ClCG08G006820 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G006820
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 19199304 .. 19199801 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGAAGAAAATTTCAAATGGAGCAACACGTTTGTACTTACTCGACATAGAGTCCATGACGATTGGGTAAAAATAATGGAATCCCTTCGAGATTCCAATGATGTCATTGATGCATTTAACCCCTTCCATGCGAATAAGGTGTTAATATCCGTAAGAGAGAAAGTTCAGGCTCGTCTGTTATGCCTAAACAAGAGATGGGTTACTATAGGACCTTTCATTGTGAAATTCAAAAAATGGAGTTCACAACTACATGCCCATTCTAAGCTTGTTCCTAGTTATGGTGGCTGGCTTAAGTTTAGAGGAATTCTATTAAACGCCTGAAACTTATCCACTTCTAAACAAATAGGGGAAGCTTGTGGAGGCTTTGTTGATGTCAATTTCACTTGGAGAAAGCTTGACCTTATGGAAGCTATCATACGAGTTAAGGAAAAATATTGTGGTTTTGTGTCGACATTGATCAGAATTGTGGATGAGGAGGATTTCATATGGTGA

mRNA sequence

ATGGAAGAAGAAGAAAATTTCAAATGGAGCAACACGTTTGTACTTACTCGACATAGAGTCCATGACGATTGGGTAAAAATAATGGAATCCCTTCGAGATTCCAATGATGTCATTGATGCATTTAACCCCTTCCATGCGAATAAGGTGTTAATATCCGTAAGAGAGAAAGTTCAGGCTCGTCTGTTATGCCTAAACAAGAGATGGGTTACTATAGGACCTTTCATTGTGAAATTCAAAAAATGGAGTTCACAACTACATGCCCATTCTAAGCTTGTTCCTAGTTATGGGGAAGCTTGTGGAGGCTTTGTTGATGTCAATTTCACTTGGAGAAAGCTTGACCTTATGGAAGCTATCATACGAGTTAAGGAAAAATATTGTGGTTTTGTGTCGACATTGATCAGAATTGTGGATGAGGAGGATTTCATATGGTGA

Coding sequence (CDS)

ATGGAAGAAGAAGAAAATTTCAAATGGAGCAACACGTTTGTACTTACTCGACATAGAGTCCATGACGATTGGGTAAAAATAATGGAATCCCTTCGAGATTCCAATGATGTCATTGATGCATTTAACCCCTTCCATGCGAATAAGGTGTTAATATCCGTAAGAGAGAAAGTTCAGGCTCGTCTGTTATGCCTAAACAAGAGATGGGTTACTATAGGACCTTTCATTGTGAAATTCAAAAAATGGAGTTCACAACTACATGCCCATTCTAAGCTTGTTCCTAGTTATGGGGAAGCTTGTGGAGGCTTTGTTGATGTCAATTTCACTTGGAGAAAGCTTGACCTTATGGAAGCTATCATACGAGTTAAGGAAAAATATTGTGGTTTTGTGTCGACATTGATCAGAATTGTGGATGAGGAGGATTTCATATGGTGA

Protein sequence

MEEEENFKWSNTFVLTRHRVHDDWVKIMESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCLNKRWVTIGPFIVKFKKWSSQLHAHSKLVPSYGEACGGFVDVNFTWRKLDLMEAIIRVKEKYCGFVSTLIRIVDEEDFIW

Homology

[Close]

BLAST of ClCG08G006820 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-27
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 1


Query: 12  TFVLTRHRVHDDWVKIMESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCLNKRWVTI 71
           T VLTR   HDDW KI+E L +  D   ++ PFHANK LI  ++  QA L+C NK W T+
Sbjct: 131 TVVLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTV 190

Query: 72  GPFIVKFKKWSSQLHAHSKLVPSY----------------------GEACGGFVDVNFTW 131
           G F VKF++W+ + HA  K VPSY                      G+ACGGF++V    
Sbjct: 191 GRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKET 250

Query: 132 RKL-DLMEAIIRVKEKYCGFVSTLIRIVDEED 141
           R+L DL+EA IRVK+ Y GF+   I+++D+E+
Sbjct: 251 RELTDLIEASIRVKDNYSGFIPAFIKLIDKEE 282

[Close]

BLAST of ClCG08G006820 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-16
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = 1


Query: 5   ENFKWSNTFVLTRHRVHDDWVKIMESLRDSNDVID-AFNPFHANKVLISVREKVQARLLC 64
           E F WS T V+T+   HDDW KIME L++  D ++  +  FHA K ++ + EK    LLC
Sbjct: 166 ETFDWSKTEVITKRCFHDDWKKIMEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLC 225

Query: 65  LNKRWVTIGPFIVKFKKWSSQLHAHSKLVPSY----------------------GEACGG 106
            N+ W TIG F VKF+ W+   HA  K++ SY                      GE CGG
Sbjct: 226 KNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVGWVKFKGIPLHAWNYSSFYQIGEVCGG 285

[Close]

BLAST of ClCG08G006820 vs. TrEMBL
Match: A0A0A0K120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 5   ENFKWSNTFVLTRHRVHDDWVKIMESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCL 64
           ++  W+ T V+TR   HDDW KIM  L++  D+   + PFHA KV +++ +K    LLC 
Sbjct: 74  DSLDWTKTVVITRRYFHDDWKKIMAKLQEQLDLNITYKPFHAEKVAVTIEDKNLVNLLCK 133

Query: 65  NKRWVTIGPFIVKFKKWSSQLHAHSKLVPSYG 97
           N+ W T+G + VKF+  +   HA  K +PSYG
Sbjct: 134 NRGWTTVGKYYVKFEASNIAKHASPKCLPSYG 165

[Close]

BLAST of ClCG08G006820 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 40/135 (29.63%), Postives = 70/135 (51.85%), Query Frame = 1


Query: 28  MESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCLNKRWVTIGPFIVKFKKWSSQLHA 87
           M  L++  +    +  FHA K L+S   K QA ++C N+ W  +  F +KF++W++  H 
Sbjct: 1   MRKLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60

Query: 88  HSKLVPSY----------------------GEACGGFVDVNFTWRK-LDLMEAIIRVKEK 140
             KLVPSY                      GEACG F+++    +K +++ +A+++VKE 
Sbjct: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKEN 120

[Close]

BLAST of ClCG08G006820 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 1


Query: 12  TFVLTRHRVHDDWVKIMESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCLNKRWVTI 71
           T VLTR   HDDW KI+E L +  D   ++ PFHANK LI  ++  QA L+C NK W T+
Sbjct: 131 TVVLTRRYFHDDWEKIVEKLNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTV 190

Query: 72  GPFIVKFKKWSSQLHAHSKLVPSY----------------------GEACGGFVDVNFTW 131
           G F VKF++W+ + HA  K VPSY                      G+ACGGF++V    
Sbjct: 191 GRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKET 250

Query: 132 RKL-DLMEAIIRVKEKYCGFVSTLIRIVDEED 141
           R+L DL+EA IRVK+ Y GF+   I+++D+E+
Sbjct: 251 RELTDLIEASIRVKDNYSGFIPAFIKLIDKEE 282

[Close]

BLAST of ClCG08G006820 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-20
Identity = 56/152 (36.84%), Postives = 79/152 (51.97%), Query Frame = 1


Query: 11  NTFVLTRHRVHDDWVKIMESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCLNKRWVT 70
           NT V+ R   HDDW KI+++LR   +    +N FHA+K L+     + A LLC NK W T
Sbjct: 203 NTVVIIRRFFHDDWYKILQNLRKQTEESFTYNAFHADKALVHFSSSIPANLLCQNKGWTT 262

Query: 71  IGPFIVKFKKWSSQLHAHSKLVPSY----------------------GEACGGFVDVNFT 130
           +G + V+F+KW    HA  KL+PSY                      G+ACGG + V   
Sbjct: 263 VGKYSVRFEKWCPIQHATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEE 322

Query: 131 WRKL-DLMEAIIRVKEKYCGFVSTLIRIVDEE 140
            R   +L+EA I+++  Y GF+   +RI D E
Sbjct: 323 TRSAKNLIEAKIKIRYNYSGFLPANVRIFDNE 354

[Close]

BLAST of ClCG08G006820 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 49/124 (39.52%), Postives = 65/124 (52.42%), Query Frame = 1


Query: 5   ENFKWSNTFVLTRHRVHDDWVKIMESLRDSNDVID-AFNPFHANKVLISVREKVQARLLC 64
           E F WS T V+T+   HDDW KIME L++  D ++  +  FHA K ++ + EK    LLC
Sbjct: 166 ETFDWSKTEVITKRCFHDDWKKIMEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLC 225

Query: 65  LNKRWVTIGPFIVKFKKWSSQLHAHSKLVPSY----------------------GEACGG 106
            N+ W TIG F VKF+ W+   HA  K++ SY                      GE CGG
Sbjct: 226 KNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVGWVKFKGIPLHAWNYSSFYQIGEVCGG 285

[Close]

BLAST of ClCG08G006820 vs. NCBI nr
Match: gi|700187915|gb|KGN43148.1| (hypothetical protein Csa_7G004025 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 5   ENFKWSNTFVLTRHRVHDDWVKIMESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCL 64
           ++  W+ T V+TR   HDDW KIM  L++  D+   + PFHA KV +++ +K    LLC 
Sbjct: 74  DSLDWTKTVVITRRYFHDDWKKIMAKLQEQLDLNITYKPFHAEKVAVTIEDKNLVNLLCK 133

Query: 65  NKRWVTIGPFIVKFKKWSSQLHAHSKLVPSYG 97
           N+ W T+G + VKF+  +   HA  K +PSYG
Sbjct: 134 NRGWTTVGKYYVKFEASNIAKHASPKCLPSYG 165

[Close]

BLAST of ClCG08G006820 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 40/135 (29.63%), Postives = 70/135 (51.85%), Query Frame = 1


Query: 28  MESLRDSNDVIDAFNPFHANKVLISVREKVQARLLCLNKRWVTIGPFIVKFKKWSSQLHA 87
           M  L++  +    +  FHA K L+S   K QA ++C N+ W  +  F +KF++W++  H 
Sbjct: 1   MRKLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60

Query: 88  HSKLVPSY----------------------GEACGGFVDVNFTWRK-LDLMEAIIRVKEK 140
             KLVPSY                      GEACG F+++    +K +++ +A+++VKE 
Sbjct: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKEN 120

The following BLAST results are available for this feature:

BLAST of ClCG08G006820 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	7.7e-27	43.42	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KNC5_CUCSA	2.1e-16	39.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1	[more]
A0A0A0K120_CUCSA	8.8e-15	41.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	2.2e-13	29.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]

BLAST of ClCG08G006820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135793\|gb\|ADN33672.1\|	1.1e-26	43.42	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	7.7e-20	36.84	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|700195958\|gb\|KGN51135.1\|	3.0e-16	39.52	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
gi\|700187915\|gb\|KGN43148.1\|	1.3e-14	41.30	hypothetical protein Csa_7G004025 [Cucumis sativus]	[more]
gi\|700192460\|gb\|KGN47664.1\|	3.1e-13	29.63	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G006820.1	ClCG08G006820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G006820	Silver-seed gourd	carwcgB0066
ClCG08G006820	Silver-seed gourd	carwcgB0803
ClCG08G006820	Cucumber (Chinese Long) v3	cucwcgB529
ClCG08G006820	Cucumber (Chinese Long) v3	cucwcgB602
ClCG08G006820	Watermelon (97103) v2	wcgwmbB336
ClCG08G006820	Wax gourd	wcgwgoB624
ClCG08G006820	Cucurbita maxima (Rimu)	cmawcgB273
ClCG08G006820	Cucurbita maxima (Rimu)	cmawcgB678
ClCG08G006820	Cucurbita moschata (Rifu)	cmowcgB265
ClCG08G006820	Cucurbita moschata (Rifu)	cmowcgB680
ClCG08G006820	Melon (DHL92) v3.5.1	mewcgB301
ClCG08G006820	Watermelon (97103) v1	wcgwmB400
ClCG08G006820	Cucurbita pepo (Zucchini)	cpewcgB180
ClCG08G006820	Cucurbita pepo (Zucchini)	cpewcgB415
ClCG08G006820	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G006820	Melon (DHL92) v3.6.1	medwcgB293