ClCG09G003540 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G003540
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribulose bisphosphate carboxylase/oxygenase activase
Location	CG_Chr09 : 3090942 .. 3097520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTCTATATCCGGCCTCTCCCTTCCCTCAGTCTTCCAGTACAAAAGTTCAATACTAGCGCGAAAACCTCGATTCCGTTCCTTCTCCATTCGATCTTCCAAGGATGTCTCCGGTGAAGTCGGCAGCGGCGTCGACGGCGGCGAGCCGTCGCATAGGCCGAAGAGGCTGTCGGAGCAGTCCACTTGGGAAGCCAAGGACTCCGAGGGCAGGGACTATCTCTATAGGCTTGGCAACGAGGCGGATAACATGAACATCGCCGTCGGAGCTAGAGCTGGCGTCATCGATGATCTCTTCGCCGGAAACTTCCTTGGCAAAGACTGTAAGTACCCGATTTGTCACTGTTCTTTCTTTTTTCATTTCTTAGGTTATGCTTACAGGTTTGTTGATGTTTTGCTGAGTTTTATTTTGTTCTGTAGCGGACATTGTGTTTGATTATCGCCAGAAGGTCACAAGATCATTCGAGCATCTTCAAGGAGACTATTACATTGCTCCTATTTTCATGGTAATTTTATCCGTTCTACTTCGTTCCGTCTTATTTTGTTTTTTAGCTGTTGATTGTTTTTTTCTTCATTACTGTTCACTTTCATCGATATTTTCTAAAACTGCAATTTCGTGCTCTTGATTTTGAAATATTTAATTCCTGTACTTGGGATCAAGATGAGCCTCATTAATGGTACAACGTGAGTAGCAATGTGGGCGTTTCCACCTTGGTGAAATCGCTGCAATTTTTAAATCGTCAAGTAAAGTATTACATTGTTGCTGTTTTCATGATAATTAAATCTGTTCTACTTCTACTTCGTTACGCTGAGTTTGTTGTTTAGTCAGCAATGCTTCTTCTCTGTTCTCCGTTAATGTTCAGTTGAATCGATATTTTCTGCTAGTGTAACGTAGACCGATCTCTTTCTCCTTGATTTTGCAATACTTAATTCCCGTACTTGCAATCACAATGGGCCCAAGATGATTTTAACAGTACAATGCAATTAGAGGTGTGGCTGTTTCCACCTAGGGTTTATGTTCGGGATGCCATATATCTGTAGCATTCAACATTTTACAATTTTCCTTTTTATTTATCTTTATGCTGTTTGTGTTATTATTTGAGAATGATCATTTCTCAATGACTGTCTTTTTACACTTGTTTCCTTTGTTTTTTTTTTTTCTTTTCTTTTGACAGGATAAAGTTGGTAAGTTCCTTGAAACTTGGTGTTGATAAACGGCACGTGATGAATTACGTTTGAAGAAGTAATTGAATTGCTACAATGTGTAAGAACATATTTAAGCCAAACATATTATTTAGATAAAACCAACCGAACTGGCATTTTCATTTTCAAACGACTTATGCATTTACTGTTTGTTCCGTGCGCATCTTTTTGTGTAGTCCATATCATTGTTAAAACTCATGGTTGTGTTCAATGTGTTTATGTAGCCTTCCTTGATAGTGTGTTCACCAAGGCCTGCAGTCCTTAACACTATATACACCAATACTATTAGTCTTTGATGTTGTATAATCTGTATGACCTGAAGAATAACAGTTTTACCAATGATGAGTTGATGAAACCAAAATTTAATTTTTGTGCACGTGTTTTCTCAAAATGAGGAGTTCCTTCTAAGCACTTATGATCAACTACAACTCCTATGAAAATTTAATTGGCTTTGGTCAACAAAAATCCTCATTGTTGGATTAGTCGTTTTTTCGTATTATTTGCTACAAATTTGTGTCATTGACGTTCTTCTCTTTGGGAAGAGAAATGCAGCATAAAGATATGATGGTAGTGCGTTTCTCTCTAGGAATTTAAAACGAAAGAGTTTTCCAGGAACACTACCTTCTTTCATGAAATGAGTTCGTACAGGTAGCAGGCTTGAACTTAGCACACGTTAACAAGGTCTCTGTTATTGATGCAGTATGCCACATTGTGAAGAACTTCATGGTTCACCTTCTCAATGTCAAAGTTCCACTCATCTTAGGTATGCATTCGTTTAATTTACTGGTTTCTATAGAAATCTTTGATAGTCAAGTTTACAGAACATGATAATAAAAACATAACCTTGAAAAGTTCCATCAATTTTGCGTCAATGGGAGTCTGCTCCATTGCATTGAATCTTCATCAGTTTGATAAGAATGACATCATTATAGTATAAGGGTATATTAGTAAGCTAGGGAGTTTGTTATACTTGTTGGTTACAAATAGATGCGGAGGGGAATGGAGAAGATATGCAACATTTTAATTAGGGCTTGAGAGTGACCTCAAGATTGGGAGGGTCCGAGTACTTCGAATAACTTGGTTTATCTTGTAGCTCGCTTACCATTTATATCTCAGTATATTTGGGTTCTATCATTTTCTTGTATTGGAATGAAATCAGTGTCTTATCAATATTGACATGTGCAACTTCATGATACTGCTAAAAACTTCTTTTAAAATGTTTATGTTTATCTGTTAGGCTGGATGAAATCACTTCCACATTGTTCCATAAAAAGAGTGCGCAGTTGGAAATTTAAGCATTTTGTATTACAGGTGTTTGGGGAGGAAAGGGTCAAGGAAAGACATTTCAGACGGAACTTATATTCCAGGCCATGGGAGTGGAACCCGTGATAATGTCTGCTGGAGAGTTAGAATCAGAAAGAGCTGGTAAGATAGGGACCTCGATAACTTATTTTAATTTCTGAGTGTTAACTTGATGTTGAATTAATGATTCAAGTTGAATAGATTTCTCTTGAATCTACTCTCAACAATCTTAGGAATGAGAAATTAGAAAGGTGAAAGCAATTCATATTCTTTTATTAGCTTAATATAATCAAGATATTATTTTGTAAATTAGCTGACAAAAATGTAGCTTTTGGCCGACAAATATTTTCTCAATTGTTGTAGTCTTTCTTTGACTAAAACATGCATGAATAGGTCAAACTCACACAGGTTTTTCATTGCAAGTTTGCTTGCTATTTTCTTTTGCGAGAAATTTGGTTCAATGTATGGACATGTCCATAGCTTTTGTACTCTGACGTTGGGGTGGAAATTGGAAGACCAAGTAAAATAGTGACTTTCATCAACAGGTGAGCCAGGAAAACTGATACGTGAACGCTATAGAACTGCCTCTCAAGTGGTCCAGAATCAAGTTAGAAGCTTTACCACTTACATTCTACATATATGTATGTCTTGGGTTAAATGTTGCCTCGTGCAGTTTGAATTGCACAACGTTCCATGTTTATCCATAAAGCACCCCTTCTCTTCTTTTTTAGTTTTAATTTTCATTCACTCTAAAGTGCCGAAGTGTATGTTACCCTTAGGGGTCTGTTTTTTTATATATATATTTAATGACGTGACTGTAATTTCCCTGTGGAAAGCATTGGTTTGTATCAACAACATTAGTGTAGGAAGGTCTAGAAAGTAGCTTTGGATGAGCCTGCTATTATTTAATGTCCTCAGTAACTGGAAAGCTTGCAAAAAGGAAATGTATTTAAGAAAGACCCCATTTACAATATGGCTTATAATATAACATTGTTAACTTTGATTACGACCATTTTCAATTTTAGACTTCTCTTATTTTTTGATTGATTTTCATGCTGCAGTTTGTTCTGTTTTGGCAGCTTTGAATTTTATTGGACTTTCTCATAGGCCATACAGCTCGTTCCATTTCATATTTCTGACATTAGTTATCATATTCAAACTTACAAATTTGAAATTTTAATTCAGATCTGTATTTGATGTGTCAAAAGTCACTCGTCACTTCACTCTATCATTTTGGTCTTATACTTACATATTTGAAAGATAATTTCAATTCTTTTAAACATTAAGGTGCAATGAATTGGTGTTCTTTACGTTGTGTTTCTTACTTTTCTTGTTCACATAATGTATGGTTTCTGTGGTTCATTTTTTTAATGTAATACGACACAAGGTGCAACTGCAAAGTGCAAAATGATTCATAATTAGTTGAAGAGTATATAAAAGATGCTTAATAAATAAAAATCATAATAAGATGCATACGCATCGCACCATAGGCCATGAAGTGTATGTATTTACCACTTAGGAGCACACTGAACAGCTCTGTGTTCAGTTGGTCATGTTTCCAATCAGGGCTGTCCAAACCTTTTGTATGGGTATTTATTAATTTTTTTTTGTTCATAAATTATTTTTAATTATTTCAATGCATTCAGAAATAATCCATGCATGACGTGACTTTTCTTGACCGTTACAGGGGAAATTGAGTTGTTTGATGATCAATGATATTGATGCTGGCATTGGTAGATTTGGTAAGGTTCTATTTTCGTAGACATTGAATTATAAAGAATGAGATTAAAAATGATGTGAATCCATCATCTGTTACCTCCTTTAAAGATAATACAAATTGACGGAGTAGAATTTTATTGGATTATATATCAAAATACTTATTCAATCATATATAACAAATATACTTTTATTTTGTTCTTATATAGGGAGTACACAGGTGACAGTCAACAATCAAATTGTCTCTGGTACTCTGATGAATCTAGCTGACAATCCTACCAGAGTTAGCATTGGACAAGATTGGCGACAAGCAGATATTTTGAACAGAATTCCAATCATCCTTACAGGAAATGATTTTTCAACTATTTATGCTCCCTTAATTCGTGATGGCAGGATGGAGAAATTCTACTGGTATGAAATTAATTGTTGGAGGATCATTATCATGTTGACTCCCTAAAGATGTTTTAATAAATTGTACTAGTTTCTCCAGATTTAGATATGGGATCAGAATTGGATACAAATATATAAGCTACACTCTATACTTAATACTTGTTATACTCTCCCTCTTGTTTTATTTTGTTTTTGAAGTCAGCATTAAACACTCTCTTCTGAAACATTATCTGGCAACAGGCAGCCTAACCGTGAAGACATCGTGAATATTGTCCATAGAATGTATGAGAAAGATGGGATATCAAGGGCTCAGGTTGTTGACATCGTCAACAAATTTCCTAACCAAGGTAAGCAACTTTTTTTATGTAGTTTTTGAAGTTACAAATTTTAGTTGACAGAATCATTGAGTTTTTGGAAAGCAACTCTTTGATGGTTAGTGAAGGATCAATTATAAATATGGTTCATCTTGCTCTCTTTTTCCTTTTGTGTATTTTCTGGAGTTTTTGGACAATGAACATGAAAATTCTTAATAGACATTCATCTAGTCGTATCTTGTGAATACAATATTTATATGTAGTATTTGTGTTTCATCACAAATGTAAATATCCAACAAATGTATGTTTAATGCATACAGATGACACTTTCCTGTCTGACACTTTAATATCCATCACATACACAGTCCATAAAACATTTCAAAGCAAAGTTGTGAATGCATCATCATTATCTTACATTTTTTAAATTGCTTCTTTTTTTTTTCTTTTTCTCAGCTTTGGATTTTTATGGAGCTCTAAGATCACGGACATACGATGCAGCCATATCCAAGGTATATATCATTTTCATTGGCATATGCAAGGCCTAATAATATTAATGTTTCTTCCAAATCATTTATGAAATGAAGATGTCAGGAACTATTCCATCCATTAGAAAAGTAGAATAATTTAATATCTTTATGTCAAACTCCCTTTTTGTTTCAGTGGGTTGATGAAATTGGAGGAGTGGAAAAGCTAGGAGAAAAGCTGCTTAAGAGAAGGAAGAATGAAAAGCTTCCTACATTCACACCACCAGAGGTGGTTAATCTATAACATTTTCAAATTCATGCTTGTTTGGTTCTGTTCTGCTTGTCCTATAACTGCTAGATGTGTTGATCAACAATTAGTTAGTCGACTGATTTATCAACAAATACGTGGGTACTATTAATATTCTTTCCTTTATGAATATAAAATGTTGATGAATTCACAATGAAAGTATATAGATAGAATAAATAGCATGTTAATTTACAAAATGTTCCTTTATCACTCAGTATTATAAAATAGATAAAACTTAGTATCCCATGAAAGTGGAGGTGTAAAGCTCTCTAAACAAATCTAGCATGATAATTCACAGCTGTTTTGTATCTTTGGTTGACCTTCTTGATCGTTACTCATCTTCAACTTACGGTAAGATATCATTACTATAATAAACTTGTTGTCTTCTTATTCATTCCGAATATGTATGGCATTACTCCGACTTTTTATCCCTGAATCTTTGGTAATGACTAGTTCCATTCCTCATACATATATTCGCCTATGGAAAATTTAGGAAGTATATATGTATATTCATCTTCTGAAATTTGTTCCACGATGTGGATAAAATGAGTTTTTTTCCCTCTACTAGAGCAACCACATATAGTCAGGCAGTATACTTTCTGGATTTACGACAAGTTAAAAAGGAACCGAACTCACTACTTTAGTTGAAAGTTGTATTCTGTCTTTTATGCTCTTTTCTTTATTATTTCTTAAGAGTCAAGTGAAGAGTGTCATTCACTACTTTCATGTCTATATGTGTAGACATGGAGTGACTTTTGTATTTGGTTGAACAGCAAACACTGGAGGCATTGCTTGAAGCAGGCTATTCTTTGGTAAAAGAACAGCAATTGATCATGGAGACTAAACTTTCAAAAGAATACATGAAGAACATGGACGACTAG

mRNA sequence

ATGGCTTTCTCTATATCCGGCCTCTCCCTTCCCTCAGTCTTCCAGTACAAAAGTTCAATACTAGCGCGAAAACCTCGATTCCGTTCCTTCTCCATTCGATCTTCCAAGGATGTCTCCGGTGAAGTCGGCAGCGGCGTCGACGGCGGCGAGCCGTCGCATAGGCCGAAGAGGCTGTCGGAGCAGTCCACTTGGGAAGCCAAGGACTCCGAGGGCAGGGACTATCTCTATAGGCTTGGCAACGAGGCGGATAACATGAACATCGCCGTCGGAGCTAGAGCTGGCGTCATCGATGATCTCTTCGCCGGAAACTTCCTTGGCAAAGACTCGGACATTGTGTTTGATTATCGCCAGAAGGTCACAAGATCATTCGAGCATCTTCAAGGAGACTATTACATTGCTCCTATTTTCATGGTAGCAGGCTTGAACTTAGCACACGTTAACAAGGTCTCTGTTATTGATGCAGTATGCCACATTGTGAAGAACTTCATGGTTCACCTTCTCAATGTCAAAGTTCCACTCATCTTAGGTGTTTGGGGAGGAAAGGGTCAAGGAAAGACATTTCAGACGGAACTTATATTCCAGGCCATGGGAGTGGAACCCGTGATAATGTCTGCTGGAGAGTTAGAATCAGAAAGAGCTGGTGAGCCAGGAAAACTGATACGTGAACGCTATAGAACTGCCTCTCAAGTGGTCCAGAATCAAGCCATGAAGTGTATGTATTTACCACTTAGGAGCACACTGAACAGCTCTGTGTTCAGTTGGTCATGTTTCCAATCAGGGCTGTCCAAACCTTTTGTATGGGGGAAATTGAGTTGTTTGATGATCAATGATATTGATGCTGGCATTGGTAGATTTGGTAAGGTGACAGTCAACAATCAAATTGTCTCTGGTACTCTGATGAATCTAGCTGACAATCCTACCAGAGTTAGCATTGGACAAGATTGGCGACAAGCAGATATTTTGAACAGAATTCCAATCATCCTTACAGGAAATGATTTTTCAACTATTTATGCTCCCTTAATTCGTGATGGCAGGATGGAGAAATTCTACTGGCAGCCTAACCGTGAAGACATCGTGAATATTGTCCATAGAATGTATGAGAAAGATGGGATATCAAGGGCTCAGGTTGTTGACATCGTCAACAAATTTCCTAACCAAGCTTTGGATTTTTATGGAGCTCTAAGATCACGGACATACGATGCAGCCATATCCAAGTGGGTTGATGAAATTGGAGGAGTGGAAAAGCTAGGAGAAAAGCTGCTTAAGAGAAGGAAGAATGAAAAGCTTCCTACATTCACACCACCAGAGCAAACACTGGAGGCATTGCTTGAAGCAGGCTATTCTTTGGTAAAAGAACAGCAATTGATCATGGAGACTAAACTTTCAAAAGAATACATGAAGAACATGGACGACTAG

Coding sequence (CDS)

ATGGCTTTCTCTATATCCGGCCTCTCCCTTCCCTCAGTCTTCCAGTACAAAAGTTCAATACTAGCGCGAAAACCTCGATTCCGTTCCTTCTCCATTCGATCTTCCAAGGATGTCTCCGGTGAAGTCGGCAGCGGCGTCGACGGCGGCGAGCCGTCGCATAGGCCGAAGAGGCTGTCGGAGCAGTCCACTTGGGAAGCCAAGGACTCCGAGGGCAGGGACTATCTCTATAGGCTTGGCAACGAGGCGGATAACATGAACATCGCCGTCGGAGCTAGAGCTGGCGTCATCGATGATCTCTTCGCCGGAAACTTCCTTGGCAAAGACTCGGACATTGTGTTTGATTATCGCCAGAAGGTCACAAGATCATTCGAGCATCTTCAAGGAGACTATTACATTGCTCCTATTTTCATGGTAGCAGGCTTGAACTTAGCACACGTTAACAAGGTCTCTGTTATTGATGCAGTATGCCACATTGTGAAGAACTTCATGGTTCACCTTCTCAATGTCAAAGTTCCACTCATCTTAGGTGTTTGGGGAGGAAAGGGTCAAGGAAAGACATTTCAGACGGAACTTATATTCCAGGCCATGGGAGTGGAACCCGTGATAATGTCTGCTGGAGAGTTAGAATCAGAAAGAGCTGGTGAGCCAGGAAAACTGATACGTGAACGCTATAGAACTGCCTCTCAAGTGGTCCAGAATCAAGCCATGAAGTGTATGTATTTACCACTTAGGAGCACACTGAACAGCTCTGTGTTCAGTTGGTCATGTTTCCAATCAGGGCTGTCCAAACCTTTTGTATGGGGGAAATTGAGTTGTTTGATGATCAATGATATTGATGCTGGCATTGGTAGATTTGGTAAGGTGACAGTCAACAATCAAATTGTCTCTGGTACTCTGATGAATCTAGCTGACAATCCTACCAGAGTTAGCATTGGACAAGATTGGCGACAAGCAGATATTTTGAACAGAATTCCAATCATCCTTACAGGAAATGATTTTTCAACTATTTATGCTCCCTTAATTCGTGATGGCAGGATGGAGAAATTCTACTGGCAGCCTAACCGTGAAGACATCGTGAATATTGTCCATAGAATGTATGAGAAAGATGGGATATCAAGGGCTCAGGTTGTTGACATCGTCAACAAATTTCCTAACCAAGCTTTGGATTTTTATGGAGCTCTAAGATCACGGACATACGATGCAGCCATATCCAAGTGGGTTGATGAAATTGGAGGAGTGGAAAAGCTAGGAGAAAAGCTGCTTAAGAGAAGGAAGAATGAAAAGCTTCCTACATTCACACCACCAGAGCAAACACTGGAGGCATTGCTTGAAGCAGGCTATTCTTTGGTAAAAGAACAGCAATTGATCATGGAGACTAAACTTTCAAAAGAATACATGAAGAACATGGACGACTAG

Protein sequence

MAFSISGLSLPSVFQYKSSILARKPRFRSFSIRSSKDVSGEVGSGVDGGEPSHRPKRLSEQSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQAMKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFGKVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNMDD

Homology

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BLAST of ClCG09G003540 vs. Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.2e-70
Identity = 156/381 (40.94%), Postives = 221/381 (58.01%), Query Frame = 1


Query: 94  GVIDDLFAGNFLGKDSDIVFDYRQKVTRS-----FEHLQGDYYIAPIFMVAGLNLAHVNK 153
           G++D LF         + +    + +++      F++     YIAP FM         +K
Sbjct: 78  GIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFM---------DK 137

Query: 154 VSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGEL 213
           + V     H+ KNFM  L N+KVPLILG+WGGKGQGK+FQ EL+F  MG+ P++MSAGEL
Sbjct: 138 LIV-----HLAKNFMT-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 197

Query: 214 ESERAGEPGKLIRERYRTASQVVQNQAMKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWG 273
           ES   GEP           +++++ +     Y      +N                   G
Sbjct: 198 ESGN-GEP-----------AKLIRQR-----YREAADIINK------------------G 257

Query: 274 KLSCLMINDIDAGIGRFG---KVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIP 333
           K+ CL IND+DAG GR G   + TVNNQ+V+ TLMN+AD PT V +   + + +   R+P
Sbjct: 258 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEEN-PRVP 317

Query: 334 IILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPN 393
           II+TGNDFST+YAPLIRDGRMEKFYW P RED + +   ++  D +    VV +V+ FP 
Sbjct: 318 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPG 377

Query: 394 QALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEA 453
           Q++DF+GALR+R YD  + KWV EI GVE + ++L+  R  E  PTF  P+ T+E L+E 
Sbjct: 378 QSIDFFGALRARVYDDEVRKWVGEI-GVENISKRLVNSR--EGPPTFDQPKMTIEKLMEY 404

Query: 454 GYSLVKEQQLIMETKLSKEYM 467
           G+ LV+EQ+ +   +L+ +Y+
Sbjct: 438 GHMLVQEQENVKRVQLADKYL 404

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BLAST of ClCG09G003540 vs. Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 256.9 bits (655), Expect = 4.3e-67
Identity = 173/474 (36.50%), Postives = 253/474 (53.38%), Query Frame = 1


Query: 2   AFSISGLSLPSVFQYKSSILARKPRFRSFSIRSSKDVSGEVGSGVDGGEPSHRPKRLSEQ 61
           AFS S +  P+    +SS L +K         +   VS  V         + R K ++ +
Sbjct: 4   AFS-STVGAPASTPTRSSFLGKK--------LNKPQVSAAVTYHGKSSSSNSRFKAMAAK 63

Query: 62  STWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIV----FDYRQ 121
              E K ++  D    L  +  +    +    G++D+LF    +G  + +     +DY  
Sbjct: 64  EVDETKQTD-EDRWKGLAYDISDDQQDITRGKGLVDNLFQAP-MGDGTHVAVLSSYDYIS 123

Query: 122 KVTRS--FEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLIL 181
           +  +S  F+++   +YIA  FM         +K+     V H+ KNFM  L N+KVPLIL
Sbjct: 124 QGQKSYNFDNMMDGFYIAKGFM---------DKL-----VVHLSKNFMT-LPNIKVPLIL 183

Query: 182 GVWGGKGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQA 241
           G+WGGKGQGK+FQ EL+F  MG+ P++M             G+L        +++++ + 
Sbjct: 184 GIWGGKGQGKSFQCELVFAKMGITPIMM-----------SAGELESGNAGEPAKLIRQRY 243

Query: 242 MKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFG---KVTVNN 301
            +                     S L K    GK+SCL IND+DAG GR G   + TVNN
Sbjct: 244 REA--------------------SDLIKK---GKMSCLFINDLDAGAGRMGGTTQYTVNN 303

Query: 302 QIVSGTLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQ 361
           Q+V+ TLMN+ADNPT V +   + + D   R+PII+TGNDFST+YAPLIRDGRMEKFYW 
Sbjct: 304 QMVNATLMNIADNPTNVQLPGMYNKEDN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 363

Query: 362 PNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGG 421
           P RED + +   ++  DG+    VV +V+ FP Q++DF+GALR+R YD  + +WV E  G
Sbjct: 364 PTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSET-G 413

Query: 422 VEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYM 467
           VE +  KL+  +  E  PTF  P+ T+E LLE G+ LV EQ+ +   +L+ +Y+
Sbjct: 424 VENIARKLVNSK--EGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYL 413

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BLAST of ClCG09G003540 vs. Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 255.4 bits (651), Expect = 1.2e-66
Identity = 145/349 (41.55%), Postives = 204/349 (58.45%), Query Frame = 1


Query: 120 TRSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWG 179
           T  F++  G +YIAP FM         +K+     V HI KNFM  L N+KVPLILG+WG
Sbjct: 112 TYDFDNTMGGFYIAPAFM---------DKL-----VVHISKNFMT-LPNIKVPLILGIWG 171

Query: 180 GKGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQAMKCM 239
           GKGQGK+FQ EL+F  MG+ P++MSAGELES  AGEP KLIR+RYR A+ +++   M C+
Sbjct: 172 GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 231

Query: 240 YLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMIND--IDAGIGRFGKVTVNNQIVSG 299
           ++             +   +G  +    G  +   +N+  ++A +        N Q+   
Sbjct: 232 FI-------------NDLDAGAGR---MGGTTQYTVNNQMVNATLMNIADNPTNVQLPG- 291

Query: 300 TLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 359
            + N  DNP                 +PII+TGNDFST+YAPLIRDGRMEKFYW P R+D
Sbjct: 292 -MYNKEDNPR----------------VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 351

Query: 360 IVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLG 419
            V +   ++  D +    +V IV+ FP Q++DF+GALR+R YD  + KWV +  GVE +G
Sbjct: 352 RVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDT-GVENIG 408

Query: 420 EKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYM 467
           ++L+  R  E  P F  P+ T+E L+E GY LVKEQ+ +   +L+++Y+
Sbjct: 412 KRLVNSR--EGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYL 408

[Close]

BLAST of ClCG09G003540 vs. Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-65
Identity = 154/438 (35.16%), Postives = 231/438 (52.74%), Query Frame = 1


Query: 36  KDVSGEVGSGVDGGEPSHRPKRLSEQSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGV 95
           K +  +V S V+    S +  R +  +     +    D    L  +  +    +    G+
Sbjct: 22  KKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGI 81

Query: 96  IDDLFAGNFLGKDSDIVFDYRQKVTRS-----FEHLQGDYYIAPIFMVAGLNLAHVNKVS 155
           +D LF         + V    + V++      F++  G +YIAP FM         +K+ 
Sbjct: 82  VDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFM---------DKL- 141

Query: 156 VIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGELES 215
               V H+ KNFM  L N+K+PLILG+WGGKGQGK+FQ EL+F  MG+ P++MSAGELES
Sbjct: 142 ----VVHLSKNFMT-LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 201

Query: 216 ERAGEPGKLIRERYRTASQVVQNQAMKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWGKL 275
             AGEP KLIR+RYR A+ +++   M C+++             +   +G  +    G  
Sbjct: 202 GNAGEPAKLIRQRYREAADMIKKGKMCCLFI-------------NDLDAGAGR---MGGT 261

Query: 276 SCLMIND--IDAGIGRFGKVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIPIIL 335
           +   +N+  ++A +        N Q+    + N  +NP                R+PI++
Sbjct: 262 TQYTVNNQMVNATLMNIADAPTNVQLPG--MYNKRENP----------------RVPIVV 321

Query: 336 TGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQAL 395
           TGNDFST+YAPLIRDGRMEKFYW P R+D + +   +++ D +S   VV IV+ FP Q++
Sbjct: 322 TGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSI 381

Query: 396 DFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAGYS 455
           DF+GALR+R YD  + KWV    G+E +G++L+  R      TF  P+ T+E LLE G+ 
Sbjct: 382 DFFGALRARVYDDEVRKWVGST-GIENIGKRLVNSRDGP--VTFEQPKMTVEKLLEYGHM 407

Query: 456 LVKEQQLIMETKLSKEYM 467
           LV+EQ  +   +L+  YM
Sbjct: 442 LVQEQDNVKRVQLADTYM 407

[Close]

BLAST of ClCG09G003540 vs. Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.4e-64
Identity = 145/380 (38.16%), Postives = 215/380 (56.58%), Query Frame = 1


Query: 94  GVIDDLFAGNFLGKDSDIV---FDYRQKVTRSF--EHLQGDYYIAPIFMVAGLNLAHVNK 153
           G++D LF           V   +DY  +  R +  ++    +YIAP FM         +K
Sbjct: 90  GMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFM---------DK 149

Query: 154 VSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGEL 213
           +     V HI KNF+  L N+K+PLILG+WGGKGQGK+FQ EL+F  MG+ P++MSAGEL
Sbjct: 150 L-----VVHITKNFL-SLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 209

Query: 214 ESERAGEPGKLIRERYRTASQVVQNQAMKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWG 273
           ES  AGEP KLIR+RYR A+ +++   M C+++             +   +G  +    G
Sbjct: 210 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFI-------------NDLDAGAGR---MG 269

Query: 274 KLSCLMIND--IDAGIGRFGKVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIPI 333
             +   +N+  ++A +        N Q+    + N  +NP                 +PI
Sbjct: 270 GTTQYTVNNQMVNATLMNIADNPTNVQLPG--MYNKEENPR----------------VPI 329

Query: 334 ILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQ 393
           I+TGNDFST+YAPLIRDGRMEKFYW P RED + +   ++  D +    +V +V++FP Q
Sbjct: 330 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQ 389

Query: 394 ALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAG 453
           ++DF+GALR+R YD  + KWV E+ GV+ +G+KL+  +  E  PTF  P+ T++ LL+ G
Sbjct: 390 SIDFFGALRARVYDDEVRKWVSEV-GVDTIGKKLVNSK--EGPPTFEQPKMTIDKLLQYG 417

Query: 454 YSLVKEQQLIMETKLSKEYM 467
             LV+EQ+ +   +L+ +YM
Sbjct: 450 NMLVEEQENVKRVQLADKYM 417

[Close]

BLAST of ClCG09G003540 vs. TrEMBL
Match: A0A0A0K6Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430770 PE=4 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 8.0e-206
Identity = 378/474 (79.75%), Postives = 407/474 (85.86%), Query Frame = 1


Query: 1   MAFSISGLSLPSVFQYKSSILARKPRFRSFSIRSSKDVSGEVGSGVDGGEPSHRPKRLSE 60
           MAFSISGLSLPS+ +YKSSIL RKPRF SFS+RSS DVSGE+GSG DG E + RPKRLSE
Sbjct: 1   MAFSISGLSLPSILRYKSSILPRKPRFPSFSVRSSNDVSGEIGSGGDGSESAKRPKRLSE 60

Query: 61  QSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVT 120
           QS+WEAKDSEG+DYLYRLG+EADNMNIAVGARAGVIDD+FAGNFLGKDSDIVFDYRQKVT
Sbjct: 61  QSSWEAKDSEGKDYLYRLGSEADNMNIAVGARAGVIDDVFAGNFLGKDSDIVFDYRQKVT 120

Query: 121 RSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGG 180
           R+FEH+QGDYYIAP FM         +KV     VCH+VKNF+VHLL+VKVPLILGVWGG
Sbjct: 121 RTFEHIQGDYYIAPTFM---------DKV-----VCHLVKNFIVHLLDVKVPLILGVWGG 180

Query: 181 KGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQA-MKCM 240
           KGQGK+FQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ  M C+
Sbjct: 181 KGQGKSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 240

Query: 241 YLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFG--KVTVNNQIVSG 300
            +             +   +G+                     GRFG  +VTVNNQIVSG
Sbjct: 241 MI-------------NDIDAGI---------------------GRFGQTQVTVNNQIVSG 300

Query: 301 TLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 360
           TLMNLADNPTRVSIGQDWR+ADIL+RIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED
Sbjct: 301 TLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 360

Query: 361 IVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLG 420
           IVNIVHRMYEKDGISRAQVVDIVN FPNQALDFYGALRSRTYD+AISKWVD+IGGVEKLG
Sbjct: 361 IVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGALRSRTYDSAISKWVDDIGGVEKLG 420

Query: 421 EKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNMDD 472
           EKLL+RRK+EKLPTFTPPEQTLEALL+AGYSLVKEQQLIMETKLSKEYMKNMDD
Sbjct: 421 EKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 426

[Close]

BLAST of ClCG09G003540 vs. TrEMBL
Match: B9GLS2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07440g PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 7.1e-170
Identity = 311/430 (72.33%), Postives = 354/430 (82.33%), Query Frame = 1


Query: 44  SGVDGGEPSHRPKR-LSEQSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAG 103
           S VD    +  PKR LS+QS+WEAKDSEG+DYLYRLG EADNMNIAVGARAGV+D LFAG
Sbjct: 45  SPVDDNSENEEPKRRLSQQSSWEAKDSEGKDYLYRLGKEADNMNIAVGARAGVVDSLFAG 104

Query: 104 NFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNF 163
           NFLGKDSDIVFDYRQKVTRSFE+LQGDYYIAP+F+         +KV     VCHIVKN+
Sbjct: 105 NFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPLFL---------DKV-----VCHIVKNY 164

Query: 164 MVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRE 223
           + H LNVKVPLILG+WGGKGQGK+FQTELIFQ +GVEPVIMSAGELESERAGEPG+LIRE
Sbjct: 165 LAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGRLIRE 224

Query: 224 RYRTASQVVQNQA-MKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAG 283
           RYRTASQVVQNQ  M C+ +             +   +GL +   +G             
Sbjct: 225 RYRTASQVVQNQGKMSCLMI-------------NDLDAGLGR---FGNT----------- 284

Query: 284 IGRFGKVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLI 343
                ++TVNNQIV GTLMNL+DNPTRVSIGQDWR++DI NR+PII+TGNDFSTIYAPLI
Sbjct: 285 -----QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRVPIIVTGNDFSTIYAPLI 344

Query: 344 RDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDA 403
           RDGRMEKFYWQPNREDIVNIVHRMYEKDGISR +VV IVNKFPNQALDFYGALRSRTYD 
Sbjct: 345 RDGRMEKFYWQPNREDIVNIVHRMYEKDGISRDEVVSIVNKFPNQALDFYGALRSRTYDR 404

Query: 404 AISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKL 463
           +ISKWVD+IGG+E LG++LL+R+K+EKLP FTPPEQT+EALLE+G+SL++EQQLIMETKL
Sbjct: 405 SISKWVDDIGGIENLGKQLLRRKKDEKLPEFTPPEQTMEALLESGHSLIREQQLIMETKL 428

Query: 464 SKEYMKNMDD 472
           SKEYMKN+DD
Sbjct: 465 SKEYMKNVDD 428

[Close]

BLAST of ClCG09G003540 vs. TrEMBL
Match: K4BLT6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 2.7e-169
Identity = 316/451 (70.07%), Postives = 362/451 (80.27%), Query Frame = 1


Query: 25  PRFRSFSIR--SSKDVSGEVGSGVDGGEPSHRPKRLSEQSTWEAKDSEGRDYLYRLGNEA 84
           P + S S+R  S+   S EV    D  EP  + KRLSEQS+WE KDS+G+DYLYRLG EA
Sbjct: 29  PNYSSISVRCSSTNQQSDEVRDS-DQDEPKKK-KRLSEQSSWETKDSDGKDYLYRLGAEA 88

Query: 85  DNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFMVAGLN 144
           DNMNIAVGARAGVID LFAGNFLGKDSDIVFDYRQKVTRSF++LQGDYYIAP+F+     
Sbjct: 89  DNMNIAVGARAGVIDSLFAGNFLGKDSDIVFDYRQKVTRSFQYLQGDYYIAPVFL----- 148

Query: 145 LAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVI 204
               +KV     VCHIVKN++ ++LN KVPLILGVWGGKGQGKTFQTELIFQAMG+EPVI
Sbjct: 149 ----DKV-----VCHIVKNYISNILNAKVPLILGVWGGKGQGKTFQTELIFQAMGIEPVI 208

Query: 205 MSAGELESERAGEPGKLIRERYRTASQVVQNQAMKCMYLPLRSTLNSSVFSWSCFQSGLS 264
           MSAGELESERAGEPGKLIRERYRTASQVVQNQ                V S++ F +G  
Sbjct: 209 MSAGELESERAGEPGKLIRERYRTASQVVQNQ----------------VRSFTAFITG-- 268

Query: 265 KPFVWGKLSCLMINDIDAGIGRFG--KVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADI 324
                GK+S LMINDIDAG+GRFG  +VTVNNQIV GTLMNL DNPTRVS+GQDWR+ DI
Sbjct: 269 ----HGKMSVLMINDIDAGLGRFGNTQVTVNNQIVVGTLMNLCDNPTRVSVGQDWREGDI 328

Query: 325 LNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIV 384
            +RIPII+TGNDFST+YAPLIRDGRMEKFYWQP +EDIVNIV RMYEKDGI++ +V  IV
Sbjct: 329 THRIPIIVTGNDFSTMYAPLIRDGRMEKFYWQPTQEDIVNIVCRMYEKDGITKDEVATIV 388

Query: 385 NKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLE 444
           N FPNQALDFYGA+RSRTYD +I KWV++ GG E +G + L++RK  +LP F PPEQTLE
Sbjct: 389 NTFPNQALDFYGAMRSRTYDQSILKWVEDSGGAEDIGRRFLRQRKKGELPVFIPPEQTLE 441

Query: 445 ALLEAGYSLVKEQQLIMETKLSKEYMKNMDD 472
           AL+E+G+SL KEQ LIME+KLSKEYMKNMD+
Sbjct: 449 ALIESGHSLTKEQMLIMESKLSKEYMKNMDE 441

[Close]

BLAST of ClCG09G003540 vs. TrEMBL
Match: A0A0J8BRF1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189100 PE=4 SV=1)

HSP 1 Score: 596.7 bits (1537), Expect = 2.5e-167
Identity = 319/482 (66.18%), Postives = 367/482 (76.14%), Query Frame = 1


Query: 3   FSISGLSLPSVFQYKSSILARKP-----RFRSFSIRSSKDVSGEV---GSGVDGGEPS-- 62
           F++  LS  S F  K S   RKP      F+ F+I    +   E+    S      PS  
Sbjct: 19  FNLQSLSFLSSFPPKLSQSTRKPVRFRVSFKKFTIFQELNNGNEIEDNNSNKSSESPSIP 78

Query: 63  HRPKRLSEQSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIV 122
            R KRLSEQS+WEAKD++G DYLYRLG EADN+NI VGAR+GVIDDLFAGNFLGKDSDIV
Sbjct: 79  QRKKRLSEQSSWEAKDAKGNDYLYRLGAEADNINITVGARSGVIDDLFAGNFLGKDSDIV 138

Query: 123 FDYRQKVTRSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVP 182
           FDYRQKVTRSFE+LQGDYYIAP+F+         +KV     VCHIVKN++ HLLNVKVP
Sbjct: 139 FDYRQKVTRSFEYLQGDYYIAPLFL---------DKV-----VCHIVKNYIAHLLNVKVP 198

Query: 183 LILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQ 242
           LILG+WGGKGQGKTFQTELIFQAMGVEPVI+SAGELESE+AGEPG+LIRERYRTASQVVQ
Sbjct: 199 LILGIWGGKGQGKTFQTELIFQAMGVEPVIISAGELESEKAGEPGRLIRERYRTASQVVQ 258

Query: 243 NQA-MKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFG--KVT 302
           NQ  + C+ +             +   +G+                     GRFG  +VT
Sbjct: 259 NQGKLSCLVV-------------NDIDAGI---------------------GRFGDTQVT 318

Query: 303 VNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKF 362
           VNNQIVSGTLMNLADNPTRVSIGQ+WR++D+ +RIPII+TGNDFSTIYAPLIRDGRMEKF
Sbjct: 319 VNNQIVSGTLMNLADNPTRVSIGQNWRESDVTHRIPIIVTGNDFSTIYAPLIRDGRMEKF 378

Query: 363 YWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDE 422
           YW+PN EDIVNIV+RMYEKDGISR +VV IVN FPNQALDFYGALRSRTYD ++ KWVD+
Sbjct: 379 YWRPNHEDIVNIVNRMYEKDGISREEVVGIVNTFPNQALDFYGALRSRTYDRSLLKWVDD 438

Query: 423 IGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNM 472
            GGVE LG  LLKR+K +KLP F PPEQ +EALLE+GYSLVKEQQL+MET+LSKEYMKN+
Sbjct: 439 CGGVENLGATLLKRKKGDKLPVFVPPEQNVEALLESGYSLVKEQQLVMETRLSKEYMKNI 452

[Close]

BLAST of ClCG09G003540 vs. TrEMBL
Match: A0A061GE43_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Theobroma cacao GN=TCM_029279 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 3.6e-166
Identity = 319/468 (68.16%), Postives = 366/468 (78.21%), Query Frame = 1


Query: 10  LPSVFQYKSSILARKPRFRSFSIR-SSKDVSGEVGSGVDGGEPSH--RPKRLSEQSTWEA 69
           LPSVF  K   ++      SF I  SSK    +V +  D     +   PKRLSEQS+WEA
Sbjct: 14  LPSVFPKKLLSVSS-----SFPISCSSKSTPNQVKNNDDNSNIDNPKEPKRLSEQSSWEA 73

Query: 70  KDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVTRSFEHL 129
           KDSEGRDYLYRLG EADNMNIAVGARAGVIDDLFAGNFLG+DSD+VFDYRQKVT+SFE+L
Sbjct: 74  KDSEGRDYLYRLGKEADNMNIAVGARAGVIDDLFAGNFLGRDSDVVFDYRQKVTKSFEYL 133

Query: 130 QGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKT 189
           QGDYYIAP FM         +KV     VCHIVKN++ +LLNVK+PLILG+WGGKGQGK+
Sbjct: 134 QGDYYIAPAFM---------DKV-----VCHIVKNYLAYLLNVKIPLILGIWGGKGQGKS 193

Query: 190 FQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQA-MKCMYLPLRS 249
           FQTELIFQAMG+EPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ  M C+ +    
Sbjct: 194 FQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI---- 253

Query: 250 TLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFGKVTVNNQIV--SGTLMNLA 309
                    +   +GL +   +G                  ++TVNNQIV  +  LMNL+
Sbjct: 254 ---------NDIDAGLGR---FGNT----------------QMTVNNQIVVGT--LMNLS 313

Query: 310 DNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVH 369
           DNPTRVSIGQDWR++DI NRIPII TGNDFST+YAPLIRDGRMEKFYWQP  EDIVNIVH
Sbjct: 314 DNPTRVSIGQDWRESDITNRIPIIATGNDFSTLYAPLIRDGRMEKFYWQPTHEDIVNIVH 373

Query: 370 RMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKR 429
           RMYEKDGIS+  VV+IV+KFPNQALDFYGALRSRTYD +I+KW+++IGGVEKLG KLL+R
Sbjct: 374 RMYEKDGISKDDVVNIVDKFPNQALDFYGALRSRTYDRSIAKWIEDIGGVEKLGHKLLRR 428

Query: 430 RKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNMDD 472
           RKNE+LP +TPP+QT+EALLE+GYSL++EQQLI ETKLSKEYMKNMDD
Sbjct: 434 RKNEELPVYTPPKQTVEALLESGYSLLREQQLITETKLSKEYMKNMDD 428

[Close]

BLAST of ClCG09G003540 vs. TAIR10
Match: AT1G73110.1 (AT1G73110.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 575.1 bits (1481), Expect = 4.0e-164
Identity = 299/456 (65.57%), Postives = 353/456 (77.41%), Query Frame = 1


Query: 18  SSILARKPRFRSFSIRSSKDVSGEVGSGVDGGEPSHRPKRLSEQSTWEAKDSEGRDYLYR 77
           SSI+  KP        SS D  G+V +   G +P    K+LSEQS+WE KDSEG+DYLYR
Sbjct: 36  SSIVCSKP--------SSND-GGKVANDDGGAKPR---KKLSEQSSWEVKDSEGKDYLYR 95

Query: 78  LGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFM 137
           LG E+DN+NIAVGAR+G+IDD+F G+FLGKDSDIVFDYRQK TRSFEHLQGDYYIAP F+
Sbjct: 96  LGAESDNVNIAVGARSGMIDDVFIGDFLGKDSDIVFDYRQKATRSFEHLQGDYYIAPSFL 155

Query: 138 VAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMG 197
                    +KV+V     HIVKN++   LN+K+PLILG+WGGKGQGKTFQTELIF+ MG
Sbjct: 156 ---------DKVAV-----HIVKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMG 215

Query: 198 VEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQAMKCMYLPLRSTLNSSVFSWSCF 257
           VEPVIMSAGELES+RAGEPG+LIR+RYRTASQV+QNQ    + +     +N         
Sbjct: 216 VEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLM-----IND-------- 275

Query: 258 QSGLSKPFVWGKLSCLMINDIDAGIGRFG--KVTVNNQIVSGTLMNLADNPTRVSIGQDW 317
                               IDAG+GRFG  ++TVNNQIV GTLMNLADNPTRVS+GQ+W
Sbjct: 276 --------------------IDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRVSVGQEW 335

Query: 318 RQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQ 377
           R+AD++NR+P+I+TGNDFST+YAPLIR+GRMEKFYWQP REDIVNIV RMYEKDGISR  
Sbjct: 336 READMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGISRKD 395

Query: 378 VVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPP 437
           V+ IV+KFPNQALDFYGALRSRTYD +I KWVDE GG+E LG+ LL+R+K +++P FT P
Sbjct: 396 VISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQFTAP 432

Query: 438 EQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNMDD 472
           EQT+EALLE+GYSL+ EQ+LIMETKLSKEYMKNMDD
Sbjct: 456 EQTVEALLESGYSLINEQKLIMETKLSKEYMKNMDD 432

[Close]

BLAST of ClCG09G003540 vs. TAIR10
Match: AT2G39730.1 (AT2G39730.1 rubisco activase)

HSP 1 Score: 197.2 bits (500), Expect = 2.3e-50
Identity = 100/202 (49.50%), Postives = 137/202 (67.82%), Query Frame = 1


Query: 268 GKLSCLMINDIDAGIGRFG---KVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRI 327
           GK+ CL IND+DAG GR G   + TVNNQ+V+ TLMN+ADNPT V +   + + +   R+
Sbjct: 220 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENA-RV 279

Query: 328 PIILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFP 387
           PII TGNDFST+YAPLIRDGRMEKFYW P RED + +   ++  D I    +V +V++FP
Sbjct: 280 PIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFP 339

Query: 388 NQALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLE 447
            Q++DF+GALR+R YD  + K+V+ + GVEK+G++L+  R  E  P F  PE T E L+E
Sbjct: 340 GQSIDFFGALRARVYDDEVRKFVESL-GVEKIGKRLVNSR--EGPPVFEQPEMTYEKLME 399

Query: 448 AGYSLVKEQQLIMETKLSKEYM 467
            G  LV EQ+ +   +L++ Y+
Sbjct: 400 YGNMLVMEQENVKRVQLAETYL 417

HSP 2 Score: 117.5 bits (293), Expect = 2.3e-26
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1


Query: 122 SFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGK 181
           + +++   +YIAP FM         +K+     V HI KNF+  L N+KVPLILG+WGGK
Sbjct: 123 NLDNMMDGFYIAPAFM---------DKL-----VVHITKNFLT-LPNIKVPLILGIWGGK 182

Query: 182 GQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQAMKCMYL 241
           GQGK+FQ EL+   MG+ P++MSAGELES  AGEP KLIR+RYR A+ +++   M C+++
Sbjct: 183 GQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFI 227

[Close]

BLAST of ClCG09G003540 vs. NCBI nr
Match: gi|659122568|ref|XP_008461213.1| (PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucumis melo])

HSP 1 Score: 736.9 bits (1901), Expect = 2.2e-209
Identity = 387/474 (81.65%), Postives = 407/474 (85.86%), Query Frame = 1


Query: 1   MAFSISGLSLPSVFQYKSSILARKPRFRSFSIRSSKDVSGEVGSGVDGGEPSHRPKRLSE 60
           MAFSISGLSLPSVF+YKSSILARKPRF SFS+RSS DVS EVGSG DG + S RPKRLSE
Sbjct: 1   MAFSISGLSLPSVFRYKSSILARKPRFHSFSVRSSNDVSSEVGSGGDGSDSSKRPKRLSE 60

Query: 61  QSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVT 120
           QSTWEAKDSEG+DYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVT
Sbjct: 61  QSTWEAKDSEGKDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVT 120

Query: 121 RSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGG 180
           RSFEHLQGDYYIAP FM         +KV     VCHIVKNF+VHLLNVKVPLILGVWGG
Sbjct: 121 RSFEHLQGDYYIAPTFM---------DKV-----VCHIVKNFIVHLLNVKVPLILGVWGG 180

Query: 181 KGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQA-MKCM 240
           KGQGK+FQTELIFQ MGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ  M C+
Sbjct: 181 KGQGKSFQTELIFQMMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 240

Query: 241 YLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFG--KVTVNNQIVSG 300
            +             +   +G+                     GRFG  +VTVNNQIVSG
Sbjct: 241 MI-------------NDIDAGI---------------------GRFGQTQVTVNNQIVSG 300

Query: 301 TLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 360
           TLMNLADNPTRVS+GQDWR+ADIL+RIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED
Sbjct: 301 TLMNLADNPTRVSVGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 360

Query: 361 IVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLG 420
           IVNIVHRMYEKDGISRAQVVDIVN FPNQALDFYGALRSRTYD+AISKWVD+IGGVEKLG
Sbjct: 361 IVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGALRSRTYDSAISKWVDDIGGVEKLG 420

Query: 421 EKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNMDD 472
           EKLL+RRKNEKLPTFTPPEQTLEALL+AGYSLVKEQQLIMETKLSKEYMKNMDD
Sbjct: 421 EKLLRRRKNEKLPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 426

[Close]

BLAST of ClCG09G003540 vs. NCBI nr
Match: gi|449436220|ref|XP_004135891.1| (PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Cucumis sativus])

HSP 1 Score: 724.5 bits (1869), Expect = 1.2e-205
Identity = 378/474 (79.75%), Postives = 407/474 (85.86%), Query Frame = 1


Query: 1   MAFSISGLSLPSVFQYKSSILARKPRFRSFSIRSSKDVSGEVGSGVDGGEPSHRPKRLSE 60
           MAFSISGLSLPS+ +YKSSIL RKPRF SFS+RSS DVSGE+GSG DG E + RPKRLSE
Sbjct: 1   MAFSISGLSLPSILRYKSSILPRKPRFPSFSVRSSNDVSGEIGSGGDGSESAKRPKRLSE 60

Query: 61  QSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAGNFLGKDSDIVFDYRQKVT 120
           QS+WEAKDSEG+DYLYRLG+EADNMNIAVGARAGVIDD+FAGNFLGKDSDIVFDYRQKVT
Sbjct: 61  QSSWEAKDSEGKDYLYRLGSEADNMNIAVGARAGVIDDVFAGNFLGKDSDIVFDYRQKVT 120

Query: 121 RSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNFMVHLLNVKVPLILGVWGG 180
           R+FEH+QGDYYIAP FM         +KV     VCH+VKNF+VHLL+VKVPLILGVWGG
Sbjct: 121 RTFEHIQGDYYIAPTFM---------DKV-----VCHLVKNFIVHLLDVKVPLILGVWGG 180

Query: 181 KGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQA-MKCM 240
           KGQGK+FQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQ  M C+
Sbjct: 181 KGQGKSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCL 240

Query: 241 YLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAGIGRFG--KVTVNNQIVSG 300
            +             +   +G+                     GRFG  +VTVNNQIVSG
Sbjct: 241 MI-------------NDIDAGI---------------------GRFGQTQVTVNNQIVSG 300

Query: 301 TLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 360
           TLMNLADNPTRVSIGQDWR+ADIL+RIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED
Sbjct: 301 TLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFSTIYAPLIRDGRMEKFYWQPNRED 360

Query: 361 IVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDAAISKWVDEIGGVEKLG 420
           IVNIVHRMYEKDGISRAQVVDIVN FPNQALDFYGALRSRTYD+AISKWVD+IGGVEKLG
Sbjct: 361 IVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGALRSRTYDSAISKWVDDIGGVEKLG 420

Query: 421 EKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKLSKEYMKNMDD 472
           EKLL+RRK+EKLPTFTPPEQTLEALL+AGYSLVKEQQLIMETKLSKEYMKNMDD
Sbjct: 421 EKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQLIMETKLSKEYMKNMDD 426

[Close]

BLAST of ClCG09G003540 vs. NCBI nr
Match: gi|224057192|ref|XP_002299165.1| (hypothetical protein POPTR_0001s07440g [Populus trichocarpa])

HSP 1 Score: 605.1 bits (1559), Expect = 1.0e-169
Identity = 311/430 (72.33%), Postives = 354/430 (82.33%), Query Frame = 1


Query: 44  SGVDGGEPSHRPKR-LSEQSTWEAKDSEGRDYLYRLGNEADNMNIAVGARAGVIDDLFAG 103
           S VD    +  PKR LS+QS+WEAKDSEG+DYLYRLG EADNMNIAVGARAGV+D LFAG
Sbjct: 45  SPVDDNSENEEPKRRLSQQSSWEAKDSEGKDYLYRLGKEADNMNIAVGARAGVVDSLFAG 104

Query: 104 NFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFMVAGLNLAHVNKVSVIDAVCHIVKNF 163
           NFLGKDSDIVFDYRQKVTRSFE+LQGDYYIAP+F+         +KV     VCHIVKN+
Sbjct: 105 NFLGKDSDIVFDYRQKVTRSFEYLQGDYYIAPLFL---------DKV-----VCHIVKNY 164

Query: 164 MVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRE 223
           + H LNVKVPLILG+WGGKGQGK+FQTELIFQ +GVEPVIMSAGELESERAGEPG+LIRE
Sbjct: 165 LAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGRLIRE 224

Query: 224 RYRTASQVVQNQA-MKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVWGKLSCLMINDIDAG 283
           RYRTASQVVQNQ  M C+ +             +   +GL +   +G             
Sbjct: 225 RYRTASQVVQNQGKMSCLMI-------------NDLDAGLGR---FGNT----------- 284

Query: 284 IGRFGKVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIPIILTGNDFSTIYAPLI 343
                ++TVNNQIV GTLMNL+DNPTRVSIGQDWR++DI NR+PII+TGNDFSTIYAPLI
Sbjct: 285 -----QMTVNNQIVVGTLMNLSDNPTRVSIGQDWRESDITNRVPIIVTGNDFSTIYAPLI 344

Query: 344 RDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPNQALDFYGALRSRTYDA 403
           RDGRMEKFYWQPNREDIVNIVHRMYEKDGISR +VV IVNKFPNQALDFYGALRSRTYD 
Sbjct: 345 RDGRMEKFYWQPNREDIVNIVHRMYEKDGISRDEVVSIVNKFPNQALDFYGALRSRTYDR 404

Query: 404 AISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEAGYSLVKEQQLIMETKL 463
           +ISKWVD+IGG+E LG++LL+R+K+EKLP FTPPEQT+EALLE+G+SL++EQQLIMETKL
Sbjct: 405 SISKWVDDIGGIENLGKQLLRRKKDEKLPEFTPPEQTMEALLESGHSLIREQQLIMETKL 428

Query: 464 SKEYMKNMDD 472
           SKEYMKN+DD
Sbjct: 465 SKEYMKNVDD 428

[Close]

BLAST of ClCG09G003540 vs. NCBI nr
Match: gi|298204740|emb|CBI25238.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 599.4 bits (1544), Expect = 5.6e-168
Identity = 311/446 (69.73%), Postives = 351/446 (78.70%), Query Frame = 1


Query: 30  FSIRSSKDVSGEVGSGVD-GGEPSHRPKRLSEQSTWEAKDSEGRDYLYRLGNEADNMNIA 89
           FS+R+    + +  +G   GGE   R  R+SEQS+WEAKDSEGRDYLYRLG EADNMNIA
Sbjct: 47  FSLRALNSSNNDNPTGESAGGEAGQR--RISEQSSWEAKDSEGRDYLYRLGKEADNMNIA 106

Query: 90  VGARAGVIDDLFAGNFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFMVAGLNLAHVNK 149
           VGARAG+IDDLF GNFLG+DSDIVFDYRQKVTRSFE+LQGDYYIAP+FM           
Sbjct: 107 VGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFM----------- 166

Query: 150 VSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGEL 209
                A+CHIVKN++ HLLN  VPLILG+WGGKGQGK+FQTELIFQAMG+EPVIMSAGEL
Sbjct: 167 -----AMCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 226

Query: 210 ESERAGEPGKLIRERYRTASQVVQNQA-MKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVW 269
           ESERAGEPGKLIRERYRTASQVVQNQ  M C+ +             +   +G+      
Sbjct: 227 ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI-------------NDIDAGI------ 286

Query: 270 GKLSCLMINDIDAGIGRFG--KVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIP 329
                          GRFG  +VTVNNQI  GTLMNL+DNPTRVSIGQDWR+ DI NR+P
Sbjct: 287 ---------------GRFGNTQVTVNNQIAVGTLMNLSDNPTRVSIGQDWRETDITNRVP 346

Query: 330 IILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPN 389
           II+TGNDFSTIYAPLIRDGRM+KFYWQP  EDI+NIV RMYEKDGISR  VV IV+ FPN
Sbjct: 347 IIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKDGISRDAVVRIVDTFPN 406

Query: 390 QALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEA 449
           QALDFYGALRSRTYD +ISKWVD+IGGVE LG KLL+RRK+EKLP F PP+QT++ALLE+
Sbjct: 407 QALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKLPVFVPPKQTIDALLES 440

Query: 450 GYSLVKEQQLIMETKLSKEYMKNMDD 472
           GYSL+KEQQLIMETKLSKEYMKN+DD
Sbjct: 467 GYSLIKEQQLIMETKLSKEYMKNIDD 440

[Close]

BLAST of ClCG09G003540 vs. NCBI nr
Match: gi|225443213|ref|XP_002270825.1| (PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Vitis vinifera])

HSP 1 Score: 599.4 bits (1544), Expect = 5.6e-168
Identity = 313/446 (70.18%), Postives = 353/446 (79.15%), Query Frame = 1


Query: 30  FSIRSSKDVSGEVGSGVD-GGEPSHRPKRLSEQSTWEAKDSEGRDYLYRLGNEADNMNIA 89
           FS+R+    + +  +G   GGE   R  R+SEQS+WEAKDSEGRDYLYRLG EADNMNIA
Sbjct: 47  FSLRALNSSNNDNPTGESAGGEAGQR--RISEQSSWEAKDSEGRDYLYRLGKEADNMNIA 106

Query: 90  VGARAGVIDDLFAGNFLGKDSDIVFDYRQKVTRSFEHLQGDYYIAPIFMVAGLNLAHVNK 149
           VGARAG+IDDLF GNFLG+DSDIVFDYRQKVTRSFE+LQGDYYIAP+FM         +K
Sbjct: 107 VGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFM---------DK 166

Query: 150 VSVIDAVCHIVKNFMVHLLNVKVPLILGVWGGKGQGKTFQTELIFQAMGVEPVIMSAGEL 209
           V     VCHIVKN++ HLLN  VPLILG+WGGKGQGK+FQTELIFQAMG+EPVIMSAGEL
Sbjct: 167 V-----VCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGEL 226

Query: 210 ESERAGEPGKLIRERYRTASQVVQNQA-MKCMYLPLRSTLNSSVFSWSCFQSGLSKPFVW 269
           ESERAGEPGKLIRERYRTASQVVQNQ  M C+ +             +   +G+      
Sbjct: 227 ESERAGEPGKLIRERYRTASQVVQNQGKMSCLMI-------------NDIDAGI------ 286

Query: 270 GKLSCLMINDIDAGIGRFG--KVTVNNQIVSGTLMNLADNPTRVSIGQDWRQADILNRIP 329
                          GRFG  +VTVNNQI  GTLMNL+DNPTRVSIGQDWR+ DI NR+P
Sbjct: 287 ---------------GRFGNTQVTVNNQIAVGTLMNLSDNPTRVSIGQDWRETDITNRVP 346

Query: 330 IILTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNKFPN 389
           II+TGNDFSTIYAPLIRDGRM+KFYWQP  EDI+NIV RMYEKDGISR  VV IV+ FPN
Sbjct: 347 IIVTGNDFSTIYAPLIRDGRMDKFYWQPTHEDIINIVDRMYEKDGISRDAVVRIVDTFPN 406

Query: 390 QALDFYGALRSRTYDAAISKWVDEIGGVEKLGEKLLKRRKNEKLPTFTPPEQTLEALLEA 449
           QALDFYGALRSRTYD +ISKWVD+IGGVE LG KLL+RRK+EKLP F PP+QT++ALLE+
Sbjct: 407 QALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKLPVFVPPKQTIDALLES 442

Query: 450 GYSLVKEQQLIMETKLSKEYMKNMDD 472
           GYSL+KEQQLIMETKLSKEYMKN+DD
Sbjct: 467 GYSLIKEQQLIMETKLSKEYMKNIDD 442

The following BLAST results are available for this feature:

BLAST of ClCG09G003540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RCAB_HORVU	9.2e-70	40.94	Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum...	[more]
RCA_MAIZE	4.3e-67	36.50	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays ...	[more]
RCA_ORYSJ	1.2e-66	41.55	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sat...	[more]
RCAA_HORVU	2.3e-65	35.16	Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum...	[more]
RCA2_LARTR	4.4e-64	38.16	Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea ...	[more]

BLAST of ClCG09G003540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6Q9_CUCSA	8.0e-206	79.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430770 PE=4 SV=1	[more]
B9GLS2_POPTR	7.1e-170	72.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07440g PE=4 SV=1	[more]
K4BLT6_SOLLC	2.7e-169	70.07	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0J8BRF1_BETVU	2.5e-167	66.18	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189100 PE=4 S...	[more]
A0A061GE43_THECC	3.6e-166	68.16	P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Theo...	[more]

BLAST of ClCG09G003540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73110.1	4.0e-164	65.57	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT2G39730.1	2.3e-50	49.50	rubisco activase	[more]

BLAST of ClCG09G003540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122568\|ref\|XP_008461213.1\|	2.2e-209	81.65	PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [...	[more]
gi\|449436220\|ref\|XP_004135891.1\|	1.2e-205	79.75	PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [...	[more]
gi\|224057192\|ref\|XP_002299165.1\|	1.0e-169	72.33	hypothetical protein POPTR_0001s07440g [Populus trichocarpa]	[more]
gi\|298204740\|emb\|CBI25238.3\|	5.6e-168	69.73	unnamed protein product [Vitis vinifera]	[more]
gi\|225443213\|ref\|XP_002270825.1\|	5.6e-168	70.18	PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003959	ATPase_AAA_core
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G003540.1	ClCG09G003540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 177..350 score: 3.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 168..230 score: 2.5E-7coord: 269..367 score: 2.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 264..375 score: 3.13E-13coord: 152..225 score: 3.13
None	No IPR available	PANTHER	PTHR32429	FAMILY NOT NAMED	coord: 155..234 score: 1.9E-261coord: 268..471 score: 1.9E-261coord: 1..137 score: 1.9E
None	No IPR available	PANTHER	PTHR32429:SF11	SUBFAMILY NOT NAMED	coord: 155..234 score: 1.9E-261coord: 268..471 score: 1.9E-261coord: 1..137 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G003540	Csa7G430770	Cucumber (Chinese Long) v2	cuwcgB524
ClCG09G003540	MELO3C023491	Melon (DHL92) v3.5.1	mewcgB174
ClCG09G003540	Cla015301	Watermelon (97103) v1	wcgwmB007
ClCG09G003540	Cla97C09G165790	Watermelon (97103) v2	wcgwmbB035
ClCG09G003540	Bhi09G000456	Wax gourd	wcgwgoB064
ClCG09G003540	CSPI07G19850	Wild cucumber (PI 183967)	cpiwcgB553
ClCG09G003540	Cucsa.106140	Cucumber (Gy14) v1	cgywcgB141
ClCG09G003540	CmaCh08G005740	Cucurbita maxima (Rimu)	cmawcgB787
ClCG09G003540	CmoCh08G005670	Cucurbita moschata (Rifu)	cmowcgB786
ClCG09G003540	Lsi02G026400	Bottle gourd (USVL1VR-Ls)	lsiwcgB160
ClCG09G003540	Cp4.1LG17g08580	Cucurbita pepo (Zucchini)	cpewcgB280
ClCG09G003540	CsGy7G018140	Cucumber (Gy14) v2	cgybwcgB484
ClCG09G003540	MELO3C023491.2	Melon (DHL92) v3.6.1	medwcgB168
ClCG09G003540	Carg13487	Silver-seed gourd	carwcgB0442
ClCG09G003540	CsaV3_7G031660	Cucumber (Chinese Long) v3	cucwcgB546

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G003540	Silver-seed gourd	carwcgB0346
ClCG09G003540	Wax gourd	wcgwgoB014
ClCG09G003540	Watermelon (Charleston Gray)	wcgwcgB008
ClCG09G003540	Cucurbita maxima (Rimu)	cmawcgB220
ClCG09G003540	Cucurbita maxima (Rimu)	cmawcgB306
ClCG09G003540	Cucurbita maxima (Rimu)	cmawcgB378
ClCG09G003540	Cucurbita moschata (Rifu)	cmowcgB205
ClCG09G003540	Cucurbita moschata (Rifu)	cmowcgB299
ClCG09G003540	Cucurbita moschata (Rifu)	cmowcgB374
ClCG09G003540	Wild cucumber (PI 183967)	cpiwcgB188
ClCG09G003540	Cucurbita pepo (Zucchini)	cpewcgB126
ClCG09G003540	Cucurbita pepo (Zucchini)	cpewcgB483