ClCG08G006660 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G006660
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	leucine-rich repeat/extensin 1 LENGTH=744
Location	CG_Chr08 : 19098340 .. 19098627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTGCAAAATTGCCTTCCTTTATTTTCTCCCTTCTCATTGCATTGATATTCTTAAATCTGCCATCAAAATTTACAGCACAAAACGTTCCTTCCCCACCAGCTCGGTCCATAGTTCCTCATTTGCATGTAATATATAGATCGCCGCTACCGGCACCGCCGAACAATAAGCAAAACACTGAGAAGTCACAGCGGAGCCTGCCGCCACCGCCACCGCCAAGTCCAGGACCCGGTCACCAATGGCCAAATGAAGCCGTCCGTAAATCGCCTCCACCTCCTTCCTAA

mRNA sequence

ATGGATTCTGCAAAATTGCCTTCCTTTATTTTCTCCCTTCTCATTGCATTGATATTCTTAAATCTGCCATCAAAATTTACAGCACAAAACGTTCCTTCCCCACCAGCTCGGTCCATAGTTCCTCATTTGCATGTAATATATAGATCGCCGCTACCGGCACCGCCGAACAATAAGCAAAACACTGAGAAGTCACAGCGGAGCCTGCCGCCACCGCCACCGCCAAGTCCAGGACCCGGTCACCAATGGCCAAATGAAGCCGTCCGTAAATCGCCTCCACCTCCTTCCTAA

Coding sequence (CDS)

ATGGATTCTGCAAAATTGCCTTCCTTTATTTTCTCCCTTCTCATTGCATTGATATTCTTAAATCTGCCATCAAAATTTACAGCACAAAACGTTCCTTCCCCACCAGCTCGGTCCATAGTTCCTCATTTGCATGTAATATATAGATCGCCGCTACCGGCACCGCCGAACAATAAGCAAAACACTGAGAAGTCACAGCGGAGCCTGCCGCCACCGCCACCGCCAAGTCCAGGACCCGGTCACCAATGGCCAAATGAAGCCGTCCGTAAATCGCCTCCACCTCCTTCCTAA

Protein sequence

MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPPNNKQNTEKSQRSLPPPPPPSPGPGHQWPNEAVRKSPPPPS

Homology

[Close]

BLAST of ClCG08G006660 vs. Swiss-Prot
Match: EXTN_DAUCA (Extensin OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 36/99 (36.36%), Postives = 46/99 (46.46%), Query Frame = 1


Query: 4   AKLPSFIFSLLIALIFLNLPSKFTAQ---NVPSPPARSIVPHLHVIYRSPLPAPPNNKQN 63
           +K+ S I SLL+ L+ LNL S+ TA+   + P PP  S  P  H       P PP + ++
Sbjct: 8   SKMSSLIVSLLVVLVSLNLASETTAKYTYSSPPPPEHSPPPPEH------SPPPPYHYES 67

Query: 64  TEKSQRSLPPPPP-----PSPGPGHQWPNEAVRKSPPPP 95
               + S PPP P       P P H  P     +SPPPP
Sbjct: 68  PPPPKHSPPPPTPVYKYKSPPPPMHSPPPPYHFESPPPP 100

[Close]

BLAST of ClCG08G006660 vs. TrEMBL
Match: A0A0A0KF84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G337520 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPP-NNKQ 60
          M SAKLPSFIFSLLIALIFLNL SKF AQN+                 S LP PP NNKQ
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNL----------------HSSLPRPPANNKQ 60

Query: 61 NTEKSQRSL--PPPPPPS--PGPGHQWPNEAVRKSPPPP 95
           TEK   SL  PP  PPS  PG  HQWPN+ +R SPPPP
Sbjct: 61 FTEKPWESLLRPPSRPPSRPPGSDHQWPNQPIRISPPPP 83

[Close]

BLAST of ClCG08G006660 vs. NCBI nr
Match: gi|700192265|gb|KGN47469.1| (hypothetical protein Csa_6G337520 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 1  MDSAKLPSFIFSLLIALIFLNLPSKFTAQNVPSPPARSIVPHLHVIYRSPLPAPP-NNKQ 60
          M SAKLPSFIFSLLIALIFLNL SKF AQN+                 S LP PP NNKQ
Sbjct: 1  MGSAKLPSFIFSLLIALIFLNLLSKFAAQNL----------------HSSLPRPPANNKQ 60

Query: 61 NTEKSQRSL--PPPPPPS--PGPGHQWPNEAVRKSPPPP 95
           TEK   SL  PP  PPS  PG  HQWPN+ +R SPPPP
Sbjct: 61 FTEKPWESLLRPPSRPPSRPPGSDHQWPNQPIRISPPPP 83

The following BLAST results are available for this feature:

BLAST of ClCG08G006660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXTN_DAUCA	4.2e-06	36.36	Extensin OS=Daucus carota PE=2 SV=1	[more]

BLAST of ClCG08G006660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF84_CUCSA	1.3e-17	59.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G337520 PE=4 SV=1	[more]

BLAST of ClCG08G006660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192265\|gb\|KGN47469.1\|	1.8e-17	59.60	hypothetical protein Csa_6G337520 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G006660.1	ClCG08G006660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G006660	Cla013842	Watermelon (97103) v1	wcgwmB400
ClCG08G006660	Cla97C08G149430	Watermelon (97103) v2	wcgwmbB336
ClCG08G006660	Bhi04G001397	Wax gourd	wcgwgoB624
ClCG08G006660	CsaV3_6G029700	Cucumber (Chinese Long) v3	cucwcgB524

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G006660	Cucurbita maxima (Rimu)	cmawcgB273
ClCG08G006660	Cucurbita maxima (Rimu)	cmawcgB678
ClCG08G006660	Cucurbita moschata (Rifu)	cmowcgB265
ClCG08G006660	Cucurbita moschata (Rifu)	cmowcgB680
ClCG08G006660	Melon (DHL92) v3.5.1	mewcgB301
ClCG08G006660	Cucurbita pepo (Zucchini)	cpewcgB180
ClCG08G006660	Cucurbita pepo (Zucchini)	cpewcgB415
ClCG08G006660	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G006660	Cucumber (Gy14) v2	cgybwcgB466
ClCG08G006660	Melon (DHL92) v3.6.1	medwcgB293
ClCG08G006660	Silver-seed gourd	carwcgB0066
ClCG08G006660	Silver-seed gourd	carwcgB0803
ClCG08G006660	Cucumber (Chinese Long) v3	cucwcgB527
ClCG08G006660	Cucumber (Chinese Long) v3	cucwcgB602