ClCG08G009890 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G009890
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 22677627 .. 22684343 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGTGAGCCAACTAACGAGGGGCACGTGGCTGGATTCTGGATCATCCTCTTCTTTCTTGTGGGGTAGCTCTCCGGTCCTCTCAACTGACCACGCTCACCTTCCATATTTAAATCCCAATTCATCCAACTTCCATCATTCAATTTCCTCTTCGCCGGATCACCGCCGGATTCCACTCGCCGACTCTGAGTGAGCTTTCAGGTAGGTTTTCTACTTGCATTCCTCTCTCCGATACTGATTCCCGTCTTTGTTCTTCCACTTATTTTGTTGTTTATTTACTTTGAAATGGATTTTGGCGCGTTTCTAGATCTGGATTCAAATTTCTGTTTGGCTGTTAAACATTTGTGCTTTCTCGATCTCTTTACTCAGTGGTGTCAAGTTCCTGCTGATCATTGAGATATCGTGTTTGTCGATCTTTCGGAAGCTAATTGTTACGTGCTGTTGAAATTGATTGAACTTTTTTTTTTTTTTTTTTTTTTGGGATAAATCTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTGGAATAAATCTTTGTGTATATGATCGTTTCATCTGCTATGAATTGACCTTCTGTGCTTTTTTGTTCGGCATTGATCTTAGACGGAGTTTTGTAATTCCAGCGATAAGAGTTCGGTAAGCGTATGTTTGAACATCTCAACTGATGTTGTCGATTCGATTTTTCTAATCTACACATTGCATGTGCGTACAAGGATTAATCAATCTACTGAGAGAGCAGGTAGAAAAGACACTATGTCTGAACCTCTTAGGTATTTACTTAAGAGTGCTGGACAGATGAGAAAATCCATGAGGCTAATTAGACGACTTAAGGATAGACAGTCTGGGAAGAACAGGTAATTAGGCCAACTAACCATAATAGGTTGAGTTAGGTGACCATCTTTGCGAGCTTTCTTGGCGATGATTCAAATTTCTTTTTGAGTTTCAGCAGTGATCTGGTAGGCTGTTGTTGGATTCCTGTTCCCTTTCTCCCTCCAGTCAGTTCAATGTTGCAAGTTGTTCGATTCAGTTTTCGAATTGATTTATTGATTGATCGGTTTACCTTTAATGCGCATAGTGTTTTTGTCAAACTTAGTAATCAAAGTGATGAATCATATGATTAACGAGTTAGGTTACTGATTTACTGTTCTTGACTAGATAATCAACTTTTGTGGTTAGGGGCAATATGTTAGGGAAAGTGCATTCATGGCCACCTGATCTCATTAATTACCTTCATTGAATCTGTGTATAAAGCCAACAACATTACTCTATTAATTCTTTTTGTTGTACTTCTATTTAAACCTTTTCTGGGCTGTTTTTTCAGGAAAAAAAGTTAACAGTGAAAAGTTACGAAGAATCACACTGCTATTAGCAGGTCCCTTTAACGTTCACCATGGCTACTGGACAAATATTTTCTCGCACGACACAAGCATTATTCTATAACTACAAGCAACTTCCCATCCAACGGATGCTTGATTTTGACTTCCTCTGCGGTGTGTATTAATTCTTGTAACTTTGCCTTTGTTAGATTGTCGTATCAAGTGGCTATGGTTTTTGTACTCTGAACTGAACTAATCTGTCTGACTCACTATACAGGGAGGGAAACACCATCAGTTGCTGGAATCATCAATCCTGGTTCTGAGGGATTTCAGAAACTCTTTTTTGGTCAAGAGGAAATTGCCATTCCGGTGCATTCAACGTGCGTAATATATCTCATTCTTTTGTAATAACTATTTGTAACCTCTCTCCTTCATCGATACATAATTCTAGTTATCAATATCAAAGTATTGCTCACTATGTTTCACTTTCAATGGCTTTTAGTACGGGACACTGCTTTTAATTTAATTGCTACAATGCCACATTCCTTTTCAGCTATAGCATTATAATGTCTTTGGAAACAGTAACAGATATAGCTTCTAAGTTGTAGATTTAAATGATCTTATGTTTAGGTTATCTTTCCATTCTTTTATCTCATCTGTAGACGTTGGTTTAGAAATCAGAATAAATGAATTAACATCTCAATTTCTCTTTAATTGTTGCTCAGGATTGAAGCAGCTTGTGCAGCACACCCCACTGCTGATGTTTTCATCAACTTTGCATCTTTTAGAAGGTTGGTAATCGTTGTTTTAATGATATTGTGATGTAGAGGAATTTTCTGTTCCCACTCACAATCAGTTCGTACTTCCGTGTAGTGCTGCTGCATCGTCAATGGCTGCTTTGAAACAGCCCACCATCAGAGTTATAGCTGTCATAGCTGAAGGTGTTCCCGAGTCGGACACCAAACAATTGATTGCATATGCACGGGCAAACAATAAGGTAAAAATGTTTTTGATGCTTCAAGTAGTATTGATCTCTCCTAGCTTTCGTAATACAAAAATAAATATTCTTGATCTTATGTACATCATACAAAACGCCGCATATATGAACCAAATGATGAGTGGCGCAAGGAAAACAAGAACAGGGTCAATAAGTCGTGTAATCTTCATTGAAATCGATTTCTCTATGCTTAATCTGCAGGTTGTTATTGGCCCAGCTACTGTTGGTGGCATACAAGCTGGAGCATTTAAAATTGGTGACACTGCTGGAACGATTGACAATATTATACAATGCAAGCTATACAGACCAGGATCTGTTGGTTTTGTCTCTAAATCAGTAAGCAGCCTCTTATTCTTTTCCTTAATTCTTGTTGTCAACTTACTTCTTTCAACCAAATTCTGCTCTTAAAGTATGAAGATATGAGATAGATTGATTATGCATCAACAAATTGTTATGGGCATTATAGATCGATCTTATTTCAATGTTTAAGTGCTTATCCAGTCAATATTTTCTCCACACTGACCGACTTTCTCAAGATTACATTACGTTTCTCTTTTGAATTGCTAAACCTCATTGCCTTCTACTTAACCTACACATTAATGACGGGAGATATTTTGTTATAATGCTGCAGGGTGGAATGTCTAATGAGATGTATAATACTATTGCACGTGTTACTGATGGAATTTATGAAGGTAAACGTCCACGGCACCTCGCGGGTCTTATTTTAGGGCTGTTTGATGTGATATTTGATCAATTCTTGTACTGTACAGGTATAGCAATTGGAGGGGATGTGTTTCCAGGTTCGACTCTTTCTGATCACATTTTGCGGTTTAACAACATTCCACAGGTATTCTGATCTACAGCTTCTAAAAATACCATTCAATTTATCTAGTCATCTCCGTTTGGCCGTTCAAGTCTTGAATGGTCCAGATTCGTTGGCTGCTTTTGCAGTTTGTCACTTCCATTCAATGTGTGTTTTTTTAACTTTTTGGCCCATTCTTAGGTTAAAATGATGGTTGTGCTTGGAGAACTTGGTGGCCGAGATGAGTATTCTTTAGTTGAAGCTTTGAAGCAAGGAAAAGTTAACAAGCCAGTGGTTGCCTGGGTTAGTGGCACTTGTGCCACATTGTTTAAATCTGAAGTTCAATTTGGTCATGCCGTAAGTTGATTTTAGATTTACCTCGCTTACGGTATTGTTCTTTTATGATATGGTTGGCTGACACATTATTTGCTTCTTACCTTCCTTCTAGGGAGCAAAAAGTGGTGGTGAGTTGGAGTCTGCACAAGCAAAAAATCAAGCTTTGAAGGAAGCTGGAGCTATTGTTCCTACATCATATGAGGCCCTTGAAGCTGCAATTAAGGAAACATTTGAAAAATTGGTAAAGTTGCATTATATGACTTTATTCTATAATATCAAGGAGCTATTTTCGACCACCGTCCTTGTCCTTATATTTGTATGGGAGGGATAAATGTTCCTCGACTTTACTAGTGGCACTATCAGATAATTATATTTGGCCATCTGATCCACTCCTAGGTTGGAGACGGGAAAATTACTCCAGTAAAGGAAGTGAAGCCTCCTCAAATTCCTGAGGATCTTAACTCAGCAATTAAGAGTGGGAAAGTTCGGGCACCAACCCACATTATTTCCACCATTTCTGATGACAGAGGTATGCTTTCAACCTGATCGCTTATTATCTTAAAGAATTGTTCTTGCGTTTAATTTGGTATTCTAAAGATTTCAATTATTAATCTGTCTCTCTCTCCCCACAAAAAAAAAAAAAAAAAGGTGAGGAGCCAAGCTACGCTGGAATACCAATGTCTTCAATTGTTGAGCAAGGCTATGGCGTTGGGGATGTCATTTCACTCCTATGGTTCAAACGCAGCCTTCCTCGTTATTGTACACATTTCATTGAGGTTTGTAGCTCATTTTATGAAATTAAAATGTCACTTGCTATTGGTTGCCTAGTTTTGAGCTCATTAAAAAGACATGTTTGGGAGTGATATTGAATTAGCTAAAATTATTTCAAAACATGTTTATTTTATTACTCTTTTCATGTTCAAAATTCAAATCAATTTAATATTTATTTTGGAGTGCTTCTAAACATACCAAAAAACAGTTTTAAAATCACTCGCACGCAAACATATTTCAAGTATTGAAGGAGGATATAGAGTGAAATTCAGGACTCTTTTTTGAATTTTGGCATTTCCACTTTCACGAACACTTTTGAAAATTCATTCCCTCAACAGATATGTATCATGCTCTGTGCTGACCACGGTCCTTGTGTATCTGGGGCGCATAACACCATAGTAACTGCAAGGGCTGGAAAAGACCTTGTGTCCAGCCTTGTCTCAGGTATGTGGTAGCTGTCATTTTGGGCTGGTTTTGATTCACTGCAGAAAAAAAAATGTTTTTTAAAAAAATCATTTTTATTTAAACTCTTTTAATAAATATAGTTTACAATACATTTCGAGAGTGTTTTAAAAACTATTTTGGGTTACCAAACATTCCAATTTTTTTTTCTAAAATTACTTATTTTCAAAATTAAAGACTTGAAAAATTAAATCAAACGCCCCTTTCATTTTCCTTCTAATGTAATTCCTCTTCTCTTCACACGCCATGGCTTTTAACTCCCCAAGTCTGGTTTTTTACCTGATGAGTAACTTTCTGAAACAGGTTTGCTTACTATCGGCCCTCGATTCGGTGGGGCCATTGACGACGCCGCTCGATACTTTAAGGATGCTTGTGAAAGAGTGAGAATTTAGAAATTTTGAATTAACATGGTGCCTGCGAGTCTGTAATCTCTGTATGATTCTATGATTTATTTTTTCCCTGCCTTCTTGTAGGGTCTTACGCCTTATGAGTTTGTCGAAAGCATGAAGAAGAAAGGAATTCGCGTGCCTGGAATTGGTCACAGGTACACTCCCAATAAATTAAATATATATAATTTTCATATGATATACCATACAATAGTCTAACATTATAGACCTCTATCATCAAAGACAATTTCAGTATTTTCTATCAATGACATTTTAATGGTCTATCACTAACAAATTATTTAAGTCTTCATTGATAGACCATTACCACATTCTATCACTAATAGACTATTTTTATATCTGTTGGTATACTATTCTTGTATCTATCACCGGTAGAACATTTTTATATTAAGTCTATGATAATCCATAGTTTAATAGGTACTAATAAAAGTTGCAAATATTTTTAGATTGTTCTATTTTGTGTTAGTTCGCCATTTTATTTAAATATTGTCTTAGTTATGATATTAAACAAAATTATGTTTGATTATTTGTGTGTAAAAGGATAAAGAGAGGCGACAACAGAGACAAGAGAGTGGAGCTGCTGCAGCGGTTTGCAAGAACACATTTTCCATCAGTGAAGTACATGGAATATGCTGTGGAAGTTGAGACTTACACACTCTCAAAGGCAAACAACTTGGTTCTTAACGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGCAGTGGAATGTTCAGCAAACAAGAGATTGATGAGATCGTCCAAATTGGCTATTTGAACGGCCTCTTTGTCCTCGCTCGCTCCATTGGTCTCATAGGGTAAGTAAATACCAATTCTTCTATTTTTTATTTTATTATTATAATTATTTTTTGGGTGAGGGGTAAATTATAAAAGGTAGCCTTGAACTTTATTTTTTGTTTAAAAAATGTTCCTATACTTTCAATAATTTCAATATTACCCTCAAACTTCCAATCATGCCTAAAAATGATATATATATCTAAACTTTACTGTTTCAATTATAGTTCTGTCTGTTGTTTAGTTGGTCTCTAAGATTAATGTTCACCTTTGGCAGACATACATTTGATCAGAAGAGACTAAAACAGCCTCTATATCGCCATCCTTGGGAAGATGTCCTCTACACCAAATGATAAGCTTAATAGCTGGAGCAACAAACGTCATTTTCAACAGGAATTATTTTTACTCTTTTCTTTTCTTTTACCTCTCCCTCTTTTCCACCTTACCTTTTTTAGATCAACGTATGCGTAATGTCTTGCTCTAAATTTTTCAAATTGTAGTTC

mRNA sequence

GCTGTGAGCCAACTAACGAGGGGCACGTGGCTGGATTCTGGATCATCCTCTTCTTTCTTGTGGGGTAGCTCTCCGGTCCTCTCAACTGACCACGCTCACCTTCCATATTTAAATCCCAATTCATCCAACTTCCATCATTCAATTTCCTCTTCGCCGGATCACCGCCGGATTCCACTCGCCGACTCTGAGAAAAAAAGTTAACAGTGAAAAGTTACGAAGAATCACACTGCTATTAGCAGGTCCCTTTAACGTTCACCATGGCTACTGGACAAATATTTTCTCGCACGACACAAGCATTATTCTATAACTACAAGCAACTTCCCATCCAACGGATGCTTGATTTTGACTTCCTCTGCGGGAGGGAAACACCATCAGTTGCTGGAATCATCAATCCTGGTTCTGAGGGATTTCAGAAACTCTTTTTTGGTCAAGAGGAAATTGCCATTCCGGTGCATTCAACGATTGAAGCAGCTTGTGCAGCACACCCCACTGCTGATGTTTTCATCAACTTTGCATCTTTTAGAAGTGCTGCTGCATCGTCAATGGCTGCTTTGAAACAGCCCACCATCAGAGTTATAGCTGTCATAGCTGAAGGTGTTCCCGAGTCGGACACCAAACAATTGATTGCATATGCACGGGCAAACAATAAGGTTGTTATTGGCCCAGCTACTGTTGGTGGCATACAAGCTGGAGCATTTAAAATTGGTGACACTGCTGGAACGATTGACAATATTATACAATGCAAGCTATACAGACCAGGATCTGTTGGTTTTGTCTCTAAATCAGGTGGAATGTCTAATGAGATGTATAATACTATTGCACGTGTTACTGATGGAATTTATGAAGGTATAGCAATTGGAGGGGATGTGTTTCCAGGTTCGACTCTTTCTGATCACATTTTGCGGTTTAACAACATTCCACAGGTTAAAATGATGGTTGTGCTTGGAGAACTTGGTGGCCGAGATGAGTATTCTTTAGTTGAAGCTTTGAAGCAAGGAAAAGTTAACAAGCCAGTGGTTGCCTGGGTTAGTGGCACTTGTGCCACATTGTTTAAATCTGAAGTTCAATTTGGTCATGCCGGAGCAAAAAGTGGTGGTGAGTTGGAGTCTGCACAAGCAAAAAATCAAGCTTTGAAGGAAGCTGGAGCTATTGTTCCTACATCATATGAGGCCCTTGAAGCTGCAATTAAGGAAACATTTGAAAAATTGGTTGGAGACGGGAAAATTACTCCAGTAAAGGAAGTGAAGCCTCCTCAAATTCCTGAGGATCTTAACTCAGCAATTAAGAGTGGGAAAGTTCGGGCACCAACCCACATTATTTCCACCATTTCTGATGACAGAGGTGAGGAGCCAAGCTACGCTGGAATACCAATGTCTTCAATTGTTGAGCAAGGCTATGGCGTTGGGGATGTCATTTCACTCCTATGGTTCAAACGCAGCCTTCCTCGTTATTGTACACATTTCATTGAGATATGTATCATGCTCTGTGCTGACCACGGTCCTTGTGTATCTGGGGCGCATAACACCATAGTAACTGCAAGGGCTGGAAAAGACCTTGTGTCCAGCCTTGTCTCAGGTTTGCTTACTATCGGCCCTCGATTCGGTGGGGCCATTGACGACGCCGCTCGATACTTTAAGGATGCTTGTGAAAGAGGTCTTACGCCTTATGAGTTTGTCGAAAGCATGAAGAAGAAAGGAATTCGCGTGCCTGGAATTGGTCACAGGATAAAGAGAGGCGACAACAGAGACAAGAGAGTGGAGCTGCTGCAGCGGTTTGCAAGAACACATTTTCCATCAGTGAAGTACATGGAATATGCTGTGGAAGTTGAGACTTACACACTCTCAAAGGCAAACAACTTGGTTCTTAACGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGCAGTGGAATGTTCAGCAAACAAGAGATTGATGAGATCGTCCAAATTGGCTATTTGAACGGCCTCTTTGTCCTCGCTCGCTCCATTGGTCTCATAGGACATACATTTGATCAGAAGAGACTAAAACAGCCTCTATATCGCCATCCTTGGGAAGATGTCCTCTACACCAAATGATAAGCTTAATAGCTGGAGCAACAAACGTCATTTTCAACAGGAATTATTTTTACTCTTTTCTTTTCTTTTACCTCTCCCTCTTTTCCACCTTACCTTTTTTAGATCAACGTATGCGTAATGTCTTGCTCTAAATTTTTCAAATTGTAGTTC

Coding sequence (CDS)

GCTGTGAGCCAACTAACGAGGGGCACGTGGCTGGATTCTGGATCATCCTCTTCTTTCTTGTGGGGTAGCTCTCCGGTCCTCTCAACTGACCACGCTCACCTTCCATATTTAAATCCCAATTCATCCAACTTCCATCATTCAATTTCCTCTTCGCCGGATCACCGCCGGATTCCACTCGCCGACTCTGAGAAAAAAAGTTAA

Protein sequence

AVSQLTRGTWLDSGSSSSFLWGSSPVLSTDHAHLPYLNPNSSNFHHSISSSPDHRRIPLADSEKKS
Homology
[Close]
BLAST of ClCG08G009890 vs. TrEMBL
Match: A0A0A0KFJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362960 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-11
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 2  VSQLTRGTWLDSGSSSSFLWGSSPVLSTDHAHLPYLNPN--SSNFHHSISSSP 53
          VSQL RGTW  +GS SSFLWGSSPVLST++AHLPYL  N  SSNF HSIS  P
Sbjct: 3  VSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFP 55

[Close]
BLAST of ClCG08G009890 vs. NCBI nr
Match: gi|700192385|gb|KGN47589.1| (hypothetical protein Csa_6G362960 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 2  VSQLTRGTWLDSGSSSSFLWGSSPVLSTDHAHLPYLNPN--SSNFHHSISSSP 53
          VSQL RGTW  +GS SSFLWGSSPVLST++AHLPYL  N  SSNF HSIS  P
Sbjct: 3  VSQLRRGTWQVAGSYSSFLWGSSPVLSTEYAHLPYLYSNSISSNFQHSISLFP 55

The following BLAST results are available for this feature:
BLAST of ClCG08G009890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFJ2_CUCSA2.1e-1173.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362960 PE=4 SV=1[more]
BLAST of ClCG08G009890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192385|gb|KGN47589.1|3.0e-1173.58hypothetical protein Csa_6G362960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G009890.1ClCG08G009890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G009890Cla97C08G152680Watermelon (97103) v2wcgwmbB336
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G009890Wax gourdwcgwgoB626
ClCG08G009890Cucumber (Gy14) v1cgywcgB046
ClCG08G009890Cucurbita maxima (Rimu)cmawcgB175
ClCG08G009890Cucurbita maxima (Rimu)cmawcgB709
ClCG08G009890Cucurbita moschata (Rifu)cmowcgB166
ClCG08G009890Cucurbita moschata (Rifu)cmowcgB713
ClCG08G009890Wild cucumber (PI 183967)cpiwcgB522
ClCG08G009890Cucumber (Chinese Long) v2cuwcgB496
ClCG08G009890Melon (DHL92) v3.5.1mewcgB296
ClCG08G009890Watermelon (97103) v1wcgwmB400
ClCG08G009890Cucurbita pepo (Zucchini)cpewcgB122
ClCG08G009890Cucurbita pepo (Zucchini)cpewcgB756
ClCG08G009890Bottle gourd (USVL1VR-Ls)lsiwcgB438
ClCG08G009890Cucumber (Gy14) v2cgybwcgB454
ClCG08G009890Melon (DHL92) v3.6.1medwcgB289
ClCG08G009890Silver-seed gourdcarwcgB0138
ClCG08G009890Cucumber (Chinese Long) v3cucwcgB514