ClCG08G006980 (gene) Watermelon (Charleston Gray)

NameClCG08G006980
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 19369607 .. 19370101 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCTAGTTCATCAAAGATTCAAGTCCCCTCCATGTCAATTCATCATTTCATGACTGTTATATGGATGCTGCAGCAAACAATGCCAAGAAAGGAAAATGTAACTTTGAACTTAACTAAACCAATTTTGCTTCTTCGTCTTCCCACCTGTTAGTGTATCAACAGTAAACATGACTCTAAACTAGTCAACTTTAAGACCAAAAAGGCTTGACTAAATAAAGGTATCTCCATAAGAACATTTTTTCTTTTTCATGAGAAGATAAACAATTGTTTCCTAAGCAAGAATCCCCAGAGCAATCGAGCGAGTTCAAGCCCTTCAAGTAGCAGGGAATTTGGGTATTCTATCAAAATTCAGATTGCCGAGATTTGCACAGATCTGCTAGAAGTAACAGTAGATGATGAAGAAATGTGTGTTGTAGGATCAGTATACACGAACAACCTCAGAGTCAGAGATGTTACTTCTCTAACTCTAACCTCTCTATTTACAAAATGA

mRNA sequence

ATGAAGTCTAGTTCATCAAAGATTCAAGTCCCCTCCATGTCAATTCATCATTTCATGACTGTTATATGGATGCTGCAGCAAACAATGCCAAGAAAGGAAAATATAAACAATTGTTTCCTAAGCAAGAATCCCCAGAGCAATCGAGCGAGTTCAAGCCCTTCAAGTAGCAGGGAATTTGGGTATTCTATCAAAATTCAGATTGCCGAGATTTGCACAGATCTGCTAGAAGTAACAGTAGATGATGAAGAAATGTGTGTTGTAGGATCAGTATACACGAACAACCTCAGAGTCAGAGATGTTACTTCTCTAACTCTAACCTCTCTATTTACAAAATGA

Coding sequence (CDS)

ATGAAGTCTAGTTCATCAAAGATTCAAGTCCCCTCCATGTCAATTCATCATTTCATGACTGTTATATGGATGCTGCAGCAAACAATGCCAAGAAAGGAAAATATAAACAATTGTTTCCTAAGCAAGAATCCCCAGAGCAATCGAGCGAGTTCAAGCCCTTCAAGTAGCAGGGAATTTGGGTATTCTATCAAAATTCAGATTGCCGAGATTTGCACAGATCTGCTAGAAGTAACAGTAGATGATGAAGAAATGTGTGTTGTAGGATCAGTATACACGAACAACCTCAGAGTCAGAGATGTTACTTCTCTAACTCTAACCTCTCTATTTACAAAATGA

Protein sequence

MKSSSSKIQVPSMSIHHFMTVIWMLQQTMPRKENINNCFLSKNPQSNRASSSPSSSREFGYSIKIQIAEICTDLLEVTVDDEEMCVVGSVYTNNLRVRDVTSLTLTSLFTK
BLAST of ClCG08G006980 vs. TrEMBL
Match: A0A0A0K9J1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057090 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1

Query: 36 NNCFLSKNPQSNRASSSPSSSREFGYSIKIQIAEICTDLLEVTVDDEEMCV 87
          N CFLS NP S RA+SS SSS       ++QI EICTD+LE+T DDEEMC+
Sbjct: 28 NLCFLSNNPWSGRANSSASSSSILS---ELQIVEICTDMLEITWDDEEMCL 75

BLAST of ClCG08G006980 vs. NCBI nr
Match: gi|700190939|gb|KGN46143.1| (hypothetical protein Csa_6G057090 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1

Query: 36 NNCFLSKNPQSNRASSSPSSSREFGYSIKIQIAEICTDLLEVTVDDEEMCV 87
          N CFLS NP S RA+SS SSS       ++QI EICTD+LE+T DDEEMC+
Sbjct: 28 NLCFLSNNPWSGRANSSASSSSILS---ELQIVEICTDMLEITWDDEEMCL 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K9J1_CUCSA1.2e-0660.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G057090 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700190939|gb|KGN46143.1|1.7e-0660.78hypothetical protein Csa_6G057090 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006980.1ClCG08G006980.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None