN (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-30
Identity = 75/215 (34.88%), Postives = 114/215 (53.02%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++F
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+  KV F  +VF P++ E++IGK+K     G+ +SLGFF+DI +P   L   ++F
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 TPDPNNGGKLRWVWDYEGV--PCDIYET--DEIRFRIHSIEYPAIPVEQPKERDSKFPME 180
                +  +  WVW+YE      D+Y    +E+RFR+    +       P   ++    E
Sbjct: 121 -----DEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSE 180

Query: 181 EKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGS 212
           E PK+       AP  +  +I   GLG LSWW  S
Sbjct: 181 ELPKKE------APYTLMGSISEPGLGLLSWWTSS 204

[Close]
BLAST of ClCG09G004860 vs. Swiss-Prot
Match: RPC8_SCHPO (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.0e-28
Identity = 73/214 (34.11%), Postives = 112/214 (52.34%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
             DG++   VVF LI+FRP+ GEV++GK+K   E G+R+++ FF+DI +P  +L     F
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120

Query: 121 TPDPNNGGKLRWVWDYEGVP----CDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFP 180
            PD     +  WVW  EG       ++Y    +EIRF+I S ++  I  ++ K   +   
Sbjct: 121 RPD-----ERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITG 180

Query: 181 MEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW 209
            E        +++ +P  + A+   DGLG  +WW
Sbjct: 181 TEA-------LESVSPYTLIASCSRDGLGIPAWW 202

[Close]
BLAST of ClCG09G004860 vs. Swiss-Prot
Match: RPC8_YEAST (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 68/220 (30.91%), Postives = 120/220 (54.55%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRIS-LGFFEDIHVPVHLLPSKSE 120
           P DG++   V F  +VF+P++GE++ G + +    G+++S LG F+DI +P ++L     
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120

Query: 121 FTPDPNNGGKLRWVWDYEGVPCDIYETDE-IRFRIHSIEYPAIPVEQPKER--DSKFPME 180
           +TP+ +      W+W  +      ++ +E IRFRI    +  +  + PKER  + +  +E
Sbjct: 121 YTPEES-----AWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLE 180

Query: 181 -------EKPKENINVKAFAPMIVTATIDHDGLGPLSWWD 210
                  E+  +N    A+A   +  +   DG+G +SWW+
Sbjct: 181 NEIEGKNEETPQNEKPPAYA---LLGSCQTDGMGLVSWWE 212

[Close]
BLAST of ClCG09G004860 vs. TrEMBL
Match: A0A0A0K846_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G413390 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 8.5e-105
Identity = 187/226 (82.74%), Postives = 208/226 (92.04%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLRISLGFFEDI+VPV L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 180
           TPD NNGG+ RWVW Y  VP DIYE+DEI+F++HSIEYPAI VEQPKE +SKFPMEEKPK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS 225
           E+INVK FAPM++TA++D DGLGP+SWWDGSG  + E+E E EEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 226

[Close]
BLAST of ClCG09G004860 vs. TrEMBL
Match: W9QXR4_9ROSA (DNA-directed RNA polymerase III subunit rpc8 OS=Morus notabilis GN=L484_012570 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.0e-69
Identity = 129/216 (59.72%), Postives = 159/216 (73.61%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPP +L  P+ +AIK ELEKLFLDKV+ANLGLCISVYDI S++GGFIF
Sbjct: 1   MFYLSRIEHTLRVPPDILSRPLTEAIKVELEKLFLDKVIANLGLCISVYDIISIEGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGAATY  VFT+I+FRP+VGE+I  KVKESD NGLR++LGFFEDI++P + LP  S  
Sbjct: 61  PGDGAATYTAVFTMIMFRPFVGEIISAKVKESDANGLRLTLGFFEDIYIPANFLPDPSRP 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 180
            PDP    ++ W+W++      I   DEIRF++HS+ YP IPVEQPKE            
Sbjct: 121 EPDPRKRDRVTWIWEFGEQKYVIDGEDEIRFQVHSVNYPPIPVEQPKES----------- 180

Query: 181 ENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEE 217
                K FAPM++T ++D DGLGP+SWWDG+ + EE
Sbjct: 181 -----KPFAPMVITGSLDCDGLGPVSWWDGADESEE 200

[Close]
BLAST of ClCG09G004860 vs. TrEMBL
Match: A0A061DR43_THECC (RNA polymerase Rpb7 N-terminal domain-containing protein OS=Theobroma cacao GN=TCM_046979 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.8e-69
Identity = 132/226 (58.41%), Postives = 167/226 (73.89%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS IEHTLR+PP LL+LP+ +AIK ELE LFLDKV+ANLGLCISVYDIRS+ GGFI+
Sbjct: 1   MFYLSLIEHTLRLPPHLLNLPLDEAIKIELEALFLDKVIANLGLCISVYDIRSIKGGFIY 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+TY V F LIVFRP+VGE+I+ K+KESD NGLR+SLGFF+DI++PVHLLP  S F
Sbjct: 61  PGDGASTYTVEFRLIVFRPFVGEIIVAKLKESDANGLRLSLGFFDDIYIPVHLLPIPSRF 120

Query: 121 TPDPNNGGKLRWVWDY--------EGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSK 180
             DPNN  + RW+WD+        E     I   D+I+FR+HS+ YP+IP+EQP+     
Sbjct: 121 ESDPNNRNQGRWIWDFGEAEEAQSEEPRFVIDGMDQIKFRVHSVIYPSIPLEQPE----- 180

Query: 181 FPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEA 219
                      N K FAPM++T +ID+DGLGP+SWW+ +  V+EE+
Sbjct: 181 -----------NSKPFAPMVITGSIDYDGLGPVSWWEEAEMVQEES 210

[Close]
BLAST of ClCG09G004860 vs. TrEMBL
Match: D7TPA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00580 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 123/208 (59.13%), Postives = 156/208 (75.00%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MF+LS IEHTLR+PP LL LP+ +AIKGELE LFLDKV+ANLGLCISVYDIRS+DGGF+F
Sbjct: 1   MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+TY V F L++FRP+VGE+I  K+KESD NGL++SLGFF+DI++PVHL+P+    
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 180
            PDP N  ++ W+WDY+     I   DEIRF++ S+ YP IPVEQPKE            
Sbjct: 121 EPDPENKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKES----------- 180

Query: 181 ENINVKAFAPMIVTATIDHDGLGPLSWW 209
                K FAPM++  ++D+DGLGP+SWW
Sbjct: 181 -----KPFAPMMIMGSLDYDGLGPVSWW 192

[Close]
BLAST of ClCG09G004860 vs. TrEMBL
Match: A0A0D2QVF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G243200 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.3e-65
Identity = 125/225 (55.56%), Postives = 163/225 (72.44%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS IEHTLR+PP +LHLP+ +AIK ELE LFLDKV+A LGLCISVYDIRS+ GGFIF
Sbjct: 1   MFYLSLIEHTLRLPPHILHLPVDEAIKSELETLFLDKVIAKLGLCISVYDIRSIKGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+TY V F LIVFRP++GE+I+ K+KESD +GLR+SLGFF+DI++PVHLLP+ S F
Sbjct: 61  PGDGASTYTVEFRLIVFRPFIGEIIVAKLKESDASGLRLSLGFFDDIYIPVHLLPTPSRF 120

Query: 121 TPDPNNGGKLRWVWDY--------EGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSK 180
              PN   + RW+WD+        E     I  +D I+FR+ S+ YP+IP+EQP+     
Sbjct: 121 EAIPNTRNQGRWIWDFGDAEEAQSEEPRFVIDGSDPIKFRVDSVIYPSIPLEQPE----- 180

Query: 181 FPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE 218
                      N K FAPM++T TI++DGLGP+SWW+ +  ++E+
Sbjct: 181 -----------NSKPFAPMVITGTINYDGLGPVSWWEEAEMIQED 209

[Close]
BLAST of ClCG09G004860 vs. TAIR10
Match: AT1G06790.1 (AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-64
Identity = 117/220 (53.18%), Postives = 154/220 (70.00%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGAATYKV   ++VFRP+VGEVI  K KESD NGLR++LGFF+DI+VP  L+P  +  
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEE 180
            PDP N  ++ WVW+Y G P + Y  D   +I+FR+ SI YP++P E+ ++         
Sbjct: 121 EPDPYNRKQMIWVWEY-GEPKEDYIVDDACQIKFRVESISYPSVPTERAED--------- 180

Query: 181 KPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE 218
                   K FAPM+VT  +D DGLGP+SWWD    V++E
Sbjct: 181 -------AKPFAPMVVTGNMDDDGLGPVSWWDSYEQVDQE 203

[Close]
BLAST of ClCG09G004860 vs. NCBI nr
Match: gi|659122950|ref|XP_008461408.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo])

HSP 1 Score: 391.7 bits (1005), Expect = 8.4e-106
Identity = 188/224 (83.93%), Postives = 207/224 (92.41%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLRISLGFFEDI+VPV L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 180
           TPD NNGG+ RWVW Y  VP DIYE+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPK
Sbjct: 121 TPDENNGGRRRWVWIYNEVPFDIYESDEIKFKIHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS 225
           E+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E EEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEVEEDS 224

[Close]
BLAST of ClCG09G004860 vs. NCBI nr
Match: gi|449436395|ref|XP_004135978.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 1.2e-104
Identity = 187/226 (82.74%), Postives = 208/226 (92.04%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           PSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLRISLGFFEDI+VPV L+PS SEF
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEVIIGKVQESNENGLRISLGFFEDIYVPVELMPSGSEF 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 180
           TPD NNGG+ RWVW Y  VP DIYE+DEI+F++HSIEYPAI VEQPKE +SKFPMEEKPK
Sbjct: 121 TPDENNGGRCRWVWIYNEVPFDIYESDEIKFKVHSIEYPAILVEQPKESNSKFPMEEKPK 180

Query: 181 ENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS 225
           E+INVK FAPM++TA++D DGLGP+SWWDGSG  + E+E E EEDS
Sbjct: 181 ESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEDEVEEDS 226

[Close]
BLAST of ClCG09G004860 vs. NCBI nr
Match: gi|703064164|ref|XP_010087136.1| (DNA-directed RNA polymerase III subunit rpc8 [Morus notabilis])

HSP 1 Score: 270.4 bits (690), Expect = 2.8e-69
Identity = 129/216 (59.72%), Postives = 159/216 (73.61%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPP +L  P+ +AIK ELEKLFLDKV+ANLGLCISVYDI S++GGFIF
Sbjct: 1   MFYLSRIEHTLRVPPDILSRPLTEAIKVELEKLFLDKVIANLGLCISVYDIISIEGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGAATY  VFT+I+FRP+VGE+I  KVKESD NGLR++LGFFEDI++P + LP  S  
Sbjct: 61  PGDGAATYTAVFTMIMFRPFVGEIISAKVKESDANGLRLTLGFFEDIYIPANFLPDPSRP 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPK 180
            PDP    ++ W+W++      I   DEIRF++HS+ YP IPVEQPKE            
Sbjct: 121 EPDPRKRDRVTWIWEFGEQKYVIDGEDEIRFQVHSVNYPPIPVEQPKES----------- 180

Query: 181 ENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEE 217
                K FAPM++T ++D DGLGP+SWWDG+ + EE
Sbjct: 181 -----KPFAPMVITGSLDCDGLGPVSWWDGADESEE 200

[Close]
BLAST of ClCG09G004860 vs. NCBI nr
Match: gi|590716437|ref|XP_007050414.1| (RNA polymerase Rpb7 N-terminal domain-containing protein [Theobroma cacao])

HSP 1 Score: 268.1 bits (684), Expect = 1.4e-68
Identity = 132/226 (58.41%), Postives = 167/226 (73.89%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLS IEHTLR+PP LL+LP+ +AIK ELE LFLDKV+ANLGLCISVYDIRS+ GGFI+
Sbjct: 1   MFYLSLIEHTLRLPPHLLNLPLDEAIKIELEALFLDKVIANLGLCISVYDIRSIKGGFIY 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           P DGA+TY V F LIVFRP+VGE+I+ K+KESD NGLR+SLGFF+DI++PVHLLP  S F
Sbjct: 61  PGDGASTYTVEFRLIVFRPFVGEIIVAKLKESDANGLRLSLGFFDDIYIPVHLLPIPSRF 120

Query: 121 TPDPNNGGKLRWVWDY--------EGVPCDIYETDEIRFRIHSIEYPAIPVEQPKERDSK 180
             DPNN  + RW+WD+        E     I   D+I+FR+HS+ YP+IP+EQP+     
Sbjct: 121 ESDPNNRNQGRWIWDFGEAEEAQSEEPRFVIDGMDQIKFRVHSVIYPSIPLEQPE----- 180

Query: 181 FPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEA 219
                      N K FAPM++T +ID+DGLGP+SWW+ +  V+EE+
Sbjct: 181 -----------NSKPFAPMVITGSIDYDGLGPVSWWEEAEMVQEES 210

[Close]
BLAST of ClCG09G004860 vs. NCBI nr
Match: gi|659122952|ref|XP_008461409.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 2.4e-68
Identity = 142/231 (61.47%), Postives = 166/231 (71.86%), Query Frame = 1 

Query: 1   MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIF 60
           MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIF
Sbjct: 1   MFYLSRIEHTLRVPPSLLNLPILDAIKGELEKLFIDKVVANLGLCISVYDIRSVDGGFIF 60

Query: 61  PSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRISLGFFEDIHVPVHLLPSKSEF 120
           PSDGAATYKVVFTLIVFRP+ GE  +   +          +  F     P+ L   + + 
Sbjct: 61  PSDGAATYKVVFTLIVFRPFTGEYHLDFSR----------IFMFRSSLCPLDLNSHQMKI 120

Query: 121 TPDPNNGGKLRWVWDYEGVPCDIYE-------TDEIRFRIHSIEYPAIPVEQPKERDSKF 180
             +  +G     +  Y     ++            I+F+IHSIEYPAI VEQPKE +SKF
Sbjct: 121 MVEDADG--CGSIMKYRSTYMNLMRFVNYDRLKSSIKFKIHSIEYPAILVEQPKESNSKF 180

Query: 181 PMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS 225
           PMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E EEDS
Sbjct: 181 PMEEKPKESINVKPFAPMVITASLDQDGLGPVSWWDGSGEAEAEDEVEEDS 219

The following BLAST results are available for this feature:
BLAST of ClCG09G004860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC8_HUMAN5.2e-3136.32DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1[more]
RPC8_MOUSE1.5e-3035.85DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2[more]
RPC8_BOVIN2.6e-3034.88DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1[more]
RPC8_SCHPO7.0e-2834.11DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strai... [more]
RPC8_YEAST1.2e-2730.91DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain... [more]
BLAST of ClCG09G004860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K846_CUCSA8.5e-10582.74Uncharacterized protein OS=Cucumis sativus GN=Csa_7G413390 PE=4 SV=1[more]
W9QXR4_9ROSA2.0e-6959.72DNA-directed RNA polymerase III subunit rpc8 OS=Morus notabilis GN=L484_012570 P... [more]
A0A061DR43_THECC9.8e-6958.41RNA polymerase Rpb7 N-terminal domain-containing protein OS=Theobroma cacao GN=T... [more]
D7TPA5_VITVI1.4e-6759.13Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00580 PE=4 SV=... [more]
A0A0D2QVF2_GOSRA1.3e-6555.56Uncharacterized protein OS=Gossypium raimondii GN=B456_001G243200 PE=4 SV=1[more]
BLAST of ClCG09G004860 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06790.11.3e-6453.18 RNA polymerase Rpb7 N-terminal domain-containing protein[more]
BLAST of ClCG09G004860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122950|ref|XP_008461408.1|8.4e-10683.93PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis melo... [more]
gi|449436395|ref|XP_004135978.1|1.2e-10482.74PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cucumis sati... [more]
gi|703064164|ref|XP_010087136.1|2.8e-6959.72DNA-directed RNA polymerase III subunit rpc8 [Morus notabilis][more]
gi|590716437|ref|XP_007050414.1|1.4e-6858.41RNA polymerase Rpb7 N-terminal domain-containing protein [Theobroma cacao][more]
gi|659122952|ref|XP_008461409.1|2.4e-6861.47PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Cucumis melo... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005576RNA_pol_Rpb7_N
IPR012340NA-bd_OB-fold
IPR013238RNA_pol_III_Rbc25
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0001056 RNA polymerase III activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G004860.1ClCG09G004860.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005576RNA polymerase Rpb7, N-terminalGENE3DG3DSA:3.30.1490.120coord: 1..80
score: 5.8
IPR005576RNA polymerase Rpb7, N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 8..77
score: 3.1
IPR005576RNA polymerase Rpb7, N-terminalunknownSSF88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..78
score: 7.06
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 79..158
score: 2.57E-10coord: 187..203
score: 2.57
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 79..208
score: 8.5
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 2..210
score: 1.0
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 2..210
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G004860Csa7G413390Cucumber (Chinese Long) v2cuwcgB526
ClCG09G004860MELO3C023634Melon (DHL92) v3.5.1mewcgB178
ClCG09G004860Cla015164Watermelon (97103) v1wcgwmB007
ClCG09G004860Cla97C09G167280Watermelon (97103) v2wcgwmbB035
ClCG09G004860Bhi09G000650Wax gourdwcgwgoB065
ClCG09G004860CSPI07G18380Wild cucumber (PI 183967)cpiwcgB555
ClCG09G004860Cucsa.204830Cucumber (Gy14) v1cgywcgB379
ClCG09G004860CmaCh17G010150Cucurbita maxima (Rimu)cmawcgB306
ClCG09G004860CmoCh17G009930Cucurbita moschata (Rifu)cmowcgB299
ClCG09G004860Lsi02G024980Bottle gourd (USVL1VR-Ls)lsiwcgB159
ClCG09G004860CsGy7G016800Cucumber (Gy14) v2cgybwcgB486
ClCG09G004860MELO3C023634.2Melon (DHL92) v3.6.1medwcgB173
ClCG09G004860Carg13399Silver-seed gourdcarwcgB0442
ClCG09G004860Carg07103Silver-seed gourdcarwcgB0108
ClCG09G004860CsaV3_7G030220Cucumber (Chinese Long) v3cucwcgB548
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G004860Watermelon (Charleston Gray)wcgwcgB006
ClCG09G004860Watermelon (Charleston Gray)wcgwcgB029
ClCG09G004860Cucurbita maxima (Rimu)cmawcgB219
ClCG09G004860Cucurbita maxima (Rimu)cmawcgB377
ClCG09G004860Cucurbita maxima (Rimu)cmawcgB786
ClCG09G004860Cucurbita moschata (Rifu)cmowcgB204
ClCG09G004860Cucurbita moschata (Rifu)cmowcgB306
ClCG09G004860Cucurbita moschata (Rifu)cmowcgB375
ClCG09G004860Cucurbita moschata (Rifu)cmowcgB785
ClCG09G004860Watermelon (97103) v1wcgwmB016
ClCG09G004860Cucurbita pepo (Zucchini)cpewcgB126
ClCG09G004860Cucurbita pepo (Zucchini)cpewcgB280
ClCG09G004860Cucurbita pepo (Zucchini)cpewcgB543
ClCG09G004860Bottle gourd (USVL1VR-Ls)lsiwcgB217
ClCG09G004860Melon (DHL92) v3.6.1medwcgB304
ClCG09G004860Silver-seed gourdcarwcgB0735
ClCG09G004860Silver-seed gourdcarwcgB0791
ClCG09G004860Watermelon (97103) v2wcgwmbB009
ClCG09G004860Watermelon (97103) v2wcgwmbB025
ClCG09G004860Wax gourdwcgwgoB011