ClCG08G006570 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G006570
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 19021112 .. 19021483 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCAAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCAGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCAGTGGGGAGCCTGTCCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAA

mRNA sequence

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCAAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCAGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCAGTGGGGAGCCTGTCCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAA

Coding sequence (CDS)

ATGATGAGTTCACCAAAGTCCCGAAAGCGAAAGATGAAGAAGCCGCCACAGCCGCCGAGAGCCGCCAAAGCCCGGCCAAAGACGATTGAAGTGGACGAAGAACATGATTCCTTAGATTTTGGATACATAGTCCAACAACTCCTCACCGGCGATGGCAGCGAATCCATCTCCGACCACCCTTCTAGTTCTACATCTTCCAATCGTCGGGAAGAATCTGTGCCAGTGGGGAGCCTGTCCGAGCCCCATTTCTCTGCCGCCGGTTTCTCCAAACGCTTTCACATCGCGGCCGCTGCCACCGTCGCCAGAAGAAGATCTGAGTATTTACGATTATGGCGGTTGGGAAGAGCCGGCAGCGCCATACCCTTTTCTTAA

Protein sequence

MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGSESISDHPSSSTSSNRREESVPVGSLSEPHFSAAGFSKRFHIAAAATVARRRSEYLRLWRLGRAGSAIPFS
Homology
[Close]
BLAST of ClCG08G006570 vs. TrEMBL
Match: A0A0A0KF90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338060 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.4e-14
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 1  MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGSE--SISD 60
          M++SPKSRKRK+K PPQPPRA +A  KTIEV+E      FGY+V+QLL G GS   SI+D
Sbjct: 1  MLNSPKSRKRKLKTPPQPPRATRA--KTIEVEEPD---GFGYMVEQLLFGSGSSGGSITD 60

Query: 61 HPSSSTSSNRREESVPVGSLS 80
          HPSSS S+  R+E VP+G LS
Sbjct: 61 HPSSS-SNTPRDEYVPMGILS 75

[Close]
BLAST of ClCG08G006570 vs. NCBI nr
Match: gi|700192270|gb|KGN47474.1| (hypothetical protein Csa_6G338060 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 1  MMSSPKSRKRKMKKPPQPPRAAKARPKTIEVDEEHDSLDFGYIVQQLLTGDGSE--SISD 60
          M++SPKSRKRK+K PPQPPRA +A  KTIEV+E      FGY+V+QLL G GS   SI+D
Sbjct: 1  MLNSPKSRKRKLKTPPQPPRATRA--KTIEVEEPD---GFGYMVEQLLFGSGSSGGSITD 60

Query: 61 HPSSSTSSNRREESVPVGSLS 80
          HPSSS S+  R+E VP+G LS
Sbjct: 61 HPSSS-SNTPRDEYVPMGILS 75

The following BLAST results are available for this feature:
BLAST of ClCG08G006570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF90_CUCSA6.4e-1461.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338060 PE=4 SV=1[more]
BLAST of ClCG08G006570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192270|gb|KGN47474.1|9.2e-1461.73hypothetical protein Csa_6G338060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006570.1ClCG08G006570.1mRNA