ClCG08G006540 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G006540
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic
Location	CG_Chr08 : 19008592 .. 19008874 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATAGTCAACAAAGAGTACGAGCTGCAAAGTACATTGGTCAGGGTTTCATGATTACTTTATCTCATGCAAATCGTAGCCCAGAGAGGCGTGATGGAGACAAATCCTGCTATTCAATGATGGGGGAAGAGGAGAACCACCACAAATCTGAAAAATATAGCTCCATGACATCTGGGCAAGCGTCTAGTCGGCGGTGACACTATGAACAACTCCAATAGAGAGCTAGTACCGGTGGATCCACAAACAGGAGAAGACCCACGCGACTGGGGAGGAGGGTGA

mRNA sequence

ATGAATTATAGTCAACAAAGAGTACGAGCTGCAAAGTACATTGGTCAGGGTTTCATGATTACTTTATCTCATGCAAATCGTAGCCCAGAGAGGCTCGGCGGTGACACTATGAACAACTCCAATAGAGAGCTAGTACCGGTGGATCCACAAACAGGAGAAGACCCACGCGACTGGGGAGGAGGGTGA

Coding sequence (CDS)

ATGAATTATAGTCAACAAAGAGTACGAGCTGCAAAGTACATTGGTCAGGGTTTCATGATTACTTTATCTCATGCAAATCGTAGCCCAGAGAGGCTCGGCGGTGACACTATGAACAACTCCAATAGAGAGCTAGTACCGGTGGATCCACAAACAGGAGAAGACCCACGCGACTGGGGAGGAGGGTGA

Protein sequence

MNYSQQRVRAAKYIGQGFMITLSHANRSPERLGGDTMNNSNRELVPVDPQTGEDPRDWGGG

Homology

[Close]

BLAST of ClCG08G006540 vs. Swiss-Prot
Match: NDHI_RATCO (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Ratibida columnifera GN=ndhI PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 25/29 (86.21%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQ VRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. Swiss-Prot
Match: NDHI_BLEZA (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Blepharispermum zanguebaricum GN=ndhI PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 25/29 (86.21%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQ VRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. Swiss-Prot
Match: NDHI_RUDHI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rudbeckia hirta GN=ndhI PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 25/29 (86.21%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQ VRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. Swiss-Prot
Match: NDHI_ROJSU (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rojasianthe superba GN=ndhI PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 25/29 (86.21%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQ VRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. Swiss-Prot
Match: NDHI_ARNDE (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Arnica dealbata GN=ndhI PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-07
Identity = 25/29 (86.21%), Postives = 24/29 (82.76%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQ VRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQTVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. TrEMBL
Match: A0A0P0Q7F9_9ASTR (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Brickellia coulteri GN=ndhI PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQRVRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQRVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. TrEMBL
Match: A0A0P0Q784_9ASTR (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Brickellia filipes GN=ndhI PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQRVRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQRVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. TrEMBL
Match: A0A0P0Q7J3_9ASTR (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Brickellia diffusa GN=ndhI PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQRVRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQRVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. TrEMBL
Match: B2XWD1_9ASTR (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Richterago amplexifolia GN=ndhI PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-06
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQRVRAA+YIGQGFMITLSHANR P
Sbjct: 9  MNYGQQRVRAARYIGQGFMITLSHANRLP 37

[Close]

BLAST of ClCG08G006540 vs. TAIR10
Match: ATCG01090.1 (ATCG01090.1 NADPH dehydrogenases)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 23/29 (79.31%), Postives = 23/29 (79.31%), Query Frame = 1


Query: 1  MNYSQQRVRAAKYIGQGFMITLSHANRSP 30
          MNY QQ +RAA+YIGQGFMITLSH NR P
Sbjct: 9  MNYGQQTLRAARYIGQGFMITLSHTNRLP 37

The following BLAST results are available for this feature:

BLAST of ClCG08G006540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHI_RATCO	4.2e-07	86.21	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Ratibida columnifera ...	[more]
NDHI_BLEZA	4.2e-07	86.21	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Blepharispermum zangu...	[more]
NDHI_RUDHI	4.2e-07	86.21	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rudbeckia hirta GN=nd...	[more]
NDHI_ROJSU	4.2e-07	86.21	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rojasianthe superba G...	[more]
NDHI_ARNDE	4.2e-07	86.21	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Arnica dealbata GN=nd...	[more]

BLAST of ClCG08G006540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0P0Q7F9_9ASTR	9.3e-06	89.66	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Brickellia coulteri G...	[more]
A0A0P0Q784_9ASTR	9.3e-06	89.66	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Brickellia filipes GN...	[more]
A0A0P0Q7J3_9ASTR	9.3e-06	89.66	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Brickellia diffusa GN...	[more]
B2XWD1_9ASTR	9.3e-06	89.66	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Richterago amplexifol...	[more]

BLAST of ClCG08G006540 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01090.1	1.5e-07	79.31	ATCG01090.1 NADPH dehydrogenases	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G006540.1	ClCG08G006540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G006540	Cucumber (Gy14) v2	cgybwcgB466
ClCG08G006540	Melon (DHL92) v3.6.1	medwcgB293
ClCG08G006540	Silver-seed gourd	carwcgB0066
ClCG08G006540	Silver-seed gourd	carwcgB0803
ClCG08G006540	Cucumber (Chinese Long) v3	cucwcgB527
ClCG08G006540	Cucumber (Chinese Long) v3	cucwcgB602
ClCG08G006540	Watermelon (97103) v2	wcgwmbB336
ClCG08G006540	Wax gourd	wcgwgoB624
ClCG08G006540	Cucumber (Gy14) v1	cgywcgB080
ClCG08G006540	Cucurbita maxima (Rimu)	cmawcgB273
ClCG08G006540	Cucurbita maxima (Rimu)	cmawcgB678
ClCG08G006540	Cucurbita moschata (Rifu)	cmowcgB026
ClCG08G006540	Cucurbita moschata (Rifu)	cmowcgB265
ClCG08G006540	Cucurbita moschata (Rifu)	cmowcgB680
ClCG08G006540	Wild cucumber (PI 183967)	cpiwcgB534
ClCG08G006540	Cucumber (Chinese Long) v2	cuwcgB507
ClCG08G006540	Melon (DHL92) v3.5.1	mewcgB301
ClCG08G006540	Watermelon (97103) v1	wcgwmB400
ClCG08G006540	Cucurbita pepo (Zucchini)	cpewcgB180
ClCG08G006540	Cucurbita pepo (Zucchini)	cpewcgB415
ClCG08G006540	Cucurbita pepo (Zucchini)	cpewcgB710
ClCG08G006540	Bottle gourd (USVL1VR-Ls)	lsiwcgB439