ClCG08G016050 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G016050
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 28490673 .. 28491216 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGAGAAGACCAAGAGACGATAACAGACAATTCACAACATCAGAGATTCCTTCACGAGCTTCAACAGCAGAACTTCAGCAACAGTTAAGGTGAACAGTAAACAACTACATGTGATATATTTATGAAAAACAATATAACAAGCAAGAAAAAAAAACTCGATATACAGATCTCGATCTAGAAAGGAATATGAGAAGACCAACAGACAAGTCTGACTGACTGACTGAAGTCCGTGGAATCGGAAATTAATCAAATAGTGACGGATCAGATCCGAGAAATGGCACAAAGAAAGACGAAAAAGGATCGGTTTTACCAAAGACGAACCGTTAAGAAAGTGAGCGTATGAAGAACTAACGGATCTGAGGGTGAAATTAAGAGTGATCGAGAGAGAAATGATGGATCTAAAAGAAAGAAAGAGGAGTATACCTTGGAGAAAATTAATGGCCGCGAGGGAATTTGGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAAGAAAGCGAAAATTTCAGGCGGAGATAGGGTTTCGCGCTTGAGCTGA

mRNA sequence

ATGAATATGAGAAGACCAAGAGACGATAACAGACAATTCACAACATCAGAGATTCCTTCACGAGCTTCAACAGCAGAACTTCAGCAACAGTTAAGAACTAACGGATCTGAGGGTGAAATTAAGAGTGATCGAGAGAGAAATGATGGATCTAAAAGAAAGAAAGAGGAGTATACCTTGGAGAAAATTAATGGCCGCGAGGGAATTTGGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAAGAAAGCGAAAATTTCAGGCGGAGATAGGGTTTCGCGCTTGAGCTGA

Coding sequence (CDS)

ATGAATATGAGAAGACCAAGAGACGATAACAGACAATTCACAACATCAGAGATTCCTTCACGAGCTTCAACAGCAGAACTTCAGCAACAGTTAAGAACTAACGGATCTGAGGGTGAAATTAAGAGTGATCGAGAGAGAAATGATGGATCTAAAAGAAAGAAAGAGGAGTATACCTTGGAGAAAATTAATGGCCGCGAGGGAATTTGGGAGGAGTCCGCCGCGGCTACAATGTCGCGTTGGAAGAAAGCGAAAATTTCAGGCGGAGATAGGGTTTCGCGCTTGAGCTGA

Protein sequence

MNMRRPRDDNRQFTTSEIPSRASTAELQQQLRTNGSEGEIKSDRERNDGSKRKKEEYTLEKINGREGIWEESAAATMSRWKKAKISGGDRVSRLS
Homology
[Close]
BLAST of ClCG08G016050 vs. TrEMBL
Match: A0A0A0LL84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356670 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-06
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1 

Query: 39 EIKSDRERNDGSKRKKEEYT--LEKINGREGIWEESAAATMSRWKKAKISGGDRVSR 94
          +I   R R     R  E  T   EK +GREGI EESAAATMSRW KA ISGG+R+SR
Sbjct: 12 QIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANISGGERLSR 68

[Close]
BLAST of ClCG08G016050 vs. NCBI nr
Match: gi|700207374|gb|KGN62493.1| (hypothetical protein Csa_2G356670 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1 

Query: 39 EIKSDRERNDGSKRKKEEYT--LEKINGREGIWEESAAATMSRWKKAKISGGDRVSR 94
          +I   R R     R  E  T   EK +GREGI EESAAATMSRW KA ISGG+R+SR
Sbjct: 12 QIPEKRRRKTNKDRFYERRTGKKEKTDGREGILEESAAATMSRWNKANISGGERLSR 68

The following BLAST results are available for this feature:
BLAST of ClCG08G016050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL84_CUCSA3.8e-0657.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G356670 PE=4 SV=1[more]
BLAST of ClCG08G016050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207374|gb|KGN62493.1|5.5e-0657.89hypothetical protein Csa_2G356670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G016050.1ClCG08G016050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G016050CsaV3_2G026580Cucumber (Chinese Long) v3cucwcgB176
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G016050Bottle gourd (USVL1VR-Ls)lsiwcgB153
ClCG08G016050Bottle gourd (USVL1VR-Ls)lsiwcgB305
ClCG08G016050Bottle gourd (USVL1VR-Ls)lsiwcgB438
ClCG08G016050Cucumber (Gy14) v2cgybwcgB155
ClCG08G016050Cucumber (Gy14) v2cgybwcgB309
ClCG08G016050Cucumber (Gy14) v2cgybwcgB461
ClCG08G016050Cucumber (Gy14) v2cgybwcgB529
ClCG08G016050Melon (DHL92) v3.6.1medwcgB214
ClCG08G016050Melon (DHL92) v3.6.1medwcgB288
ClCG08G016050Melon (DHL92) v3.6.1medwcgB496
ClCG08G016050Melon (DHL92) v3.6.1medwcgB542
ClCG08G016050Silver-seed gourdcarwcgB0076
ClCG08G016050Silver-seed gourdcarwcgB0178
ClCG08G016050Silver-seed gourdcarwcgB0403
ClCG08G016050Silver-seed gourdcarwcgB0752
ClCG08G016050Cucumber (Chinese Long) v3cucwcgB350
ClCG08G016050Cucumber (Chinese Long) v3cucwcgB521
ClCG08G016050Watermelon (97103) v2wcgwmbB314
ClCG08G016050Watermelon (97103) v2wcgwmbB327
ClCG08G016050Watermelon (97103) v2wcgwmbB336
ClCG08G016050Wax gourdwcgwgoB612
ClCG08G016050Wax gourdwcgwgoB640
ClCG08G016050Wax gourdwcgwgoB656
ClCG08G016050Watermelon (Charleston Gray)wcgwcgB112
ClCG08G016050Watermelon (Charleston Gray)wcgwcgB138
ClCG08G016050Watermelon (Charleston Gray)wcgwcgB166
ClCG08G016050Cucumber (Gy14) v1cgywcgB138
ClCG08G016050Cucumber (Gy14) v1cgywcgB399
ClCG08G016050Cucumber (Gy14) v1cgywcgB603
ClCG08G016050Cucumber (Gy14) v1cgywcgB674
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB029
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB140
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB169
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB434
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB603
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB712
ClCG08G016050Cucurbita maxima (Rimu)cmawcgB776
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB023
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB123
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB161
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB435
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB602
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB716
ClCG08G016050Cucurbita moschata (Rifu)cmowcgB777
ClCG08G016050Wild cucumber (PI 183967)cpiwcgB172
ClCG08G016050Wild cucumber (PI 183967)cpiwcgB350
ClCG08G016050Wild cucumber (PI 183967)cpiwcgB529
ClCG08G016050Wild cucumber (PI 183967)cpiwcgB601
ClCG08G016050Cucumber (Chinese Long) v2cuwcgB169
ClCG08G016050Cucumber (Chinese Long) v2cuwcgB332
ClCG08G016050Cucumber (Chinese Long) v2cuwcgB503
ClCG08G016050Cucumber (Chinese Long) v2cuwcgB568
ClCG08G016050Melon (DHL92) v3.5.1mewcgB295
ClCG08G016050Melon (DHL92) v3.5.1mewcgB223
ClCG08G016050Melon (DHL92) v3.5.1mewcgB502
ClCG08G016050Melon (DHL92) v3.5.1mewcgB544
ClCG08G016050Watermelon (97103) v1wcgwmB400
ClCG08G016050Watermelon (97103) v1wcgwmB412
ClCG08G016050Watermelon (97103) v1wcgwmB418
ClCG08G016050Watermelon (97103) v1wcgwmB421
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB086
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB125
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB446
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB528
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB624
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB708
ClCG08G016050Cucurbita pepo (Zucchini)cpewcgB748