ClCG08G009420 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G009420
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description26S proteasome complex subunit DSS1
LocationCG_Chr08 : 22048132 .. 22052533 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGCCGACTTGTCCCTCAAGATATCTCGATTCATTTTTTTCCAATAGAAATCAAGCAACACGAGACTCCCTCGATCTTCCCTGCTTCACGGCTCTCTCACAACTCTCTCTCAAGGTTCTTAGCTCCTTTCTCTCTCCATTTTTATCTGCCTAGAATTTAATCTAACATTTCTTACTCTCCACTATGCTTTACTGTTTGTCTTGTGAATTACGGTGTATTTGATGGCTTGCTTTATAATTTATGATGTGAATTCTCCGCAGAGTTAAGAGGGGAAGAGAACGAACATATGTATTTGCTTATTTTTCCTTTTGCTTCCAGTCCTCTCTTCTGCGTCTGCTTTCTTCTCTGTTTTTGTCTAGTATCTGCAACCTCTTCTCTACCGAAAAAGTACTGCATGAGGCCACCTCAGTGTGGCTGCGGGATGCCTCAAATACAGAATAAAAAGTGCCCAGTTTCTGACCTCTCAATTATGTATTTGGAAAACAGAAAAGTTTCAGAATTTAAGACCAAATCTTCTCTCCAGCGTAAAGCATTTCCTGTTTGGTCAACCTAGGTCAACCCTTTTGGGATTGGCTTGGTGCGAAATTTCAAGTTGGTTAAACAATCAAACCAAAAATTTGGGTTCATTGACTTGGGTCTAGAAAGTACTTCTCCCTCTTTAGGATCCCCTTGTTTGGTTTGTAAGACCATTGAGAAGCTTATGAGGGATTTCTTGTGGGAAGGGGTAGATGAAGGAAAAGGGGCCTACCTTGTGAATTGGGACGTGATTAGGAAGTCTGTGGACATGGGAGGGCTTGAACTTGAGATTTTAAGGACTAGTAACAAACCGCTGTTAGGCGAAATGGCTTTGACATTTCCCTCTTGAGCCTGAACCCTTGGTGGAGGATTATTGTGAGCAAGTATAATTTCACCCCTTTGGGGGGCGGTCAAATGGGATTAAAGGCCCTCACAGAGATTTGTGGAAGGATATCTTTAGTCTTTGGGGGGAGGGGAGGAAAGGATCAAGAGGTGGGGGATAGACCCCCTTGCACTAGGTTTCCTCGTCTTTACCATTTATCTTTATCCTCTTCAAGACACTGTTTTGTGATTGAGTTCTTAGTATGGTCTGGGTGCTCCCTCTCTTTTTGATTTGGCTCCCGTTTTCCTTTGTCCGATAGAGAAATGATAGATGTTACAATGCTCCTATCTTTGATTTGAAGAGTTTGATTTTAGGATCAGCAGGAGAGATATGTGTATTTGGTGCCCTAACCCTTATAGAGGCTTCTCTTGTATTTGGTGCCCTAACCCTTATAGAGGCTTCTCTTGTATTTGGTGCCCTAACCCTTATGTGATAAGGATCCTTTTCTTGGTTCTGTTGAATATTAAGATTCCAAAGAATGTTAAGTTCTTTTTCTGGCTGGTTATCCATGGACAAGGCAACACTCTTGATAGGGTCTAGAGAAACTGACCTTCATTGATTGGTCTCGTTTTGTTGTATCCTCTGTCAGAAGGCAAAGGAAGACCTTGATCATAGCCTTTGGAGATTTACTTCATGCATTTTATGTGGAGTGATTTTTGTAGCTGATTGGTTTTTTGTTAGTTCGCCATAGAGATTTGAATGAGATGATTGAGGAATGCCCTCTCCATCTGCCTTTTTAAGAGGAGTCATTTCTTGTAGCTTATTGGGGTGTGTACTTTATTGTAGGACCTTTGGGAAGAGAGGAATAATTGAATGTTTAGAGGTTTGGAAAGGGATTCAAGTGATGGTCTCTAGTTGGATTCCATGTTTCTCTTTGGACTTTGGTGACGAAGGTTTTGTTGTAGCTATTTGATAGGCATTATTTAACACTACTGGAGTCCCTTCAATGCCCTCCCCTTTTGTGGGTTTTTCTTTTTTCTTTTTCTTTTTTTTTTTCTTTTATATTTTAAATTTAAAAAAAAATGCTTGTATACTCTTTCATTTTTTTCCCCCAAATTAAAAGTTGTTTTCTCATTTTTTAAAAAGAAAAAAGGAAAAAAGGGGAAAAAAACGAAAACACATGCCTTCAGTTGTGTATCTTTCACTTATTAATGTATTTCAAATTTTTTGCTGATCTATCAGAATACTAAAGATTTGTAGATCAGAGTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAGGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAATTTGAGATTAATGAAGGTTTGACTTGAAACTATTTGTCTTTTTTGTTCCTTCCCTTGTTTGGATTCCTTCACGATTGCCTTTAATTTGCACTCATTTTTCATTTATCAGTGCTTGTGTTGTGCAATTTCTCCTTTGTTTCAGCCAAAAGAATGTGAATGTTATGCAACGGTCTGAAAATCCTGATACTAACTCAATCCTAACTGCTGGCATTCTTCATTTGGATGCCTCATTACTGTTGCACTCATTCATTTCACAGAGGCCAGTCTCTATCGAAAAAAAAAAAAAATCCATTATTTTGTAGTAAATTCTTGGAATCCAGTGTTTGAAGAAAATAAGGCAGAATGTTTGTAAACTCAATTGCAATAGTAAAAATTAGAAAAAAAACATATTGATGAGGATAAAGAAAAGTTGGAATAATGCATGGTTTTTAAAAGACCTCAAGTATACTTTATTTGGATGGACCTTTTTCTCTTTAAAATTTAAGCTATTAAAATTCTCTAGAGGTTTGTTTCAAGTTAATGTAAGAACTATTTTTTATTTTTTTATTTAATTAATTAATTAATTTATTTATTTTATTTAAAAAAAGCTTATAGAATTACTTCTTTTCCAAAAAGGAAAAAAAAGGTTTGTTTGGAGTTAATTTCTTTTGTTACATACATATTCGGATATTCCTTGTATGCTCAAAAGTGCTTGCAGTGGTACATAAGTAAGCTGGTAGAATAGCTTTTGAATGAATTTATTCAGATTTTGCTTTGATTACTGAAATGTTCTTGAAGTACATTTTTTTTTTCCAATTTATATTCCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAGGATGACCATGAAACCACTTCTCTTTGTTCAGCGGAAGTGGGCGCTTTTCTTTATTTTTCAGAAATGGTTACAGTTACTTGATTGTTAAGAAGAGAATAAAGAATCTTTAGTTTTACATTCAGATCATGTGGTTGCTCGATGATGTTGTCAACTGAAACTATGATTTGAAGGTCCTGCTAGTCTTTTGTTTCCTTTAACAAGAAAAACATTTCAGTGACAAGGAAGTTTTGGAGTTTGTTAAATGGAGCATTATAGGTTGTTGGTGTGTCAATACTAAACTCTTGATAGCTTGTTAATTTCACGGATGTGCTTGTATATGTCGTGCCAGCATAACATTGTTAACTAACTTAATGTCTTATGTTCTATACTTTTCATTCGTCACAATGTGTTATTTGTTATGTTTCAAAACGAAGTGAAGGATTTGATAAATTACCAGTTAAGGGGGATCTTGTGACTAGAATATATCTCCCAAATGGTGTCATTACATTGTTTGAGAGCTTTTATGCATTTATTATTATTTTTATTTAACTAGGAGTGTGCTTGGGGTGCTTAAGTGCACCTTAACTGATCTCAAAGAACAGCCATTCGATTCTATGACATTATAACACGTTAGTGTCAAGAAACTTGTGAGAGTTTGTTCTAAGTAGGTAACCACCCTGAGGTTTTTGAACAAATTCCTCAGTGTCTTTTACTTTTTCACATGCTCAAGGGCAATATTAGGGCAAGTAATGGTGGTTCTTGTTTGAGTGCATATAGAAGTTTAAGTTAGAACTTTGTCATATATATCATATATGTCCTAGTCGTCCTAATCCTAACAATATTGCTGCTAATCAGAGAGTTCAGAGGTCTTTTCCTCCTTTTCAAAGTTATTATGCAACTCTAATCTTCCTCAGATTCTGGGGTAAAGCTTATTACTCTTCTTGTTGTTGGCCTAACATCTTTAAGCCTAATGATATTTTTGTGATCTTTCCTTTTGATTCTCATTGGTGAAAATGGATTACAGAGTGGGAAGTCAAGGAAGGCAAAGAAATTACTCAGCAGTGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTTAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGACTCTAGACACTTTCTTTTTATCTGCCAACATCTATGTTTTATTTGCGCTGTTTGACCTTCAAGATGGTTTTATTGCCTTCTATATCTCAAATGGTGTCATTAATATTCATTTAAGATCAGCATATTGAATATCTATGGCCGTTGGCCCAGAAGATAAGGCATTCAGTTAATTTATCGATAGTCCTTGCTTTTACAATTCACTTTCACTTTCAAGTTTTGTCAAATTATTTAAGTTATCG

mRNA sequence

CTTGCCGACTTGTCCCTCAAGATATCTCGATTCATTTTTTTCCAATAGAAATCAAGCAACACGAGACTCCCTCGATCTTCCCTGCTTCACGGCTCTCTCACAACTCTCTCTCAAGAATACTAAAGATTTGTAGATCAGAGTGAGCTTTGTGATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAGGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAATTTGAGATTAATGAAGAGTGGGAAGTCAAGGAAGGCAAAGAAATTACTCAGCAGTGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTTAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGAAGAGACTCTAGACACTTTCTTTTTATCTGCCAACATCTATGTTTTATTTGCGCTGTTTGACCTTCAAGATGGTTTTATTGCCTTCTATATCTCAAATGGTGTCATTAATATTCATTTAAGATCAGCATATTGAATATCTATGGCCGTTGGCCCAGAAGATAAGGCATTCAGTTAATTTATCGATAGTCCTTGCTTTTACAATTCACTTTCACTTTCAAGTTTTGTCAAATTATTTAAGTTATCG

Coding sequence (CDS)

ATGGCAACTGAACTGAAAGCAGCTTCTGAGGAAGTGAAGGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAATTTGAGATTAATGAAGAGTGGGAAGTCAAGGAAGGCAAAGAAATTACTCAGCAGTGGGAAGATGACTGGGATGATGATGATGTTAATGATGACTTCTCGTTGCAGCTTAAGAGAGAATTGGAGAACAATGCTGAGAAAAAATGA

Protein sequence

MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK
Homology
[Close]
BLAST of ClCG08G009420 vs. Swiss-Prot
Match: SEM12_ARATH (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.0e-25
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]
BLAST of ClCG08G009420 vs. Swiss-Prot
Match: SEM11_ARATH (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-24
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1 

Query: 1  MATELKAASEEV-KVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAA+ EV K+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELENNAEKK 73
           QL++ELEN  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]
BLAST of ClCG08G009420 vs. Swiss-Prot
Match: DSS1_BOVIN (26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-10
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]
BLAST of ClCG08G009420 vs. Swiss-Prot
Match: DSS1_HUMAN (26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-10
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]
BLAST of ClCG08G009420 vs. Swiss-Prot
Match: DSS1_MOUSE (26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-10
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 

Query: 10 EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNA 69
          + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE + 
Sbjct: 6  QPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAELEKHG 65

Query: 70 EK 72
           K
Sbjct: 66 YK 66

[Close]
BLAST of ClCG08G009420 vs. TrEMBL
Match: A0A0A0KIG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358050 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.3e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]
BLAST of ClCG08G009420 vs. TrEMBL
Match: A0A0A0LU33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-29
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EEVK+DLFEDDDEFEEFEINEEWE+K EGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELE+N EKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]
BLAST of ClCG08G009420 vs. TrEMBL
Match: W9RJ80_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010934 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-28
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+EE K+DLFEDDDEFEEFEIN+EWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELENN +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]
BLAST of ClCG08G009420 vs. TrEMBL
Match: A0A067K7X0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-27
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEDVKMDLFEDDDEFEEFEINEEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE + EK
Sbjct: 61 QLRRELEKSTEK 72

[Close]
BLAST of ClCG08G009420 vs. TrEMBL
Match: A0A0B2P900_GLYSO (Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-27
Identity = 60/72 (83.33%), Postives = 68/72 (94.44%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEW+ K EGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATEPKAATEDVKIDLFEDDDEFEEFEINEEWDDKEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE+N EK
Sbjct: 61 QLRRELESNTEK 72

[Close]
BLAST of ClCG08G009420 vs. TAIR10
Match: AT5G45010.1 (AT5G45010.1 DSS1 homolog on chromosome V)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-26
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELENNAEKK 73
          QLK+ELEN +EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]
BLAST of ClCG08G009420 vs. TAIR10
Match: AT1G64750.3 (AT1G64750.3 deletion of SUV3 suppressor 1(I))

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-20
Identity = 55/115 (47.83%), Postives = 62/115 (53.91%), Query Frame = 1 

Query: 1   MATELKAASEEV-KVDLFEDDDEFEEFEINE----------------------------- 60
           MA E KAA+ EV K+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELENNAEKK 73
                       +W E +E KE++QQWEDDWDDDDVNDDFS QL++ELEN  +KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]
BLAST of ClCG08G009420 vs. NCBI nr
Match: gi|449452971|ref|XP_004144232.1| (PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 4.7e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60
          MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ
Sbjct: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQ 60

Query: 61 LKRELENNAEKK 73
          LKRELENNAEKK
Sbjct: 61 LKRELENNAEKK 72

[Close]
BLAST of ClCG08G009420 vs. NCBI nr
Match: gi|449469525|ref|XP_004152470.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-29
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EEVK+DLFEDDDEFEEFEINEEWE+K EGKEITQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATESKTATEEVKIDLFEDDDEFEEFEINEEWEMKEEGKEITQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELE+N EKK
Sbjct: 61 QLRRELESNTEKK 73

[Close]
BLAST of ClCG08G009420 vs. NCBI nr
Match: gi|703122731|ref|XP_010102642.1| (hypothetical protein L484_010934 [Morus notabilis])

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-28
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+EE K+DLFEDDDEFEEFEIN+EWE K EGKE+TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATEPKAATEEAKIDLFEDDDEFEEFEINQEWEDKEEGKEVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEKK 73
          QL+RELENN +KK
Sbjct: 61 QLRRELENNQDKK 73

[Close]
BLAST of ClCG08G009420 vs. NCBI nr
Match: gi|702257149|ref|XP_010028198.1| (PREDICTED: probable 26S proteasome complex subunit sem1-1 [Eucalyptus grandis])

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-28
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWEVK-EGKEITQQWEDDWDDDDVNDDFSL 60
          MATE K A+EE K+DLFEDDDEFEEFEINEEWE K EGK++TQQWEDDWDDDDVNDDFSL
Sbjct: 1  MATETKPATEEAKMDLFEDDDEFEEFEINEEWEDKEEGKDVTQQWEDDWDDDDVNDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELENNAEK
Sbjct: 61 QLRRELENNAEK 72

[Close]
BLAST of ClCG08G009420 vs. NCBI nr
Match: gi|1012230212|ref|XP_015938169.1| (PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Arachis duranensis])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 59/72 (81.94%), Postives = 69/72 (95.83%), Query Frame = 1 

Query: 1  MATELKAASEEVKVDLFEDDDEFEEFEINEEWE-VKEGKEITQQWEDDWDDDDVNDDFSL 60
          MATE KAA+E+VK+DLFEDDDEFEEFEINEEW+ ++EGKE+TQQWEDDWDDDDV+DDFSL
Sbjct: 1  MATETKAATEDVKIDLFEDDDEFEEFEINEEWDAIEEGKEVTQQWEDDWDDDDVSDDFSL 60

Query: 61 QLKRELENNAEK 72
          QL+RELE+N EK
Sbjct: 61 QLRRELESNTEK 72

The following BLAST results are available for this feature:
BLAST of ClCG08G009420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SEM12_ARATH4.0e-2576.71Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana GN=DSS1(V) PE=1 SV=... [more]
SEM11_ARATH1.2e-2474.32Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana GN=DSS1(I) PE=1... [more]
DSS1_BOVIN6.2e-1050.0026S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1[more]
DSS1_HUMAN6.2e-1050.0026S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1[more]
DSS1_MOUSE6.2e-1050.0026S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1[more]
BLAST of ClCG08G009420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIG9_CUCSA3.3e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358050 PE=4 SV=1[more]
A0A0A0LU33_CUCSA1.9e-2987.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046000 PE=4 SV=1[more]
W9RJ80_9ROSA1.6e-2884.93Uncharacterized protein OS=Morus notabilis GN=L484_010934 PE=4 SV=1[more]
A0A067K7X0_JATCU2.3e-2784.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11494 PE=4 SV=1[more]
A0A0B2P900_GLYSO2.3e-2783.33Putative 26S proteasome complex subunit sem1-1 OS=Glycine soja GN=glysoja_044941... [more]
BLAST of ClCG08G009420 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45010.12.2e-2676.71 DSS1 homolog on chromosome V[more]
AT1G64750.37.0e-2047.83 deletion of SUV3 suppressor 1(I)[more]
BLAST of ClCG08G009420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452971|ref|XP_004144232.1|4.7e-34100.00PREDICTED: probable 26S proteasome complex subunit sem1-2 [Cucumis sativus][more]
gi|449469525|ref|XP_004152470.1|2.7e-2987.67PREDICTED: probable 26S proteasome complex subunit sem1-1 [Cucumis sativus][more]
gi|703122731|ref|XP_010102642.1|2.3e-2884.93hypothetical protein L484_010934 [Morus notabilis][more]
gi|702257149|ref|XP_010028198.1|3.9e-2886.11PREDICTED: probable 26S proteasome complex subunit sem1-1 [Eucalyptus grandis][more]
gi|1012230212|ref|XP_015938169.1|1.1e-2781.94PREDICTED: protein DSS1 HOMOLOG ON CHROMOSOME V-like [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007834DSS1_SEM1
Vocabulary: Cellular Component
TermDefinition
GO:0008541proteasome regulatory particle, lid subcomplex
Vocabulary: Biological Process
TermDefinition
GO:0006406mRNA export from nucleus
GO:0043248proteasome assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0043248 proteasome assembly
cellular_component GO:0008541 proteasome regulatory particle, lid subcomplex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G009420.1ClCG08G009420.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007834DSS1/SEM1PFAMPF05160DSS1_SEM1coord: 10..66
score: 4.9
IPR007834DSS1/SEM1SMARTSM01385DSS1_SEM1_2coord: 9..67
score: 1.1
NoneNo IPR availablePANTHERPTHR1677126 PROTEASOME COMPLEX SUBUNIT DSS1coord: 1..71
score: 4.5
NoneNo IPR availablePANTHERPTHR16771:SF1SUBFAMILY NOT NAMEDcoord: 1..71
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G009420Bhi04G001241Wax gourdwcgwgoB626
ClCG08G009420Carg17646Silver-seed gourdcarwcgB0129
ClCG08G009420CsaV3_6G031560Cucumber (Chinese Long) v3cucwcgB514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G009420Cucumber (Gy14) v2cgybwcgB454
ClCG08G009420Cucumber (Gy14) v2cgybwcgB463
ClCG08G009420Melon (DHL92) v3.6.1medwcgB289
ClCG08G009420Melon (DHL92) v3.6.1medwcgB291
ClCG08G009420Silver-seed gourdcarwcgB0205
ClCG08G009420Silver-seed gourdcarwcgB0342
ClCG08G009420Watermelon (97103) v2wcgwmbB336
ClCG08G009420Wax gourdwcgwgoB639
ClCG08G009420Cucumber (Gy14) v1cgywcgB079
ClCG08G009420Cucurbita maxima (Rimu)cmawcgB175
ClCG08G009420Cucurbita maxima (Rimu)cmawcgB710
ClCG08G009420Cucurbita moschata (Rifu)cmowcgB166
ClCG08G009420Cucurbita moschata (Rifu)cmowcgB714
ClCG08G009420Wild cucumber (PI 183967)cpiwcgB522
ClCG08G009420Wild cucumber (PI 183967)cpiwcgB532
ClCG08G009420Cucumber (Chinese Long) v2cuwcgB496
ClCG08G009420Melon (DHL92) v3.5.1mewcgB296
ClCG08G009420Melon (DHL92) v3.5.1mewcgB298
ClCG08G009420Watermelon (97103) v1wcgwmB400
ClCG08G009420Cucurbita pepo (Zucchini)cpewcgB123
ClCG08G009420Cucurbita pepo (Zucchini)cpewcgB756
ClCG08G009420Bottle gourd (USVL1VR-Ls)lsiwcgB438