ClCG08G015650 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G015650
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA binding protein
Location	CG_Chr08 : 28130909 .. 28134580 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCAAATGGTTCATTCTCTCATGGAAACCATTCTGATGCAGATTATACAAATACAACTATGAGTTGGATTGCTTCATTTTGCCTTTGTAATATCAATCGTTCTTTCTCTTGCTAATTATCTTTTTTTTTTTTCCTTTCTTTCTTTCTTTCTTTCTCGTCTTGGTTTTAGGGGATGTGTGTAAAGATATTCATTGGAGGGCTTGATCCAAATGTTACTAATGATGATCTTAAGCAGCTATTTTCTCAACATGGAGACATAGTATCTGTTAAATTACCAGTTGGAAAAGGTTGTGGTTTTATCCAATTTGCAAACAGGTAAATTTCATGTGCCATTTTTCGTTTGACCGTATATGAAGATTGAGTTTTTAGTTTCTTTGTATGTTTCAATTACTCAACTATTCTTTGTTCTATTGTGTAGATAGAATGCATTGCAGAAATTAAATGGAACTATGATCAGCAAGCAAACAATGCATCTTTCTTGGGGACGTAGTCCGACAAATAAGCAGGTAATTTTCTTTTAGAAACATACAACTACCTCATTTTTCAGGTTAGGAGATACTTATGGAATAACGATTATTCCCCCCACCCCCACACAAGGATTCTACTCTTGCCTGGTGTATGCACTCTTCTTAGTTCTTACTTACATGGTAGTTAGCAAATATATCATTCCTTTTTTATGTGTCTGCTCTGTTTTATAGTTATATAAGAAATGTAATTTGAACTACAACAATCATGCAATGTAGTTTGAAGGGACAACTGGAAATATCCCTGTCAAATTGTAATACCAGGATTTACTAAATAGTATATATAAAATATTATTACATTCAACATTTAGGAAGGGTATAAAAAGTCCTTGTTGTGAGAACCCACGGAATATTTACCATATGGAATATCCAGAGGAGACAATGGAATGAGGGAAGGAAATGGAAGGAAATATGCTTAGAACTTCCTTGGTGAACGATGATGGTTTTATTGAGTAAGTAGTGAATATCTTATCTCTCGGTGATTTCTAAATACTTGAAATGTTGGTATAACTAGCTGATTAAATTGATGTGTGTATATGGAGTATCTTATAACTAGTACTTTTTTATTGACAGTACCGAGCTGATTATGGTAACCACTGGAGTGGAGCCTACTATGAGGACAAATGTATGGCAAATATGGATACGCTCTGTCGTTACCTCATGATCCACCAACCATGTATGCAGCAGCAGGGCACCCATCAACAACAAGTGAACTGATGATTGGAAGGCAGAGGAAACAGTGTTTTAGTTCTTATACAAGGCAATTGTCCCGCGGGAAGCCTGGAGTGAGCAAATCTTCTACGTTTCTCTATAGGATCTCACTATCTATAATGGGCAAAGTTGCTTCATTTTTTAATGTTCAACTTTGTTCTCAAGGTTTGCTATAATTCCCTCCATCCGTGGAGCGGAACCGAATTTTGATGGACCTGAGTTATGTAGAATATGATTTACTAACTATTCGTTTGAGACTGCGATAACTAATAAGGGACTTAAATGTTTATTAGAATATATAATGTTATGGCTTATAGCTTTAGCTAATTTATTTTGCTTCTACACTTGCTTTTCAACATTAGCATGAATTTGAAACTACCATTGGTAAGATCTTAACTGTTGTTTTGTCCTTGTCCTGTTCTTTTGCTTAGTTTTGGGAGTACTTGAAATGTCTATTTGACCAAACAACTCATGAGAGAATCGAAAGCAATGTCCCTTGATGGATTTTGATTGGTTCCCACAAGTTATGGGAATTATCAAATGGTTTTCAGTTACTTATTTGTTTTTTGTTTCAAGTCTGTTTGGAATGATTTTTGTTTTCAAAACTTTTTGTTTCCTTCACTCTGTGGTTAAGTGTTGGATTATTTGATGTGTATATGTTTATTTAGAAGGGTGAGATAGTGTTTGCTGCTTTGACATCCTCTATTAATTGTACATGTGAAAGAGGTTTTTCCAAGTAGTATTTTAGGATAAAAAACTACATGTTTAATGCCCAAAACTGCGACATCTGTGGTAAAGATGGAAGTTTATTTCTAGCATATATTATGATGGTGCTTGACGGATTGTTTGGATGCTTAGTCATAGGCAAAATAGTTTTAAATCTGCTTTATCGTAGGCAAGCTAGCTTTAAATCAGGATAAGAATCCATTTTTATACCATAAACTTTGTATGTTGTACTTATTAAAACTTTAAATTACTAATTGAGTAAAAGTTTTTGTAGGGAATTAATTTAGATCATTAGTTAGTGTTATAAGCGTTAGATTGATACTTTAATTCACTGTGCCAAATTTATGGCTATGCATCGGTTTTTTCCCTTTTAAAAGTAAATCTAGTGTGATTTGATGATTTGTGACTGTTCGATTGATGTGCAAGTATGGTAAGTCTGTGAAATACATATATATTTAAAGAAACAGTAAAGTGAGTTCCATTGAGTAATTTTAGAAAAAATTTAGGTAAAAATAGTACTTAAAAAAAAGGGGAAAAATGTTTTTTTTTTTTTTTTTTTTTGTCTTTATTTGAATGTTAGAGTCTGCAGCACGGAAAAGATAACGAAAAAAGTGAATGAAGTGTGTTGGGTTTTTTTTACTGCATTATGAAAAAGTGAAGTGACATTTTTTTCCCTGTCACTTTTCCTGTAAAGTTTCGATCAGAATTTTAAAGAAAAAGTGACAGAGAGGCCGATTTATTCCCGATAAGTTAAAGCTTACAGGAAAGGAATTGAGTTCCCTGTCACTTGAATTCCTAATAAGTGAGTTCATCTTTGTTCCCTTCCTTTCTAACCTTCCTATTTTCCTATAAAGGTATTTTTATTTAAGATTCTAAATTAAACTAATAATTCATGTTAGGTTTCTGTCTATTTTTCTGGTGAAAATGATACTAGAAAAAACAATTTTTTTTCTAATTAATAATTCAAACTTACGTTAAAAAAATAATTATTAAAAAAAATGGTAGAATGTCGTCAAAATTTATCTTTTTCGTTCAGTTTGACTGTTCTGACCGTGACAGAGAGTGTAACATTCAAATAATGACAAGAAAAATTATCCATTTTACCTAATTTTTTTCCAAACTACCTCTTTTCCTTAATTTTTTTATTCTTAAAAGTGCTCTTTTTCCTAATTAACCCAATAAAGTGTGTTTATCTCTCTATATTGATAAATAATAAGTAATAGAATTGTGTTAGCAACTGTTTCTAGTTATTTGTTATTATTATTATTTATTGGACATAAAAACATTTTTTTTTGGTAACTATTTCTTGCGTTTGTTCTCTAAAACTAAAAAAATTAAATTAAAAATAGAGTTTTCTTTTTTTAAAGAAAAAAAATCAAATATGAACATTTTAGTGTCATATTTACTTTTTTTATATTTAAAAAGTATCGTGTACTAAGTCAAGAATAAGGGGATGATATTTTATTTATCTTCGGGAAAACTAAAAGTAGGAATAAAAAACGACAATCCTGGGATCTATTTTGTAACCTTCCTTTCTTTTTCTTTTTCTCTTTTTTTTTTTTGTTCTATTTTTTCTTATCTCTCTCTCTTCTTTTTTTTTTTTTTTCCTTCTTGTTTCTCTTTTTTAATAAAGAAAATAGAGTTATGTTTGGATTTTTTTTTTTTTTTAAAGAAATGTTTTGGCAACTTTTTCTTGAATCCGTGTGA

mRNA sequence

ATGCATCAAATGAATGCATTGCAGAAATTAAATGGAACTATGATCAGCAAGCAAACAATGCATCTTTCTTGGGGACGTAGTCCGACAAATAAGCAGTACCGAGCTGATTATGGTAACCACTGGAGTGGAGCCTACTATGAGGACAAATGTATGGCAAATATGGATACGCTCTGTCGTTACCTCATGATCCACCAACCATGTATGCAGCAGCAGGGCACCCATCAACAACAAAAGGGTGAGATAGTGTTTGCTGCTTTGACATCCTCTATTAATTGTACATGTGAAAGAGAAATGTTTTGGCAACTTTTTCTTGAATCCGTGTGA

Coding sequence (CDS)

ATGCATCAAATGAATGCATTGCAGAAATTAAATGGAACTATGATCAGCAAGCAAACAATGCATCTTTCTTGGGGACGTAGTCCGACAAATAAGCAGTACCGAGCTGATTATGGTAACCACTGGAGTGGAGCCTACTATGAGGACAAATGTATGGCAAATATGGATACGCTCTGTCGTTACCTCATGATCCACCAACCATGTATGCAGCAGCAGGGCACCCATCAACAACAAAAGGGTGAGATAGTGTTTGCTGCTTTGACATCCTCTATTAATTGTACATGTGAAAGAGAAATGTTTTGGCAACTTTTTCTTGAATCCGTGTGA

Protein sequence

MHQMNALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYYEDKCMANMDTLCRYLMIHQPCMQQQGTHQQQKGEIVFAALTSSINCTCEREMFWQLFLESV

Homology

[Close]

BLAST of ClCG08G015650 vs. Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           AL+KLNGT+I KQT+ LSWGR+P NKQ R  YGN W   YY
Sbjct: 357 ALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 397

[Close]

BLAST of ClCG08G015650 vs. Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           AL+KLNGT+I KQT+ LSWGR+P NKQ R  YGN W   YY
Sbjct: 355 ALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 395

[Close]

BLAST of ClCG08G015650 vs. Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-08
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAY 46
           A+QKL+G +I KQ + LSWGRSP NKQ R D G+ W+G Y
Sbjct: 346 AIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGY 385

[Close]

BLAST of ClCG08G015650 vs. Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAY 46
           A+  LNGT+I K T+ LSWGRSP NKQ+R+D GN W+G Y
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGY 416

[Close]

BLAST of ClCG08G015650 vs. Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-07
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 5   NALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAY 46
           +A++ LNGT+I K T+ LSWGRSP NKQ+R D G  W+G Y
Sbjct: 371 DAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY 410

[Close]

BLAST of ClCG08G015650 vs. TrEMBL
Match: A0A0A0LP64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360590 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGRSPTNKQYR DYGNHWSGAYY
Sbjct: 349 ALQKLNGTVIGKQTVRLSWGRSPTNKQYRGDYGNHWSGAYY 389

[Close]

BLAST of ClCG08G015650 vs. TrEMBL
Match: A0A0B0PHI7_GOSAR (Polyadenylate-binding RBP47 OS=Gossypium arboreum GN=F383_06246 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGTMI KQT+ LSWGR+PTNKQ+RADYGN W GAYY
Sbjct: 303 ALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYY 343

[Close]

BLAST of ClCG08G015650 vs. TrEMBL
Match: A0A0D2QK31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209600 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-12
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGR+PTNKQ+RADYGN W GAYY
Sbjct: 353 ALQKLNGTIIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYY 393

[Close]

BLAST of ClCG08G015650 vs. TrEMBL
Match: A0A061FJ83_THECC (RNA-binding protein 47C isoform 1 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGR+P NKQ+RADYGN WSGAYY
Sbjct: 353 ALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYY 393

[Close]

BLAST of ClCG08G015650 vs. TrEMBL
Match: A0A061FBZ6_THECC (RNA-binding protein 47C isoform 3 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGR+P NKQ+RADYGN WSGAYY
Sbjct: 354 ALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYY 394

[Close]

BLAST of ClCG08G015650 vs. TAIR10
Match: AT1G47500.1 (AT1G47500.1 RNA-binding protein 47C')

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           AL+KLNGT+I KQT+ LSWGR+P NKQ R  YGN W   YY
Sbjct: 357 ALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 397

[Close]

BLAST of ClCG08G015650 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           AL+KLNGT+I KQT+ LSWGR+P NKQ R  YGN W   YY
Sbjct: 355 ALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYY 395

[Close]

BLAST of ClCG08G015650 vs. TAIR10
Match: AT1G49600.1 (AT1G49600.1 RNA-binding protein 47A)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAY 46
           A+  LNGT+I K T+ LSWGRSP NKQ+R+D GN W+G Y
Sbjct: 378 AIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGY 416

[Close]

BLAST of ClCG08G015650 vs. TAIR10
Match: AT3G19130.1 (AT3G19130.1 RNA-binding protein 47B)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-08
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 5   NALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAY 46
           +A++ LNGT+I K T+ LSWGRSP NKQ+R D G  W+G Y
Sbjct: 371 DAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY 410

[Close]

BLAST of ClCG08G015650 vs. NCBI nr
Match: gi|659087804|ref|XP_008444645.1| (PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGRSPTNKQYRADYGNHWSGAYY
Sbjct: 349 ALQKLNGTVIGKQTVRLSWGRSPTNKQYRADYGNHWSGAYY 389

[Close]

BLAST of ClCG08G015650 vs. NCBI nr
Match: gi|449470045|ref|XP_004152729.1| (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGRSPTNKQYR DYGNHWSGAYY
Sbjct: 349 ALQKLNGTVIGKQTVRLSWGRSPTNKQYRGDYGNHWSGAYY 389

[Close]

BLAST of ClCG08G015650 vs. NCBI nr
Match: gi|728844924|gb|KHG24367.1| (Polyadenylate-binding RBP47 [Gossypium arboreum])

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGTMI KQT+ LSWGR+PTNKQ+RADYGN W GAYY
Sbjct: 303 ALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYY 343

[Close]

BLAST of ClCG08G015650 vs. NCBI nr
Match: gi|823224644|ref|XP_012445095.1| (PREDICTED: polyadenylate-binding protein RBP47-like [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 9.8e-12
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGR+PTNKQ+RADYGN W GAYY
Sbjct: 353 ALQKLNGTIIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYY 393

[Close]

BLAST of ClCG08G015650 vs. NCBI nr
Match: gi|590592611|ref|XP_007017329.1| (RNA-binding protein 47C isoform 1 [Theobroma cacao])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 6   ALQKLNGTMISKQTMHLSWGRSPTNKQYRADYGNHWSGAYY 47
           ALQKLNGT+I KQT+ LSWGR+P NKQ+RADYGN WSGAYY
Sbjct: 353 ALQKLNGTVIGKQTVRLSWGRNPANKQFRADYGNQWSGAYY 393

The following BLAST results are available for this feature:

BLAST of ClCG08G015650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R47CP_ARATH	3.5e-09	65.85	Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV...	[more]
RB47C_ARATH	3.5e-09	65.85	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1	[more]
RBP47_NICPL	5.0e-08	60.00	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 S...	[more]
RB47A_ARATH	1.9e-07	62.50	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1	[more]
RB47B_ARATH	3.3e-07	58.54	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1	[more]

BLAST of ClCG08G015650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP64_CUCSA	1.2e-13	87.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360590 PE=4 SV=1	[more]
A0A0B0PHI7_GOSAR	2.4e-12	82.93	Polyadenylate-binding RBP47 OS=Gossypium arboreum GN=F383_06246 PE=4 SV=1	[more]
A0A0D2QK31_GOSRA	6.9e-12	80.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209600 PE=4 SV=1	[more]
A0A061FJ83_THECC	8.9e-12	80.49	RNA-binding protein 47C isoform 1 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1	[more]
A0A061FBZ6_THECC	8.9e-12	80.49	RNA-binding protein 47C isoform 3 OS=Theobroma cacao GN=TCM_033896 PE=4 SV=1	[more]

BLAST of ClCG08G015650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47500.1	2.0e-10	65.85	RNA-binding protein 47C'	[more]
AT1G47490.1	2.0e-10	65.85	RNA-binding protein 47C	[more]
AT1G49600.1	1.1e-08	62.50	RNA-binding protein 47A	[more]
AT3G19130.1	1.8e-08	58.54	RNA-binding protein 47B	[more]

BLAST of ClCG08G015650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087804\|ref\|XP_008444645.1\|	6.2e-14	90.24	PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis melo]	[more]
gi\|449470045\|ref\|XP_004152729.1\|	1.8e-13	87.80	PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus]	[more]
gi\|728844924\|gb\|KHG24367.1\|	3.4e-12	82.93	Polyadenylate-binding RBP47 [Gossypium arboreum]	[more]
gi\|823224644\|ref\|XP_012445095.1\|	9.8e-12	80.49	PREDICTED: polyadenylate-binding protein RBP47-like [Gossypium raimondii]	[more]
gi\|590592611\|ref\|XP_007017329.1\|	1.3e-11	80.49	RNA-binding protein 47C isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G015650.1	ClCG08G015650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 5..45 score: 1.3
None	No IPR available	PANTHER	PTHR24012:SF403	POLYADENYLATE-BINDING PROTEIN RBP47A	coord: 5..45 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G015650	Cla022544	Watermelon (97103) v1	wcgwmB400
ClCG08G015650	Cla97C05G101260	Watermelon (97103) v2	wcgwmbB327
ClCG08G015650	Bhi04G000285	Wax gourd	wcgwgoB612
ClCG08G015650	Bhi09G002755	Wax gourd	wcgwgoB656
ClCG08G015650	CSPI02G19430	Wild cucumber (PI 183967)	cpiwcgB172
ClCG08G015650	CSPI04G23890	Wild cucumber (PI 183967)	cpiwcgB350
ClCG08G015650	Cucsa.123510	Cucumber (Gy14) v1	cgywcgB195
ClCG08G015650	Cucsa.232650	Cucumber (Gy14) v1	cgywcgB407
ClCG08G015650	CmoCh12G004590	Cucurbita moschata (Rifu)	cmowcgB161
ClCG08G015650	Lsi08G014460	Bottle gourd (USVL1VR-Ls)	lsiwcgB438
ClCG08G015650	Cp4.1LG07g04610	Cucurbita pepo (Zucchini)	cpewcgB748
ClCG08G015650	CsaV3_2G028130	Cucumber (Chinese Long) v3	cucwcgB176
ClCG08G015650	CsaV3_4G034120	Cucumber (Chinese Long) v3	cucwcgB350

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG08G015650	ClCG05G019630	Watermelon (Charleston Gray)	wcgwcgB166

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G015650	Melon (DHL92) v3.6.1	medwcgB288
ClCG08G015650	Melon (DHL92) v3.6.1	medwcgB496
ClCG08G015650	Silver-seed gourd	carwcgB0106
ClCG08G015650	Silver-seed gourd	carwcgB0178
ClCG08G015650	Silver-seed gourd	carwcgB0264
ClCG08G015650	Silver-seed gourd	carwcgB0752
ClCG08G015650	Watermelon (97103) v2	wcgwmbB336
ClCG08G015650	Watermelon (Charleston Gray)	wcgwcgB138
ClCG08G015650	Cucurbita maxima (Rimu)	cmawcgB029
ClCG08G015650	Cucurbita maxima (Rimu)	cmawcgB169
ClCG08G015650	Cucurbita maxima (Rimu)	cmawcgB434
ClCG08G015650	Cucurbita maxima (Rimu)	cmawcgB712
ClCG08G015650	Cucurbita moschata (Rifu)	cmowcgB023
ClCG08G015650	Cucurbita moschata (Rifu)	cmowcgB435
ClCG08G015650	Cucurbita moschata (Rifu)	cmowcgB716
ClCG08G015650	Wild cucumber (PI 183967)	cpiwcgB601
ClCG08G015650	Cucumber (Chinese Long) v2	cuwcgB169
ClCG08G015650	Cucumber (Chinese Long) v2	cuwcgB332
ClCG08G015650	Cucumber (Chinese Long) v2	cuwcgB568
ClCG08G015650	Melon (DHL92) v3.5.1	mewcgB295
ClCG08G015650	Melon (DHL92) v3.5.1	mewcgB502
ClCG08G015650	Watermelon (97103) v1	wcgwmB412
ClCG08G015650	Watermelon (97103) v1	wcgwmB421
ClCG08G015650	Cucurbita pepo (Zucchini)	cpewcgB125
ClCG08G015650	Cucurbita pepo (Zucchini)	cpewcgB528
ClCG08G015650	Cucurbita pepo (Zucchini)	cpewcgB708
ClCG08G015650	Bottle gourd (USVL1VR-Ls)	lsiwcgB305
ClCG08G015650	Cucumber (Gy14) v2	cgybwcgB155
ClCG08G015650	Cucumber (Gy14) v2	cgybwcgB309
ClCG08G015650	Cucumber (Gy14) v2	cgybwcgB529