ClCG08G006690 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G006690
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 19123901 .. 19124155 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCGGCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATGACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCGGCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATGACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTCTGGGAAATTGCTTCCATTTATTTTCTCCATTCTCATTGGATTGATATTCTTAAATCTGCCGTCAAAATTTACAGCACAAAACGTTCATTCCCCACCAGCTCGGCTTATAACGCCACCGCCACCTCCAAACAATAAGCAATACACTGTGAAGTCATGGCGGAGGCTTCAGGCGCCGCCATCAAGGCCAGAATCCGATCACCAATGGCCAAATGACCCCGTCCGTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQAPPSRPESDHQWPNDPVRKSPPPPF

Homology

[Close]

BLAST of ClCG08G006690 vs. TrEMBL
Match: A0A0A0KF84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G337520 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQA 60
          MGS KL  FIFS+LI LIFLNL SKF AQN+HS       P PP NNKQ+T K W  L  
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNLHSS-----LPRPPANNKQFTEKPWESLLR 60

Query: 61 PPSRPE-----SDHQWPNDPVRKSPPPPF 85
          PPSRP      SDHQWPN P+R SPPPPF
Sbjct: 61 PPSRPPSRPPGSDHQWPNQPIRISPPPPF 84

[Close]

BLAST of ClCG08G006690 vs. NCBI nr
Match: gi|700192265|gb|KGN47469.1| (hypothetical protein Csa_6G337520 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-21
Identity = 56/89 (62.92%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1  MGSGKLLPFIFSILIGLIFLNLPSKFTAQNVHSPPARLITPPPPPNNKQYTVKSWRRLQA 60
          MGS KL  FIFS+LI LIFLNL SKF AQN+HS       P PP NNKQ+T K W  L  
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNLHSS-----LPRPPANNKQFTEKPWESLLR 60

Query: 61 PPSRPE-----SDHQWPNDPVRKSPPPPF 85
          PPSRP      SDHQWPN P+R SPPPPF
Sbjct: 61 PPSRPPSRPPGSDHQWPNQPIRISPPPPF 84

The following BLAST results are available for this feature:

BLAST of ClCG08G006690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF84_CUCSA	2.8e-21	62.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G337520 PE=4 SV=1	[more]

BLAST of ClCG08G006690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192265\|gb\|KGN47469.1\|	4.1e-21	62.92	hypothetical protein Csa_6G337520 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G006690.1	ClCG08G006690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G006690	Cla97C08G149450	Watermelon (97103) v2	wcgwmbB336

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G006690	Silver-seed gourd	carwcgB0066
ClCG08G006690	Silver-seed gourd	carwcgB0803
ClCG08G006690	Cucumber (Chinese Long) v3	cucwcgB524
ClCG08G006690	Cucumber (Chinese Long) v3	cucwcgB527
ClCG08G006690	Cucumber (Chinese Long) v3	cucwcgB602
ClCG08G006690	Wax gourd	wcgwgoB624
ClCG08G006690	Cucurbita maxima (Rimu)	cmawcgB273
ClCG08G006690	Cucurbita maxima (Rimu)	cmawcgB678
ClCG08G006690	Cucurbita moschata (Rifu)	cmowcgB265
ClCG08G006690	Cucurbita moschata (Rifu)	cmowcgB680
ClCG08G006690	Melon (DHL92) v3.5.1	mewcgB301
ClCG08G006690	Watermelon (97103) v1	wcgwmB400
ClCG08G006690	Cucurbita pepo (Zucchini)	cpewcgB180
ClCG08G006690	Cucurbita pepo (Zucchini)	cpewcgB415
ClCG08G006690	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G006690	Cucumber (Gy14) v2	cgybwcgB466
ClCG08G006690	Melon (DHL92) v3.6.1	medwcgB293