ClCG08G006720 (gene) Watermelon (Charleston Gray)

NameClCG08G006720
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 19142441 .. 19143197 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAACGTATCAATGCATTCATCTCTTGCACCTAAGTTGGATGAGCCAAGGGATTTCCTTCAATGGGCTGAAGAAATGCAATTCTTGTAAAGCATTTGGTGATAGCATAACCAATTCTTCTCAAGTATCAGTACTATCTAGCTGCCAATTCTCTTTCACACGAAATGACCTAACTGAATTAAAATTGATTTGGGAGGCATTGACACCCGAGCGTAGATTCATATTCTCAAAGAAGTACGAACATATAGCAGAGTTGATGTATATACTAGTGAATTACTTTGCCTTGACAGCTATAATTCATATCTGGGATCCAACATATGGTTGTTTCAAGTTTAGATAGTGTAATGTATTGCCAACCATTAAAGAATATCAGGCTATGCTGAATATTCCCGAAAGGGAAAGAGACATTGTTTATTGCTTCAATCCTAAGCAAACAGCAAGGAGAACACTATTAAAGTTTTTAGAAAACGTCCATGCCACAGATATCCAAAAGCATATGAAAATTAAGGGCGGGAAGAGGAAAATGTGTCATTGTTGGTTTTGTAACAGATGTGGTTCAAACAGTTTATGAGAGTTTGATTTTTGGTATGATGTTGAAGATTGCCAAGGGAAAAAATGCGGAGCAGTATATGCTTGGAAATCTGTGAGGAAGATAAAAGACAAAGGACATTATGAAGGAGTTACCAGTAAATACGAGGCATGGCATGCAAACAGAAGGAAGACTATGGTAAGTTTTAGCCTAAGGATGATTTGA

mRNA sequence

ATGTCCAACGTATCAATGCATTCATCTCTTGCACCTAAGTTGGATGAGCCAAGGGATTTCCTTCAATGGGCTGAAGAAATGCAATTCTTATTCATATTCTCAAAGAAGTACGAACATATAGCAGAGTTGATGTATATACTAGTGAATTACTTTGCCTTGACAGCTATAATTCATATCTGGGATCCAACATATGAATATCAGGCTATGCTGAATATTCCCGAAAGGGAAAGAGACATTGTTTATTGCTTCAATCCTAAGCAAACAGCAAGGAGAACACTATTAAAGTTTTTAGAAAACGTCCATGCCACAGATATCCAAAAGCATATGAAAATTAAGGGCGGGAAGAGGAAAATGTGTCATTATTGCCAAGGGAAAAAATGCGGAGCAGTATATGCTTGGAAATCTGTGAGGAAGATAAAAGACAAAGGACATTATGAAGGAGTTACCAGTAAATACGAGGCATGGCATGCAAACAGAAGGAAGACTATGGTAAGTTTTAGCCTAAGGATGATTTGA

Coding sequence (CDS)

ATGTCCAACGTATCAATGCATTCATCTCTTGCACCTAAGTTGGATGAGCCAAGGGATTTCCTTCAATGGGCTGAAGAAATGCAATTCTTATTCATATTCTCAAAGAAGTACGAACATATAGCAGAGTTGATGTATATACTAGTGAATTACTTTGCCTTGACAGCTATAATTCATATCTGGGATCCAACATATGAATATCAGGCTATGCTGAATATTCCCGAAAGGGAAAGAGACATTGTTTATTGCTTCAATCCTAAGCAAACAGCAAGGAGAACACTATTAAAGTTTTTAGAAAACGTCCATGCCACAGATATCCAAAAGCATATGAAAATTAAGGGCGGGAAGAGGAAAATGTGTCATTATTGCCAAGGGAAAAAATGCGGAGCAGTATATGCTTGGAAATCTGTGAGGAAGATAAAAGACAAAGGACATTATGAAGGAGTTACCAGTAAATACGAGGCATGGCATGCAAACAGAAGGAAGACTATGGTAAGTTTTAGCCTAAGGATGATTTGA

Protein sequence

MSNVSMHSSLAPKLDEPRDFLQWAEEMQFLFIFSKKYEHIAELMYILVNYFALTAIIHIWDPTYEYQAMLNIPERERDIVYCFNPKQTARRTLLKFLENVHATDIQKHMKIKGGKRKMCHYCQGKKCGAVYAWKSVRKIKDKGHYEGVTSKYEAWHANRRKTMVSFSLRMI
BLAST of ClCG08G006720 vs. NCBI nr
Match: gi|659131250|ref|XP_008465588.1| (PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query: 122 CQGKKCGAVYAWKSVRKIKDKGHYEGVTSKYEAWHANRRKTMVSFSLRMI 172
           CQGKK  AV AWKS+RKIKDKGHYEGVTS+YE W ANRR  ++  S  ++
Sbjct: 50  CQGKKRQAVCAWKSIRKIKDKGHYEGVTSEYETWQANRRNNIIDISREVV 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659131250|ref|XP_008465588.1|4.6e-1166.00PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006720.1ClCG08G006720.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None