ClCG08G015520 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCATCTACTGGAAACCGAGCTCCCCCTCTTCTCAGATTCCTCTCCGTTGACTTCCCCTAAAACCCCATCTCCGTTCATCCATACTTGGCTCATCCTTTGATTTTCCCATACTCGATCCAACCCCCTCCGGTTTGTAGTTCCACTTTCAATTCCCCGCTTCGGACGCCGATTCTCTGTTTTCCGAAGAAGAAATGGCGTTTATCCTTCTCTAGGCTGTTGTGATTCTTCCTTCCTCGTCTCTGCAACCAACCTGCTTCAAATCCTAATCCACCTACTCAAATTTGCAGTCATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCTTGTATTTTTGGATCGACCCATAATCCGGAGCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCCGATAGCCGGCGGTTCAAGCCTGGTGACTCTGTCGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAAGGGTTGGGGAAAGCCCTAAGAATCCCATGGTTTTGGGTTTGATGTCGATGTTGAAATCGATGGCCGATTCTTCTGTGATCAGTACGGGGACTTTTGGGGTTTCTTCGTTTAAAGCCACTTCGATTATACCCTTTTTACAAGGATCGAAGTGGCTTCCGGGTTATGATATACGATCTCGTGTAAGCGACGATGTGGATAAAGGCGGAACAACGGTTTGTTATGATTATGATCTATGTGGGAGTAAACAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAGTACTTATTCCGAGGACGCAAAGGCCCTCTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCTTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTGTCCTACTCTGGAAGTAGGGGATCGTATTTTAGCAGAAAAGGTGATCCTTACTTTATTGAATTGAAAACTTCTGGATTGAATTGTTGATATCTTCTAATATGTTGACTGGCAGTTTCAGAATTTGTATCCAAACCATGATATAAGATGTTTTCAAATGACTTTTGATGAATAGTAATTTATGATCTAATATTACTAAGGTCTGGATTACATTCTTCTTTTATGACTATGATTACGTTAATTAAACTATTGAACGTAACATTCATAAGACAAAAAATTGTTTATTTCTTGTTTCAGTTTTCAAAATGATCAAGGGTCATGGAAGTTGCCTTAACCTGTTCCTAAACTGACCTCTATTGCTTTTCCTTCTTATACTAGGTTTCGTACTTTTTCAGGAAACCTGAAGTTTCAGATATAGTGATCTTTAGGGCTCCTCAAATCTTGCAGGTATCACTTTAATTAATGAGGTAATTCCGAGGAAATTTTCCTGTTTAGTAATGTTGGATGCTGATATTTCTTGACCTTTCTTGCACCTCATTTAGGAATTTGGAGTTAGTTCAAATGAAGTGTTTATTAAGAGAGTTGTGGCTACATCTGGGGACGTGGTTGCAGTAAGTGTTCTTCAGAATTTTAACTTATGTTTCTTTATTATGCTATAATTCTATGTTTTGTTCGTAATCCAATAATAATAATAATAAATAAATAAATTCTATTATTTGTTCTCTGATTCATATGTAAGCAAATAAGTGAAATAACTTATTAACCTGAATTTCAAGTAACATCACAGACTATAAATCTACTATATTATGGAGATAAGTGAGGATTTTAAATTAGCTAGAAGCAGCATCATGGGATGGAATATTCTGGAGCCATTAGTCACCTGGTTGTTCTTACAATTATTTTGCTTGAGAACCTGGGCACAAATCCTGATTGCTAGATTTTCATTTATACAGCTGATAGATTTAGACACTCCTTGACTAAGTTCACGGGTTACAGTAGCTCCTTTGGATTTTGAAAATCTAGCTTTAAGGATTTGTGTCCAGCTTCTCAGCCATGAATCTATAAGGATTCTTCCGCATGTAGATTTGGCACAATGATTTTCATTTATACAAAAAAAGCCTTATTTTATCATATGGCACAATGAGTATCTGGGCCATGCTCAGCTTATGGATTTGATCAATGCCATATGTATGAACCTACCATGGTGTCTGCTAATTTAGACATGACTAAGTTCACGGGACAAATATACTACATATAGTTGCAATGGAAACTAAGAAGATATGAAATCTTAGGTAGGTGGCTACCATAGTTTGAGTATATTTCTTTTTTGCCCTTTATGTTTGTTTCATTGAGCAAGGTGACCACTCACTGATCCATGATGATTTAGATATAGATATTAAAGTCCTTCCAACTTATACTTTGATGGTTTGTCTTTCCCCCTAATGATACACCATGAAATAAAATATTTTCTATGCTTTGTAATTAATTATTGGTTGTAGGACATATCTTCAACGCCGGAGATAAATAGGGAACCAAATGTAGTTACAATATGAGATAGTCGCTCAGCACCAACCATTAGTGAAAAATAGGACTCTCGAACAATTGGTAGTTGCTCAACACTAAATATTTTGATCGAGTATCCCATAAGCATTTAAGATTTGACCTTTAGTCATCTTGTTTTTAACTTCTGACCAGAATTAGTTTGGTTCTCTTTGCTTTGACATTAATTACTTGAGGCATGTGGTTCTCTTTGCTTTGACGTTAATTACTCGAGGTATTTGAATGTCATATTGTAGGTTCAAAAAGGGAAATTGGTGGTAAATGGTGTAGTTCAAGATGAGGACTTTGTCTTAGAGCCAATTGCTTATGAGATGGATCCATTGGTAATTGTCTGTCCTTTTTAACCTTCTCTCTCTCCCCCCCGGAGGGAAGATAAAAATCCTGAATTCTGTTCAAAGGATAGACAGTTTGCTCAATCCGATTATCTTGTTTTCTTCTACAGCTTGTGCCTGAAGGTTATGTGTATGTAATGGGGGACAACCGTAACAACAGTTGTGATTCTCATGACTGGTAAGTTCACCATCTCAGCTTTCATGTTGTATAATGTGAGAGTACTATTAGGGGATAAATAAGGAATATTAGTTTAATATATGTGAGGACATAGTGGTAATTAGCTAGGGGAGACTTGAGGGAGTTTGAGATCTTAGAAGGGGGATCATTTTAGTGAGGATTGTCCATAGTTGGACTTTGGGAGAGAAATAGCTCTCTCGATAGTCTATTGTTATATTGTGATTTCTGTTGATAATGCTATATATGACAATCTTGTGTTTCTGTGTGTTTTCTGTGTTTGGATGCCTAGCATCTAATTTATTTGGAACTTGTGGTTATCAACTGTTGGTACATACACATGTTTTATGTTATTCTGTACATGTCGTAATGCTTTCATGAGTAGATATCGGCTGTATCCCTGATGCTTTCTTTTTCCTTCTTTTTAAAGAGAATATTGACGATGATAGCAATCAATCTTTCTGATACTATGGTATGTCTAACTCTATTTCTTCTTCTCCAGGGGTCCACTCCCAATAGAAAATATTGTAGGTAGATCATTATTCAAGTATTGGCCTCCCTCCAAGGGATCCGGTATGGTTGATGAATCACATGCAAGGAAGATTAATCTGGGTATTTCCTGACACAATGTCCTTGGTATTACCCTACCCTGTCACACTTTCACAGGGATGAAATTGCCCCTTTTCGGTACCAACCGCTGCAATATCTTTGCATATAAAACTTGGATTGGACTTCATGTCCGAATGGTGTGTATTAATGGAAGTAACTCCTGTACCTTGTGATGTCATATCCTATGCTATTCTTCATCCAAGATGGGATAGAAGAAAAAAAAAAAAAAAAAAA TCATCTACTGGAAACCGAGCTCCCCCTCTTCTCAGATTCCTCTCCGTTGACTTCCCCTAAAACCCCATCTCCGTTCATCCATACTTGGCTCATCCTTTGATTTTCCCATACTCGATCCAACCCCCTCCGGTTTGTAGTTCCACTTTCAATTCCCCGCTTCGGACGCCGATTCTCTGTTTTCCGAAGAAGAAATGGCGTTTATCCTTCTCTAGGCTGTTGTGATTCTTCCTTCCTCGTCTCTGCAACCAACCTGCTTCAAATCCTAATCCACCTACTCAAATTTGCAGTCATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCTTGTATTTTTGGATCGACCCATAATCCGGAGCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCCGATAGCCGGCGGTTCAAGCCTGGTGACTCTGTCGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAAGGGTTGGGGAAAGCCCTAAGAATCCCATGGTTTTGGGTTTGATGTCGATGTTGAAATCGATGGCCGATTCTTCTGTGATCAGTACGGGGACTTTTGGGGTTTCTTCGTTTAAAGCCACTTCGATTATACCCTTTTTACAAGGATCGAAGTGGCTTCCGGGTTATGATATACGATCTCGTGTAAGCGACGATGTGGATAAAGGCGGAACAACGGTTTGTTATGATTATGATCTATGTGGGAGTAAACAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAGTACTTATTCCGAGGACGCAAAGGCCCTCTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCTTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTGTCCTACTCTGGAAGTAGGGGATCGTATTTTAGCAGAAAAGGTTTCGTACTTTTTCAGGAAACCTGAAGTTTCAGATATAGTGATCTTTAGGGCTCCTCAAATCTTGCAGGAATTTGGAGTTAGTTCAAATGAAGTGTTTATTAAGAGAGTTGTGGCTACATCTGGGGACGTGGTTGCAGTTCAAAAAGGGAAATTGGTGGTAAATGGTGTAGTTCAAGATGAGGACTTTGTCTTAGAGCCAATTGCTTATGAGATGGATCCATTGCTTGTGCCTGAAGGTTATGTGGGTCCACTCCCAATAGAAAATATTGTAGGTAGATCATTATTCAAGTATTGGCCTCCCTCCAAGGGATCCGGTATGGTTGATGAATCACATGCAAGGAAGATTAATCTGGGTATTTCCTGACACAATGTCCTTGGTATTACCCTACCCTGTCACACTTTCACAGGGATGAAATTGCCCCTTTTCGGTACCAACCGCTGCAATATCTTTGCATATAAAACTTGGATTGGACTTCATGTCCGAATGGTGTGTATTAATGGAAGTAACTCCTGTACCTTGTGATGTCATATCCTATGCTATTCTTCATCCAAGATGGGATAGAAGAAAAAAAAAAAAAAAAAAA ATGGCTATTCGTGTTACTCTCTCCTACTCTGGCTATGTCGCCCAAAACCTAGCCTCCTCCACCGGCCTTCGGGCCGGTAACTGCCGCGTCTTTCAGGAGTTTTGGGTCCGATCTTGTATTTTTGGATCGACCCATAATCCGGAGCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCCGATAGCCGGCGGTTCAAGCCTGGTGACTCTGTCGAGAAGCCAACTTCTATGTACAGCACTCTCGCCGGAGAAAGGGTTGGGGAAAGCCCTAAGAATCCCATGGTTTTGGGTTTGATGTCGATGTTGAAATCGATGGCCGATTCTTCTGTGATCAGTACGGGGACTTTTGGGGTTTCTTCGTTTAAAGCCACTTCGATTATACCCTTTTTACAAGGATCGAAGTGGCTTCCGGGTTATGATATACGATCTCGTGTAAGCGACGATGTGGATAAAGGCGGAACAACGGTTTGTTATGATTATGATCTATGTGGGAGTAAACAGTTTTATGAGAATGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAGTACTTATTCCGAGGACGCAAAGGCCCTCTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCTTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTGTCCTACTCTGGAAGTAGGGGATCGTATTTTAGCAGAAAAGGTTTCGTACTTTTTCAGGAAACCTGAAGTTTCAGATATAGTGATCTTTAGGGCTCCTCAAATCTTGCAGGAATTTGGAGTTAGTTCAAATGAAGTGTTTATTAAGAGAGTTGTGGCTACATCTGGGGACGTGGTTGCAGTTCAAAAAGGGAAATTGGTGGTAAATGGTGTAGTTCAAGATGAGGACTTTGTCTTAGAGCCAATTGCTTATGAGATGGATCCATTGCTTGTGCCTGAAGGTTATGTGGGTCCACTCCCAATAGAAAATATTGTAGGTAGATCATTATTCAAGTATTGGCCTCCCTCCAAGGGATCCGGTATGGTTGATGAATCACATGCAAGGAAGATTAATCTGGGTATTTCCTGA MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQEFWVRSCIFGSTHNPELKSAGSARNYRSDSRRFKPGDSVEKPTSMYSTLAGERVGESPKNPMVLGLMSMLKSMADSSVISTGTFGVSSFKATSIIPFLQGSKWLPGYDIRSRVSDDVDKGGTTVCYDYDLCGSKQFYENDFEKSSWVSRLLSTYSEDAKALFTALTVSVLFKSFLAEPKSIPSSSMCPTLEVGDRILAEKVSYFFRKPEVSDIVIFRAPQILQEFGVSSNEVFIKRVVATSGDVVAVQKGKLVVNGVVQDEDFVLEPIAYEMDPLLVPEGYVGPLPIENIVGRSLFKYWPPSKGSGMVDESHARKINLGIS
BLAST of ClCG08G015520 vs. Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2) HSP 1 Score: 318.5 bits (815), Expect = 8.9e-86 Identity = 191/364 (52.47%), Postives = 234/364 (64.29%), Query Frame = 1
BLAST of ClCG08G015520 vs. Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 2.2e-84 Identity = 187/367 (50.95%), Postives = 236/367 (64.31%), Query Frame = 1
BLAST of ClCG08G015520 vs. Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2) HSP 1 Score: 189.1 bits (479), Expect = 8.2e-47 Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1
BLAST of ClCG08G015520 vs. Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB1 PE=3 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 2.9e-28 Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 1
BLAST of ClCG08G015520 vs. Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB2 PE=3 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.5e-24 Identity = 60/183 (32.79%), Postives = 102/183 (55.74%), Query Frame = 1
BLAST of ClCG08G015520 vs. TrEMBL
Match: A0A0A0LNI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360710 PE=4 SV=1) HSP 1 Score: 618.2 bits (1593), Expect = 6.1e-174 Identity = 322/370 (87.03%), Postives = 333/370 (90.00%), Query Frame = 1
BLAST of ClCG08G015520 vs. TrEMBL
Match: A5AT48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021649 PE=4 SV=1) HSP 1 Score: 398.3 bits (1022), Expect = 9.9e-108 Identity = 213/370 (57.57%), Postives = 267/370 (72.16%), Query Frame = 1
BLAST of ClCG08G015520 vs. TrEMBL
Match: W9QJL9_9ROSA (Putative thylakoidal processing peptidase 2 OS=Morus notabilis GN=L484_014439 PE=4 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 3.7e-107 Identity = 221/359 (61.56%), Postives = 270/359 (75.21%), Query Frame = 1
BLAST of ClCG08G015520 vs. TrEMBL
Match: A0A0A0L290_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G638430 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 4.7e-102 Identity = 207/357 (57.98%), Postives = 253/357 (70.87%), Query Frame = 1
BLAST of ClCG08G015520 vs. TrEMBL
Match: M5XSH9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007329mg PE=4 SV=1) HSP 1 Score: 379.0 bits (972), Expect = 6.2e-102 Identity = 210/374 (56.15%), Postives = 266/374 (71.12%), Query Frame = 1
BLAST of ClCG08G015520 vs. TAIR10
Match: AT2G30440.1 (AT2G30440.1 thylakoid processing peptide) HSP 1 Score: 318.5 bits (815), Expect = 5.0e-87 Identity = 191/364 (52.47%), Postives = 234/364 (64.29%), Query Frame = 1
BLAST of ClCG08G015520 vs. TAIR10
Match: AT1G06870.1 (AT1G06870.1 Peptidase S24/S26A/S26B/S26C family protein) HSP 1 Score: 313.9 bits (803), Expect = 1.2e-85 Identity = 187/367 (50.95%), Postives = 236/367 (64.31%), Query Frame = 1
BLAST of ClCG08G015520 vs. TAIR10
Match: AT3G24590.1 (AT3G24590.1 plastidic type i signal peptidase 1) HSP 1 Score: 189.1 bits (479), Expect = 4.6e-48 Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1
BLAST of ClCG08G015520 vs. TAIR10
Match: AT1G23465.1 (AT1G23465.1 Peptidase S24/S26A/S26B/S26C family protein) HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06 Identity = 40/131 (30.53%), Postives = 62/131 (47.33%), Query Frame = 1
BLAST of ClCG08G015520 vs. TAIR10
Match: AT1G29960.1 (AT1G29960.1 Peptidase S24/S26A/S26B/S26C family protein) HSP 1 Score: 49.7 bits (117), Expect = 4.4e-06 Identity = 44/157 (28.03%), Postives = 69/157 (43.95%), Query Frame = 1
BLAST of ClCG08G015520 vs. NCBI nr
Match: gi|659087831|ref|XP_008444657.1| (PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 619.4 bits (1596), Expect = 3.9e-174 Identity = 322/370 (87.03%), Postives = 336/370 (90.81%), Query Frame = 1
BLAST of ClCG08G015520 vs. NCBI nr
Match: gi|449470027|ref|XP_004152720.1| (PREDICTED: thylakoidal processing peptidase 1, chloroplastic [Cucumis sativus]) HSP 1 Score: 618.2 bits (1593), Expect = 8.7e-174 Identity = 322/370 (87.03%), Postives = 333/370 (90.00%), Query Frame = 1
BLAST of ClCG08G015520 vs. NCBI nr
Match: gi|1009135046|ref|XP_015884774.1| (PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 406.8 bits (1044), Expect = 4.0e-110 Identity = 221/361 (61.22%), Postives = 266/361 (73.68%), Query Frame = 1
BLAST of ClCG08G015520 vs. NCBI nr
Match: gi|225458489|ref|XP_002284120.1| (PREDICTED: thylakoidal processing peptidase 1, chloroplastic [Vitis vinifera]) HSP 1 Score: 398.3 bits (1022), Expect = 1.4e-107 Identity = 213/370 (57.57%), Postives = 267/370 (72.16%), Query Frame = 1
BLAST of ClCG08G015520 vs. NCBI nr
Match: gi|703074865|ref|XP_010089929.1| (putative thylakoidal processing peptidase 2 [Morus notabilis]) HSP 1 Score: 396.4 bits (1017), Expect = 5.4e-107 Identity = 221/359 (61.56%), Postives = 270/359 (75.21%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |