ClCG08G017930 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G017930
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-binding protein 48
LocationCG_Chr08 : 29961807 .. 29968064 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCGGAAATCGGAAATCGGAAATCGGAAATCTGAAATCGGATCTCGGAGAAGACGACTTGTTCGGGGATGCCTCGCTTTACAGACGAGCCCCCTGCGGTTCGCGTCTATACGGTTTGCGATGAGTCAAGGTCCACTCCGCCTCTGATATTTCTCCCCCGCAGAATCAGAGATCTATGTGGCTTATATTTACATTGTTGATTGGGAAATTCAACAGGTATTTGATTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTACTTTACTTCTCGTTTCCGTTCTTTTACTCATCTTTACAATGTTTCTTTTCCTTTAGCGTGCCTCAAAGCATTTGTTAATTGCCATACCTTCCATTACATTCTTTTCTAATTTTTCAGAATTTTACTATAGATTCTTTTTGGGGGTGGGAACTGTCGACCCATCCAGCAATTGCATAATAGTTCTTTAGCCGGTGGTGTCTCATCATATGGTTGCTTCATGTTTTCCCTGTTGGATTAGCTTCTGATAATTTATTATACCTCTCTTAAGAATATTTAACACCTCTTATGCCTACATATTTTCCTTTTATCTTATTTTATACTCTGTCAGGTGTACACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTAAAATTTCATTTGGTCACCAATGCCAGGTACTTTGCAGCTTTGCTCTGGTTTTCTTTTGTTTTGAAGAATGCGTTATTGTGCCCCTGAGTTTGAACCAGAACAATTTAACTTTTAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTTCTTGGTAACCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTGTAAGTTAGGCTTTGGCATATATTTATGTTTATGATAGGAAAATGTTGCTTTAGGTACATCTGGAAGGTATCAACTTAAAAATCCAATACATCCACATTATAGTGGCGAAATGGTGTTTCCTTCCAATATTCCACTTTTAAGCATGTTATAACTTTTTTTTATCAGCTGGGAGACCAAGAGGATCTACAGTTAGTTCAACAACCGCAAAGCTTCCAAGTCCTTCTCATTCTCATTATACTCTTGGACAGAAGAACTCTCTTGAAAAGAGGTATAAGCCAAATGAAAATTTGCAGTTCCACCAAACTCGACAAGTTTGTTTAAACATTCTTATTTTTTTCTTTTTTTTTGTTTTTTTTTGTAGGAATTATGGAGATGCAGCACTCATTTCCAATCCACACGTTTCTGAAATAACAAGAGTTTCCTCCGACCAGGTTTGTCTTCATAGCTGTTTTCCTTCCCTTTTTATGTCATATTTGATGTTACAATAATTATTAACAATGCTAGGAAACAATTATTCTGTGTTCTTTTAATTTATGGTTTCTCTTGTACATGATGATGTTTGGACATAGTTCCATTGTGTGCTGCAATATGGGTACAAGGAGTTCATTCCAACAGATTGCACCATTGCTTTGAAAGGCCAATGCAAATGTGATAGGTTGCAAGTACAAAAGTAGGAAGTTAGATGATTTCTCTTTATTTGTTATGTTATTAGGCACAAAATTCCTGAGGCACTGGAGAAGTCTAGACTCTTCTAACCATATGTGAGAGAACTAATTAGGATATATTGGGGATCTTTGTTAGGGGTGTGCACGGTTTGGTTCGGTTCGGTATCTTGCCGAACCATGAACCAAACCGAAGTTATCGGTTCACAATGAAGAAGAATTGATGAAAACCGATTTTTATCAGTTTTGGTTCTTGAACCGAACCAACCTGATTCGGTTCAGGTCGTTTTTTAACCCATGGTTCAGTTAAAGCAAGAGCGAGAGAGTTGGTCGCATTGAAGTTTCGCTCTTCTCGCTCTCTCTCACTTCCTTTTGTCACTCACAATCACTCTTATCTCTCGTGGCTGATTCAGTTCGGTTTTCTGTGGTTTTTTAGGTAGTGAACCGATGGTTCTCCATTCTTCAAAAAGAAAACCGGACCGAACCAGCCAGTTCAGTTGGGTTTGGCGGTTTTTTCCGGTTTTTACACACCCCTAATCTTAGTAGGATAATAGAATGGGGATAGTGTTATTTAATTAGTGGTGTCGTGGTTATAAATAAGGAGAATTGGGCACCTTAGAGGGGTGAAATGGTTTTGGCATTGTCCAGTGTAGAGAGACATAGTCCTCTTGAAAGGCTATAGATATTGTAATTTCTTTTGATATTTCAATATACTCCTATCTTTTTGTTTTCTATTGTGTTCCTTATAAGGAGAGTCACCATCCTCCTGATTTTTCATTTGTTTCCTTGTACTTTCCTTGCCCTTTTACTGGGCCGTTCAAATAACAAAAGTTTTCAATTGTGGGTGCTCCAAGTTTCTCGTTAATGCATAGCTCAACGATTTTCGAGACTTTTGACTTCAAATATGTCTTTTGTATCTTAGGTCAAATTTTTGTGTAAAAAGGACTTAAATAAACAGTGCCATTTATCACTGTCGGAGGTATTCATCAATGTTGACTACCTCTTCAAATTATCTTTAGAGTTATTTTCGATTTCTTGAAATTTCATAGACTATGCTACAAATTGTATCATATCAAGGAGGGCAGTAGGCTCCTGTGTCTGGGTAATGAAAGAAGGTTGAAGGGGTCTACCTTTGGGTAGTGATGTCTTGCATCTTAAACTTGACTCGGACTGAGTAAAAAAAAAAGAAGAAGAAACTTTTGTGGGCTCTTTGGGCTTGAGGATCTTGGAAATCAACTTGGTCTTTTATCCTTGCCACCAGAATGGTTGAAGGTTTAGATGATCGATATGTATATCTAATCTTTAGGGTTTCATTAAAATATATGTTATAATCTTACTTCAGAGAGAGAATAGAAATCAGGTTCACCTTCATATAGTAATTATGACAGAAATGAAGGAAAGAAGTTCTTGCCATTCATTGTTGTCAGACTTCTTGATTGTTAGTCAAACTTTATTTTCTTTTGCTCCTTTATCCTGGAGTCAGGGATTTGGTGATCTCAAGTCAGAGGGGTGGAGAAAGGATCCAACTAACCTTGGAGAATTGAGTGTGATGCAGTGGTGACTTTAGGTTGAACTCAGATTTGAAGATTTGTAGTTTGACTTACTCAGGCAGGTTGCCCCGTGAAATTTCTGGGGTGTACGTGAGTTGGTTTGGACACTCACGAATATCAGAGAAAAAAAAGAGATAGTGCGACTTAATGTCCTCATAGAGCATACATGCATACATATACACATACATGAAGCAAGAGCTTCTTGGTGTGGACAATAGTGCAACTGAATTGCTACTGAGCCGGGGGGTGGAAACTAGGTGTAGGGGCCTTGATTTTCTTTAGATGATGCCAGAGCTTCTTGGTGGCTAAATGGTGTGGAACGTTGTCTGAACTGAAGTGTATAGATGTTTGAGGACGTGGTTTTGCATCCAAGTGTGGAGAAAAGAAATTTTTTTTGGTGATAGGTAAACAAGCTAAAGATGGAGGTGATGGTAACAATATTTTAAGAAAGAAACTGTTGTAATCACTCCACCACCTACATTCAACTCCATTCTTCGTCATTTATGGTCCTTCCTCTTTAGGAACATCCAAGAGCTCTTTATTGGAGTTCAGGAACAATCAAGAGTTTTGATACCAGATTAGTGCAATAAGTTTTATGATTAAGTCAAATTTCTCACAAGGGAAAAGCACCAAAACTCTCTCAAGTCTAAATTCTTTAACTTATAAAAGTTTTCCACGATAAACCAAGTATAGGCATTTAACTTGGATAAAAGATGAGAATAACTTGTAAATCTTGAAACACTAATGGACTAATCAATAGAATTTACTGACTGGCATTAACAATTTGACTAATTATCTTAATCAAAATTAGCTAATTAGATTAGTCATAGAATTATTTGTTTCCTGCACTTGCTATCTCCTTTCTTTCTTGTCGTAGTAGTTGGTTGCCTGTGTAGACATCTAACAAAAGGGCTTACGAATAAATATATTTCTCTCATTATGTTTCTGCGCTAAGTTTTTGAAAGGTAATTTTGTTTTATCACATCTAGGATTATTGGATTGCATTGCACTATCCACTCAAGAAATGCAAACTCACGACATACCAAGTATTCTGATTAACACATTGTTCAACGAGATTTCCAGAAAAATTTAATTCATTGGATTTGAACTTTGTATTACTATCGATTTGAGTACATTATTGTGAGTACACTCCCTTGTACATAATCCTTTAATGCTTTCTCTCGAAAAGTAAACTTTTATCCTTAGACTTGTTGATCTTCTTGAATAATCGACTTTTGGGTTTGATTTTTTGGAGGATCGACCTTTAGACTTGTTGATTTTGTTGACCGGTTTGGATCGACCTCTGGCTTGTTGATCGGCATGGATCGACCTCTGACTTGTTTATCGACTTGGATTGGCCTATGGCTTGTTGAACGACTTGGGTTGGCCTTTTGCTTGTTAATCGACTTGGGTCGGCCTTTTACTTGTTGATCGACTTGGGTCGGCCTTTTGCTTGTTGATCAACTTGGATCGGGCTCTTACTTGTCGATCAACTTGGATCAACCTCTAGCTTGACTTGTTGATTTGTTTGGATCGACCTTCAACTTGTTGATCAGCTCGAATAGACCTCTGACTTGTTGATCGACTTGGATTGGCCTCTGGTCTATTGATCGACCTCTAGCTTGTTGATTTGTTTGGATCGACCTTTGGAGTTTCTAACTTTAAGAGCTCCAATGAGTCTTTTGATCTTTTGAAAGTTTTCTAAGTTGTTGTTTTAGCCTTTAGAGCTTTTGAGAGAATTGTGTTCTTCAGATCTTCAGAACTTTAGAGCTTCATTCTTCTTTTCTACCCTCTAAAATGAAGGGGCAAGTCCTCTATTTATAGAGTTTCTGTGGGCCTTACATGGGTTTGGTCTCAGTATCTTTCTTGGCCCAAAATTCCTATCATGGGCTTGAATTGGGTTGGACTTTGCCAAACGACTTTAATTACTTGGCATGATTCAATTTATAATTTTAGGCCCACTCGAACCTCTAGCCAAATTTATCGATCATGAGCCAGACTTAATCATCGTTGAATTTGATAAGTCTATTGTTGAGATCATATGGCCAGATAGGAGACGTGGCATTTTTAGTTTGTCATATGTTTTCAAATAAAATGGGCTTTTCTTGTGATAATGTAGCAAAATTTCTCATTCAACGCACACTAATTAGTTGGAGTTGCAGTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTAGAGGTTATTAGTCTTGTTTAGAGGAATAATCTTTTTCTGTAGGACCTCGTGGCATGACTTGGTAGATTTGCTTGATTTTCTTCCTTCGATTGTTTAGAAGTACATTCCTCCTTATGAAAGTTTTATTTCCCTTTTGTTAGCTATAGAGCCATGAAGTCTTTGGTTATCTTTAGTGAATTTTGTTTGTCCTATTGATTCTTTTGATGATGTAGATGTCTTAATGATGTTGGTTAGCCCATTATCACTAGGTCAGGTAGAGGTAGGGAAGGTTAAAGGGACTTTGATTCCGATTCCTATAAACTAAATAAGTTCTTGATAATGGCTTTTGAATCTTCTTGTTTCTGGGTGAAGATATGGATTGAATGTTTGCGGACGTTCCTCTTCCTCTATTGTTTATTCTTGTCATTGTTGTTTTTTTTCTTTTTTTTTTTTTTCCTCTCTGGCTGAAAACGTCACTTTTTTCTTGAGTACAGGATTACTTCGCATCTGAATCCATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGGTTATAAAATTTATTTTCATGAGTTATTCTCTACATTTGAGCACATTGTAATTTAAACACTGCTTAGTACCTTGTGTTTTAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAATGCTTGCCAACCTTTATAGAGACGGTTAATAGGTGTCTCAAAGTTGTATCAAAAGCTATTTTGACACATAGCATATACGCAGATTTGCAGTGTACATATTAATTTGCTTGATGTTTTATTTCAAAGGTTAAAATGGAATAGTGCATGTACCAAAGTTCTGTAAGGAGAGTTTTATTGTCATCACCATAACCCATATATTTGCTATCATCATTTC

mRNA sequence

AATCGGAAATCGGAAATCGGAAATCGGAAATCTGAAATCGGATCTCGGAGAAGACGACTTGTTCGGGGATGCCTCGCTTTACAGACGAGCCCCCTGCGGTTCGCGTCTATACGGTTTGCGATGAGTCAAGGTCCACTCCGCCTCTGATATTTCTCCCCCGCAGAATCAGAGATCTATGTGGCTTATATTTACATTGTTGATTGGGAAATTCAACAGGTATTTGATTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTGTACACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTAAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTTCTTGGTAACCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGGAGACCAAGAGGATCTACAGTTAGTTCAACAACCGCAAAGCTTCCAAGTCCTTCTCATTCTCATTATACTCTTGGACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCATTTCCAATCCACACGTTTCTGAAATAACAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCCATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAATGCTTGCCAACCTTTATAGAGACGGTTAATAGGTGTCTCAAAGTTGTATCAAAAGCTATTTTGACACATAGCATATACGCAGATTTGCAGTGTACATATTAATTTGCTTGATGTTTTATTTCAAAGGTTAAAATGGAATAGTGCATGTACCAAAGTTCTGTAAGGAGAGTTTTATTGTCATCACCATAACCCATATATTTGCTATCATCATTTC

Coding sequence (CDS)

ATGTGGCTTATATTTACATTGTTGATTGGGAAATTCAACAGGTATTTGATTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTGTACACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTAAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTTCTTGGTAACCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGGAGACCAAGAGGATCTACAGTTAGTTCAACAACCGCAAAGCTTCCAAGTCCTTCTCATTCTCATTATACTCTTGGACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGATGCAGCACTCATTTCCAATCCACACGTTTCTGAAATAACAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCCATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAA

Protein sequence

MWLIFTLLIGKFNRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLPSPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Homology
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BLAST of ClCG08G017930 vs. Swiss-Prot
Match: RBM48_DANRE (RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYL+V+ VPA+G   +L++LF+ YG +EE  P+D    ++FT+VY ++F  +T+AR AK
Sbjct: 50  SRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQFQKLTSARAAK 109

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREV------LARLDSGRPRGSTVSS 132
           R  DE  F G +L V YAPE+E++ +TK+KL+ RRR V       A+L S +   +T SS
Sbjct: 110 RHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNWASQNAAKLHSQQAEVNTESS 169

Query: 133 TTAKLPSPSHSHYTLGQKNSLEKR 151
           ++    +   +   + QKN  E R
Sbjct: 170 SSTDTRT---AEAPIMQKNPEEAR 190

[Close]
BLAST of ClCG08G017930 vs. Swiss-Prot
Match: RBM48_PONAB (RNA-binding protein 48 OS=Pongo abelii GN=RBM48 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           ++YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +AR AK
Sbjct: 45  SQYLLIQGVPAVGVMKELVERFALYGTIEQYNALDEYPAEDFTEVYLIKFMNLQSARAAK 104

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVL 112
           RK+DE  F G  L V YAPEFE++ +T++KL+VR+  V+
Sbjct: 105 RKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143

[Close]
BLAST of ClCG08G017930 vs. Swiss-Prot
Match: RBM48_HUMAN (RNA-binding protein 48 OS=Homo sapiens GN=RBM48 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 41/99 (41.41%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           ++YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +AR AK
Sbjct: 45  SQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAK 104

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVL 112
           RK+DE  F G  L V YAPEFE++ +T++KL++R+  V+
Sbjct: 105 RKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143

[Close]
BLAST of ClCG08G017930 vs. Swiss-Prot
Match: RBM48_RAT (RNA-binding protein 48 OS=Rattus norvegicus GN=Rbm48 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.1e-17
Identity = 40/95 (42.11%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           ++YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +AR AK
Sbjct: 45  SQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFVKLQSARIAK 104

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRR 108
           +K+DE  F G  L V YAPEFE++ +T++KLE R+
Sbjct: 105 KKMDEQSFFGGLLHVCYAPEFETVEETRKKLEERK 139

[Close]
BLAST of ClCG08G017930 vs. Swiss-Prot
Match: RBM48_BOVIN (RNA-binding protein 48 OS=Bos taurus GN=RBM48 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 7.1e-17
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 15  YLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAKRK 74
           YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +AR AKRK
Sbjct: 47  YLLIQGVPAVGAMKELVERFALYGTIEQYNALDEYPAEDFTEVYLIKFLNLQSARIAKRK 106

Query: 75  LDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAK 131
           +DE  F G  L V YAPEFE++ +T++KL   R   +AR+   +    T     AK
Sbjct: 107 MDEQSFFGGLLHVCYAPEFETVEETRKKLR-ERNAYVARMTKNKDHYMTKKHKDAK 161

[Close]
BLAST of ClCG08G017930 vs. TrEMBL
Match: A0A0A0LQL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348830 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 6.3e-105
Identity = 196/207 (94.69%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVPALGCGDDL KLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVTNARFAK
Sbjct: 52  SRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAK 111

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLP 132
           RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRG+ VSSTTAKL 
Sbjct: 112 RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLT 171

Query: 133 SPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKL 192
           + S SHYTL QKNSLEKRNYGDAALISNPHVS+ITRVSSDQDYFASESMNQTVHLVREKL
Sbjct: 172 NQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKL 231

Query: 193 DKIQSSSEHLQAGPASKKSRMDNRRRI 220
           DKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 232 DKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]
BLAST of ClCG08G017930 vs. TrEMBL
Match: A0A0B0P6M7_GOSAR (RNA-binding 48 OS=Gossypium arboreum GN=F383_04906 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 6.6e-70
Identity = 140/210 (66.67%), Postives = 174/210 (82.86%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVPALGCGDDLLKLF++YG++EEC PMDAE+C++FTDVY++KF LV+N RFAK
Sbjct: 20  SRYLIVRNVPALGCGDDLLKLFANYGDVEECKPMDAEDCEQFTDVYWIKFRLVSNCRFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSS--TTAK 132
           RKLDEFVFLGNRLQVSYAP+FESL DTK+KLE RR+E+LARL+S R +G  V    ++ +
Sbjct: 80  RKLDEFVFLGNRLQVSYAPQFESLDDTKDKLEGRRKEILARLNSQRSKGRPVHRMLSSNE 139

Query: 133 LPS-PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVR 192
            PS P+ SH+   Q N+   R+ GDA   S  + ++ITRVSSD+DYF S+SMNQTV  VR
Sbjct: 140 APSLPASSHHIPNQINN-RLRDVGDAEFRSQSNNAQITRVSSDKDYFPSQSMNQTVKTVR 199

Query: 193 EKLDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           +KL+KIQSS+EHLQAGP  KK+R+DNRRRI
Sbjct: 200 DKLNKIQSSTEHLQAGPTPKKTRVDNRRRI 228

[Close]
BLAST of ClCG08G017930 vs. TrEMBL
Match: A0A067GRL8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026963mg PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.3e-69
Identity = 138/212 (65.09%), Postives = 172/212 (81.13%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVP+LGCGDDLLKLF++YG++EEC PMDAE+CD FTDVYF+KF L +NARFAK
Sbjct: 20  SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTT---- 132
           RKLDEFVFLGNRL+VSYA +FESL DTK+KLE RR+EVLARL+SGR +   + S+     
Sbjct: 80  RKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGE 139

Query: 133 -AKLPSPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHL 192
            + + +P   +    Q  S ++ +  ++  IS+ + S ITRVSSD+DYFAS+SMNQTV L
Sbjct: 140 PSLVTAPLQPNLVSEQITSWQRAS-SESQRISHVNESPITRVSSDKDYFASQSMNQTVRL 199

Query: 193 VREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           VREKL+KI+SS+EHLQAGPASKK R+DNRRRI
Sbjct: 200 VREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230

[Close]
BLAST of ClCG08G017930 vs. TrEMBL
Match: A0A061E6B7_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein OS=Theobroma cacao GN=TCM_010406 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.6e-69
Identity = 134/209 (64.11%), Postives = 174/209 (83.25%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRN+PALGCGD+LLKLF++YG++EEC PMDAE+C++FTDVY++KF L++NARFAK
Sbjct: 20  SRYLIVRNIPALGCGDELLKLFATYGDVEECKPMDAEDCEQFTDVYWIKFRLISNARFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSS--TTAK 132
           RKLDEFVFLGNRLQVSYAP+FESL DTK+KLE RR+EVLARL++ R +G  V       +
Sbjct: 80  RKLDEFVFLGNRLQVSYAPQFESLDDTKDKLEGRRKEVLARLNTPRSKGHPVHHLFPAGE 139

Query: 133 LPSPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVRE 192
            PS + S   + ++ +   R+ GD+   S+ +++ ITRVSSD+DYF S+SMNQTV +VR+
Sbjct: 140 APSLAGSSQQIPKQINSGLRDVGDSEYKSHANIAPITRVSSDKDYFPSQSMNQTVKMVRD 199

Query: 193 KLDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           KL+KIQSS+EHLQA PASKK+R+DNRRRI
Sbjct: 200 KLNKIQSSTEHLQAEPASKKTRVDNRRRI 228

[Close]
BLAST of ClCG08G017930 vs. TrEMBL
Match: V4TIU3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032655mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.1e-68
Identity = 138/212 (65.09%), Postives = 171/212 (80.66%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVP+LGCGDDLLKLF++YG++EEC PMDAE+CD FTDVYF+KF L +NARFAK
Sbjct: 20  SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTT---- 132
           RKLDEFVFLGNRL+VSYA +FESL DTK+KLE RR+EVLARL+SGR +   + S+     
Sbjct: 80  RKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGE 139

Query: 133 -AKLPSPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHL 192
            + + +P   +    Q  S + R + ++  IS+ + S ITRVSSD+DYFAS+SMNQTV L
Sbjct: 140 PSLVTAPLQPNLVSEQITSWQ-RAFSESQRISHVNESPITRVSSDKDYFASQSMNQTVRL 199

Query: 193 VREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           VREKL+KI+SS+EHLQA PASKK R+DNRRRI
Sbjct: 200 VREKLNKIESSTEHLQARPASKKPRIDNRRRI 230

[Close]
BLAST of ClCG08G017930 vs. TAIR10
Match: AT2G27790.1 (AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 217.6 bits (553), Expect = 7.5e-57
Identity = 119/230 (51.74%), Postives = 152/230 (66.09%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RY+IVRNVPALGCGDDL++LF +YG +EEC PMDAE+C EFTDVY++KF L+TNARFAK
Sbjct: 20  SRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITNARFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLP 132
           RKLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLARL+  + + ST   T    P
Sbjct: 80  RKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLARLNPQKEK-STSQVTKLAGP 139

Query: 133 SPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKL 192
           + + +     Q+  +E + +   A         +TRVSSDQ+YFAS SMNQTV  VREKL
Sbjct: 140 ALTQTDNVSSQRREMEYQFHRGNA--------PVTRVSSDQEYFASSSMNQTVKTVREKL 199

Query: 193 DKIQSSSEHLQAGPAS-----------------------KKSRMDNRRRI 220
           +KI+ S    +  P+S                       K++R+DNRRRI
Sbjct: 200 NKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDLKRTRVDNRRRI 240

[Close]
BLAST of ClCG08G017930 vs. TAIR10
Match: AT5G27300.1 (AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 206.1 bits (523), Expect = 2.3e-53
Identity = 116/213 (54.46%), Postives = 146/213 (68.54%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RY+IVRNVPALGCGDDL++LF +YG +EEC PMDAE+C EFTDVY++KF L+TNA    
Sbjct: 376 SRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITNA---- 435

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLP 132
           RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARL+   P  +  +S   KL 
Sbjct: 436 RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQVTKLA 495

Query: 133 SPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKL 192
            P+     L Q ++   R   +     +   + +TRVSS Q+YFAS SMNQ V  VREKL
Sbjct: 496 GPA-----LTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEYFASSSMNQMVKTVREKL 555

Query: 193 DKIQSSSEHLQAGPAS------KKSRMDNRRRI 220
           +KI+ S    +  P+S      K++R+DNRRRI
Sbjct: 556 NKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575

[Close]
BLAST of ClCG08G017930 vs. NCBI nr
Match: gi|449450450|ref|XP_004142975.1| (PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis sativus])

HSP 1 Score: 388.3 bits (996), Expect = 9.1e-105
Identity = 196/207 (94.69%), Postives = 200/207 (96.62%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVPALGCGDDL KLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVTNARFAK
Sbjct: 52  SRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAK 111

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLP 132
           RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRG+ VSSTTAKL 
Sbjct: 112 RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLT 171

Query: 133 SPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKL 192
           + S SHYTL QKNSLEKRNYGDAALISNPHVS+ITRVSSDQDYFASESMNQTVHLVREKL
Sbjct: 172 NQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKL 231

Query: 193 DKIQSSSEHLQAGPASKKSRMDNRRRI 220
           DKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 232 DKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]
BLAST of ClCG08G017930 vs. NCBI nr
Match: gi|778670493|ref|XP_011649485.1| (PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.2e-103
Identity = 196/208 (94.23%), Postives = 200/208 (96.15%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVPALGCGDDL KLFSSYGNLEEC PMDAEECDEFTDVYFVKFHLVTNARFAK
Sbjct: 52  SRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHLVTNARFAK 111

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLP 132
           RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRG+ VSSTTAKL 
Sbjct: 112 RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGTAVSSTTAKLT 171

Query: 133 SPSHSHYTLGQKNSLEK-RNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREK 192
           + S SHYTL QKNSLEK RNYGDAALISNPHVS+ITRVSSDQDYFASESMNQTVHLVREK
Sbjct: 172 NQSRSHYTLKQKNSLEKSRNYGDAALISNPHVSQITRVSSDQDYFASESMNQTVHLVREK 231

Query: 193 LDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           LDKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 232 LDKIQSSSEHLQAGPASKKSRMDNRRRI 259

[Close]
BLAST of ClCG08G017930 vs. NCBI nr
Match: gi|659087227|ref|XP_008444339.1| (PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo])

HSP 1 Score: 377.5 bits (968), Expect = 1.6e-101
Identity = 190/207 (91.79%), Postives = 198/207 (95.65%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVPALGCGD L KLFSSYGNLEEC PMDAEECDEFTDVYFVKFH VTNARFAK
Sbjct: 20  SRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSSTTAKLP 132
           RKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLARLDSGRPRGS VSSTTAKL 
Sbjct: 80  RKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLT 139

Query: 133 SPSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVREKL 192
           +PS S+YTL QKNSLE RNYGDAALIS+PHVS++TRVSSDQDYFASESMNQTVHLVREKL
Sbjct: 140 NPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKL 199

Query: 193 DKIQSSSEHLQAGPASKKSRMDNRRRI 220
           DKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 200 DKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]
BLAST of ClCG08G017930 vs. NCBI nr
Match: gi|659087235|ref|XP_008444344.1| (PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 8.8e-84
Identity = 161/174 (92.53%), Postives = 168/174 (96.55%), Query Frame = 1 

Query: 46  MDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV 105
           MDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEV
Sbjct: 1   MDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEV 60

Query: 106 RRREVLARLDSGRPRGSTVSSTTAKLPSPSHSHYTLGQKNSLEKRNYGDAALISNPHVSE 165
           RRREVLARLDSGRPRGS VSSTTAKL +PS S+YTL QKNSLE RNYGDAALIS+PHVS+
Sbjct: 61  RRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQ 120

Query: 166 ITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           +TRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 121 MTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 174

[Close]
BLAST of ClCG08G017930 vs. NCBI nr
Match: gi|728842905|gb|KHG22348.1| (RNA-binding 48 [Gossypium arboreum])

HSP 1 Score: 271.9 bits (694), Expect = 9.5e-70
Identity = 140/210 (66.67%), Postives = 174/210 (82.86%), Query Frame = 1 

Query: 13  NRYLIVRNVPALGCGDDLLKLFSSYGNLEECTPMDAEECDEFTDVYFVKFHLVTNARFAK 72
           +RYLIVRNVPALGCGDDLLKLF++YG++EEC PMDAE+C++FTDVY++KF LV+N RFAK
Sbjct: 20  SRYLIVRNVPALGCGDDLLKLFANYGDVEECKPMDAEDCEQFTDVYWIKFRLVSNCRFAK 79

Query: 73  RKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSTVSS--TTAK 132
           RKLDEFVFLGNRLQVSYAP+FESL DTK+KLE RR+E+LARL+S R +G  V    ++ +
Sbjct: 80  RKLDEFVFLGNRLQVSYAPQFESLDDTKDKLEGRRKEILARLNSQRSKGRPVHRMLSSNE 139

Query: 133 LPS-PSHSHYTLGQKNSLEKRNYGDAALISNPHVSEITRVSSDQDYFASESMNQTVHLVR 192
            PS P+ SH+   Q N+   R+ GDA   S  + ++ITRVSSD+DYF S+SMNQTV  VR
Sbjct: 140 APSLPASSHHIPNQINN-RLRDVGDAEFRSQSNNAQITRVSSDKDYFPSQSMNQTVKTVR 199

Query: 193 EKLDKIQSSSEHLQAGPASKKSRMDNRRRI 220
           +KL+KIQSS+EHLQAGP  KK+R+DNRRRI
Sbjct: 200 DKLNKIQSSTEHLQAGPTPKKTRVDNRRRI 228

The following BLAST results are available for this feature:
BLAST of ClCG08G017930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBM48_DANRE1.8e-2040.28RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1[more]
RBM48_PONAB1.1e-1742.42RNA-binding protein 48 OS=Pongo abelii GN=RBM48 PE=2 SV=1[more]
RBM48_HUMAN4.2e-1741.41RNA-binding protein 48 OS=Homo sapiens GN=RBM48 PE=2 SV=1[more]
RBM48_RAT7.1e-1742.11RNA-binding protein 48 OS=Rattus norvegicus GN=Rbm48 PE=2 SV=1[more]
RBM48_BOVIN7.1e-1738.79RNA-binding protein 48 OS=Bos taurus GN=RBM48 PE=2 SV=2[more]
BLAST of ClCG08G017930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQL2_CUCSA6.3e-10594.69Uncharacterized protein OS=Cucumis sativus GN=Csa_2G348830 PE=4 SV=1[more]
A0A0B0P6M7_GOSAR6.6e-7066.67RNA-binding 48 OS=Gossypium arboreum GN=F383_04906 PE=4 SV=1[more]
A0A067GRL8_CITSI7.3e-6965.09Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026963mg PE=4 SV=1[more]
A0A061E6B7_THECC9.6e-6964.11RNA-binding (RRM/RBD/RNP motifs) family protein OS=Theobroma cacao GN=TCM_010406... [more]
V4TIU3_9ROSI2.1e-6865.09Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032655mg PE=4 SV=1[more]
BLAST of ClCG08G017930 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27790.17.5e-5751.74 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G27300.12.3e-5354.46 pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of ClCG08G017930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450450|ref|XP_004142975.1|9.1e-10594.69PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis sativus][more]
gi|778670493|ref|XP_011649485.1|2.2e-10394.23PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis sativus][more]
gi|659087227|ref|XP_008444339.1|1.6e-10191.79PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo][more]
gi|659087235|ref|XP_008444344.1|8.8e-8492.53PREDICTED: RNA-binding protein 48 isoform X2 [Cucumis melo][more]
gi|728842905|gb|KHG22348.1|9.5e-7066.67RNA-binding 48 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0022900 electron transport chain
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0015992 proton transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0045275 respiratory chain complex III
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respiratory chain
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G017930.1ClCG08G017930.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 16..85
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 14..92
score: 9
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 14..92
score: 2.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 11..94
score: 2.15
NoneNo IPR availablePANTHERPTHR20957UNCHARACTERIZEDcoord: 14..219
score: 1.2
NoneNo IPR availablePANTHERPTHR20957:SF0RNA-BINDING PROTEIN 48coord: 14..219
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G017930Csa2G348830Cucumber (Chinese Long) v2cuwcgB169
ClCG08G017930MELO3C010671Melon (DHL92) v3.5.1mewcgB295
ClCG08G017930Cla000804Watermelon (97103) v1wcgwmB397
ClCG08G017930Cla97C08G161670Watermelon (97103) v2wcgwmbB336
ClCG08G017930Bhi04G000540Wax gourdwcgwgoB631
ClCG08G017930CSPI02G17100Wild cucumber (PI 183967)cpiwcgB172
ClCG08G017930Cucsa.394280Cucumber (Gy14) v1cgywcgB674
ClCG08G017930CmaCh05G000190Cucurbita maxima (Rimu)cmawcgB712
ClCG08G017930CmoCh05G000240Cucurbita moschata (Rifu)cmowcgB716
ClCG08G017930Lsi08G016720Bottle gourd (USVL1VR-Ls)lsiwcgB438
ClCG08G017930Cp4.1LG11g00770Cucurbita pepo (Zucchini)cpewcgB125
ClCG08G017930MELO3C010671.2Melon (DHL92) v3.6.1medwcgB288
ClCG08G017930Carg21817Silver-seed gourdcarwcgB0490
ClCG08G017930CsaV3_2G024710Cucumber (Chinese Long) v3cucwcgB176
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G017930Cucumber (Gy14) v1cgywcgB129
ClCG08G017930Cucumber (Gy14) v1cgywcgB369
ClCG08G017930Cucumber (Gy14) v1cgywcgB501
ClCG08G017930Cucurbita maxima (Rimu)cmawcgB173
ClCG08G017930Cucurbita maxima (Rimu)cmawcgB372
ClCG08G017930Cucurbita maxima (Rimu)cmawcgB374
ClCG08G017930Cucurbita maxima (Rimu)cmawcgB681
ClCG08G017930Cucurbita moschata (Rifu)cmowcgB164
ClCG08G017930Cucurbita moschata (Rifu)cmowcgB370
ClCG08G017930Wild cucumber (PI 183967)cpiwcgB093
ClCG08G017930Wild cucumber (PI 183967)cpiwcgB094
ClCG08G017930Wild cucumber (PI 183967)cpiwcgB429
ClCG08G017930Cucumber (Chinese Long) v2cuwcgB089
ClCG08G017930Cucumber (Chinese Long) v2cuwcgB411
ClCG08G017930Melon (DHL92) v3.5.1mewcgB073
ClCG08G017930Melon (DHL92) v3.5.1mewcgB161
ClCG08G017930Melon (DHL92) v3.5.1mewcgB265
ClCG08G017930Watermelon (97103) v1wcgwmB416
ClCG08G017930Watermelon (97103) v1wcgwmB428
ClCG08G017930Cucurbita pepo (Zucchini)cpewcgB054
ClCG08G017930Cucurbita pepo (Zucchini)cpewcgB418
ClCG08G017930Cucurbita pepo (Zucchini)cpewcgB754
ClCG08G017930Bottle gourd (USVL1VR-Ls)lsiwcgB308
ClCG08G017930Cucumber (Gy14) v2cgybwcgB086
ClCG08G017930Cucumber (Gy14) v2cgybwcgB088
ClCG08G017930Cucumber (Gy14) v2cgybwcgB155
ClCG08G017930Cucumber (Gy14) v2cgybwcgB377
ClCG08G017930Melon (DHL92) v3.6.1medwcgB070
ClCG08G017930Melon (DHL92) v3.6.1medwcgB154
ClCG08G017930Melon (DHL92) v3.6.1medwcgB256
ClCG08G017930Silver-seed gourdcarwcgB0484
ClCG08G017930Silver-seed gourdcarwcgB0605
ClCG08G017930Silver-seed gourdcarwcgB0702
ClCG08G017930Cucumber (Chinese Long) v3cucwcgB100
ClCG08G017930Cucumber (Chinese Long) v3cucwcgB102
ClCG08G017930Cucumber (Chinese Long) v3cucwcgB431
ClCG08G017930Watermelon (97103) v2wcgwmbB330
ClCG08G017930Watermelon (97103) v2wcgwmbB334
ClCG08G017930Wax gourdwcgwgoB644
ClCG08G017930Wax gourdwcgwgoB648
ClCG08G017930Watermelon (Charleston Gray)wcgwcgB171
ClCG08G017930Watermelon (Charleston Gray)wcgwcgB176