ClCG08G006230 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G006230
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RING/U-box superfamily protein LENGTH=266
Location	CG_Chr08 : 18615335 .. 18616345 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACCCTAGAGCATTCATCCACCTTTTATTCCCCGAGTCCCTTCGCTCCACACTCATAGGAGCCACTGGGAGCGGGTGGTCTGTGACCTATGATTGCTTCCTCTTCAGCGCCAACCTCCACACCCTATTCCCCGGCGGTGTGACCGCCACGAATGGCTTCCTCATCCGCCTCCAACTCTCCCACCTTCTCAAACCTCTCTACATTCCACACTCTTCCTTTTTCTTGGACTCCTCCACCCAACTCCTCCTCCTCCCTCCCTCCTACTTCTCCTCCTACTCCGCCGCTCTAAAGTTCGTCCTCTACACCCTCTCCCACCTCGGCGTCCCCGACTCCAACCCCGACCCTCTTGCTCGTCTTATCTTCTCCTTCGCCAACTGCCACCACCTCTCCGCCACCAAATCCCTCGTCCCATTGTACATCTCTTTCACCTCCACCACTGTCCTTCGCAACCACACCGAGGCTGCCGACTGGGTCTATGGTGGCGCCCCTGAGTCCCAAGTGGTGAGGACATTGAGAATGACGTTTGAGTCCCTGAGAAGGCTGAAAGATGAGAGTTTTGATGGATCGTGCTTAATGAAGAGTTGTTGTAAAGAGGAGGAGGAGGAGAAGTGCATGGTGTGCTTGGAAGGGTTTGAAGAGGAAACGAATACAAAGTGTAGTGTAAGTCGGCTCTTGTGTTCTCATTTGTTTCATTTTCGGTGCGTTTCTCAATGGCTTAGTTTGGATCATCGCTGCCCGGTTTGCCGCTCTCCCATGCCCTGGGTGCACGCCTTCTTCCCCGACGCCGATGTTGACGCACGTTCTTCCTTTTCACGTAATTCCACTGCCACCTCTTATCTTGATCTCGACGACGACGTTGATAACGATGACGATGAAAGTAATAATTTCGTTGATGATCAATGCTACTCCTCCGGCACAGCTGAACCATCTGGGATTCTTACCAAACTAGGGTGCTTTCTTAAGAAAATCGTGCAAACTATCTTGATCTTAGACTCATTTTTTTAA

mRNA sequence

ATGTTGAACCCTAGAGCATTCATCCACCTTTTATTCCCCGAGTCCCTTCGCTCCACACTCATAGGAGCCACTGGGAGCGGGTGGTCTGTGACCTATGATTGCTTCCTCTTCAGCGCCAACCTCCACACCCTATTCCCCGGCGGTGTGACCGCCACGAATGGCTTCCTCATCCGCCTCCAACTCTCCCACCTTCTCAAACCTCTCTACATTCCACACTCTTCCTTTTTCTTGGACTCCTCCACCCAACTCCTCCTCCTCCCTCCCTCCTACTTCTCCTCCTACTCCGCCGCTCTAAAGTTCGTCCTCTACACCCTCTCCCACCTCGGCGTCCCCGACTCCAACCCCGACCCTCTTGCTCGTCTTATCTTCTCCTTCGCCAACTGCCACCACCTCTCCGCCACCAAATCCCTCGTCCCATTGTACATCTCTTTCACCTCCACCACTGTCCTTCGCAACCACACCGAGGCTGCCGACTGGGTCTATGGTGGCGCCCCTGAGTCCCAAGTGGTGAGGACATTGAGAATGACGTTTGAGTCCCTGAGAAGGCTGAAAGATGAGAGTTTTGATGGATCGTGCTTAATGAAGAGTTGTTGTAAAGAGGAGGAGGAGGAGAAGTGCATGGTGTGCTTGGAAGGGTTTGAAGAGGAAACGAATACAAAGTGTAGTGTAAGTCGGCTCTTGTGTTCTCATTTGTTTCATTTTCGGTGCGTTTCTCAATGGCTTAGTTTGGATCATCGCTGCCCGGTTTGCCGCTCTCCCATGCCCTGGGTGCACGCCTTCTTCCCCGACGCCGATGTTGACGCACGTTCTTCCTTTTCACGTAATTCCACTGCCACCTCTTATCTTGATCTCGACGACGACGTTGATAACGATGACGATGAAAGTAATAATTTCGTTGATGATCAATGCTACTCCTCCGGCACAGCTGAACCATCTGGGATTCTTACCAAACTAGGGTGCTTTCTTAAGAAAATCGTGCAAACTATCTTGATCTTAGACTCATTTTTTTAA

Coding sequence (CDS)

ATGTTGAACCCTAGAGCATTCATCCACCTTTTATTCCCCGAGTCCCTTCGCTCCACACTCATAGGAGCCACTGGGAGCGGGTGGTCTGTGACCTATGATTGCTTCCTCTTCAGCGCCAACCTCCACACCCTATTCCCCGGCGGTGTGACCGCCACGAATGGCTTCCTCATCCGCCTCCAACTCTCCCACCTTCTCAAACCTCTCTACATTCCACACTCTTCCTTTTTCTTGGACTCCTCCACCCAACTCCTCCTCCTCCCTCCCTCCTACTTCTCCTCCTACTCCGCCGCTCTAAAGTTCGTCCTCTACACCCTCTCCCACCTCGGCGTCCCCGACTCCAACCCCGACCCTCTTGCTCGTCTTATCTTCTCCTTCGCCAACTGCCACCACCTCTCCGCCACCAAATCCCTCGTCCCATTGTACATCTCTTTCACCTCCACCACTGTCCTTCGCAACCACACCGAGGCTGCCGACTGGGTCTATGGTGGCGCCCCTGAGTCCCAAGTGGTGAGGACATTGAGAATGACGTTTGAGTCCCTGAGAAGGCTGAAAGATGAGAGTTTTGATGGATCGTGCTTAATGAAGAGTTGTTGTAAAGAGGAGGAGGAGGAGAAGTGCATGGTGTGCTTGGAAGGGTTTGAAGAGGAAACGAATACAAAGTGTAGTGTAAGTCGGCTCTTGTGTTCTCATTTGTTTCATTTTCGGTGCGTTTCTCAATGGCTTAGTTTGGATCATCGCTGCCCGGTTTGCCGCTCTCCCATGCCCTGGGTGCACGCCTTCTTCCCCGACGCCGATGTTGACGCACGTTCTTCCTTTTCACGTAATTCCACTGCCACCTCTTATCTTGATCTCGACGACGACGTTGATAACGATGACGATGAAAGTAATAATTTCGTTGATGATCAATGCTACTCCTCCGGCACAGCTGAACCATCTGGGATTCTTACCAAACTAGGGTGCTTTCTTAAGAAAATCGTGCAAACTATCTTGATCTTAGACTCATTTTTTTAA

Protein sequence

MLNPRAFIHLLFPESLRSTLIGATGSGWSVTYDCFLFSANLHTLFPGGVTATNGFLIRLQLSHLLKPLYIPHSSFFLDSSTQLLLLPPSYFSSYSAALKFVLYTLSHLGVPDSNPDPLARLIFSFANCHHLSATKSLVPLYISFTSTTVLRNHTEAADWVYGGAPESQVVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMPWVHAFFPDADVDARSSFSRNSTATSYLDLDDDVDNDDDESNNFVDDQCYSSGTAEPSGILTKLGCFLKKIVQTILILDSFF

Homology

[Close]

BLAST of ClCG08G006230 vs. Swiss-Prot
Match: R111A_XENLA (E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis GN=rnf111-a PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 199 KEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
           +E+ EEKC +CL   EE  +    V RL C HLFH  CV QWL  + +CP+CR
Sbjct: 864 EEDTEEKCTICLSILEEGED----VRRLPCMHLFHQVCVDQWLITNKKCPICR 912

[Close]

BLAST of ClCG08G006230 vs. Swiss-Prot
Match: R111B_XENLA (E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 199 KEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
           +E+ EEKC +CL   EE  +    V RL C HLFH  CV QWL  + +CP+CR
Sbjct: 900 EEDTEEKCTICLSILEEGED----VRRLPCMHLFHQVCVDQWLITNKKCPICR 948

[Close]

BLAST of ClCG08G006230 vs. Swiss-Prot
Match: R111C_XENLA (E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 199 KEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
           +E+ EEKC +CL   EE  +    V RL C HLFH  CV QWL  + +CP+CR
Sbjct: 908 EEDTEEKCTICLSILEEGED----VRRLPCMHLFHQVCVDQWLITNKKCPICR 956

[Close]

BLAST of ClCG08G006230 vs. Swiss-Prot
Match: RN111_XENTR (E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 199 KEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
           +E+ EEKC +CL   EE  +    V RL C HLFH  CV QWL  + +CP+CR
Sbjct: 895 EEDTEEKCTICLSILEEGED----VRRLPCMHLFHQVCVDQWLITNKKCPICR 943

[Close]

BLAST of ClCG08G006230 vs. Swiss-Prot
Match: RN111_PONAB (E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07
Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 199 KEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
           +E+ EEKC +CL   EE  +    V RL C HLFH  CV QWL  + +CP+CR
Sbjct: 927 EEDTEEKCTICLSILEEGED----VRRLPCMHLFHQVCVDQWLITNKKCPICR 975

[Close]

BLAST of ClCG08G006230 vs. TrEMBL
Match: B9GU33_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08360g PE=4 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 61/207 (29.47%), Postives = 88/207 (42.51%), Query Frame = 1


Query: 52  TNGFLIRLQLSHLLKPLYIPHSSFFLDSSTQLLLLPPSYFSSYSAALKFVLYTLSHLGVP 111
           T+  +I LQ SH+L+  Y       L+++ +  L P   FSS+      V   LS +G  
Sbjct: 19  TDAIIIHLQFSHVLELCYPETIQIPLNTTNESHLFPRQLFSSHVNRESIVKEILSSMGCS 78

Query: 112 DSNPDPLARLIFSFAN---CHHLSATKSLVPLYISFTSTTVLRNHTEAADWVYGGAPESQ 171
               +  A  I SFA     +  +A+ S V   +     T   +  E  D     +   +
Sbjct: 79  SDFIESAAPDISSFALDMVTNPCNASSSEVLTMVLAIHVTTPYDEREEIDRALSESLMQE 138

Query: 172 VVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLC 231
             R    +   +  LK  S +GSC MK         +CMVCLE F   +   C    L C
Sbjct: 139 ASRFKPASKSCIDGLKRMSLEGSCSMK---------ECMVCLEEFLMGSEVVC----LPC 198

Query: 232 SHLFHFRCVSQWLSLDHRCPVCRSPMP 256
            H+FH  C+ +WL   H CP+CR  MP
Sbjct: 199 GHIFHGDCIVRWLETSHLCPLCRFAMP 212

[Close]

BLAST of ClCG08G006230 vs. TrEMBL
Match: A0A0A0KDU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.3e-10
Identity = 56/208 (26.92%), Postives = 91/208 (43.75%), Query Frame = 1


Query: 53  NGFLIRLQLSHLLKPLYIPHSSFFLDSSTQLLLLPPSYFSSYSAALKFVLYTLSHLGVPD 112
           N FL  L   H+L+  +     + L+SS    L+P   F  ++ A   ++   S  GV  
Sbjct: 34  NCFLFHLHFRHILQSNHSQQFHYLLNSSLSSFLIPCDVF--FATASSILIAVFSGTGVAQ 93

Query: 113 SNPDPLARLIFSFAN---CHHLSATKSLVPLYISFTSTTVLRNHTEAADWVYGGAPESQV 172
              D     + S A    C+ L+A ++++PL +S    +      E    +   +P  Q 
Sbjct: 94  DFLDTAVPDVLSVAADIACNPLNAGRTILPLAVSVLVVSPYNERQEIGRVLRESSP--QA 153

Query: 173 VRTLRMTFESLRRLKDESFD--GSCLMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLL 232
            +TL  +  ++  LK    D  G  L+          +C +CL+    E      V+RL 
Sbjct: 154 FKTLPASEMAIEGLKKVEIDVGGELLIG---------ECRICLD----ELMNGMEVTRLP 213

Query: 233 CSHLFHFRCVSQWLSLDHRCPVCRSPMP 256
           C+HL+H  C+ +WL   H CP+CR  MP
Sbjct: 214 CAHLYHRDCIVKWLETSHLCPLCRYAMP 224

[Close]

BLAST of ClCG08G006230 vs. TrEMBL
Match: A0A151UAB2_CAJCA (E3 ubiquitin-protein ligase RNF181 OS=Cajanus cajan GN=KK1_020499 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 151 RNHTEAADWVYGGAPES--QVVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMV 210
           R H+E+ D   G   ES  Q VR +  + E++  LK  +F  S  +K+       EKC +
Sbjct: 131 RQHSESDDEEDGMIEESMQQDVRMVPASKEAIESLK--AFTDSSFLKT-------EKCNI 190

Query: 211 CLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMP 256
           C+E F+++ N+   +S + C+H+FH  C+ +WL   H CP+CR PMP
Sbjct: 191 CMERFQDDVNSLSCLS-MPCNHVFHSDCIVKWLQTSHMCPLCRYPMP 227

[Close]

BLAST of ClCG08G006230 vs. TrEMBL
Match: A0A0E0F9F4_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 193 LMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRS 252
           L ++   E  E  C VCLEGF++       ++R+ CSH FH  C+  WL L HRCP+CR 
Sbjct: 133 LQEAQASEARESDCAVCLEGFDQGEK----LTRMPCSHCFHATCILDWLRLSHRCPLCRF 191

Query: 253 PMP 256
           PMP
Sbjct: 193 PMP 191

[Close]

BLAST of ClCG08G006230 vs. TrEMBL
Match: A0A0E0F9F3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 193 LMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRS 252
           L ++   E  E  C VCLEGF++       ++R+ CSH FH  C+  WL L HRCP+CR 
Sbjct: 4   LQEAQASEARESDCAVCLEGFDQGEK----LTRMPCSHCFHATCILDWLRLSHRCPLCRF 62

Query: 253 PMP 256
           PMP
Sbjct: 64  PMP 62

[Close]

BLAST of ClCG08G006230 vs. TAIR10
Match: AT3G58720.2 (AT3G58720.2 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-09
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 1


Query: 161 YGGAPESQVVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMVCLEGFEEETNTK 220
           Y   P+S ++R+L + +    R K+   + S   ++   EE++++C VCLE FE     K
Sbjct: 131 YNPVPKSTLLRSLSLYY----RNKNPGSESSRNTQNLSGEEDDKRCSVCLEDFEP----K 190

Query: 221 CSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
            +V    C H+FH  C+  WL    +CPVCR
Sbjct: 191 ETVMLTPCKHMFHEECIVPWLKTKGQCPVCR 213

[Close]

BLAST of ClCG08G006230 vs. TAIR10
Match: AT1G74620.1 (AT1G74620.1 RING/U-box superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-08
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 202 EEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMP 256
           EE  C +C+E + E ++    V++L C H FH  C+++WL L+H CP+CRS +P
Sbjct: 179 EENGCAICMEDYIEGSSI---VAKLPCDHEFHGDCINKWLQLNHMCPLCRSSIP 229

[Close]

BLAST of ClCG08G006230 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08
Identity = 24/53 (45.28%), Postives = 30/53 (56.60%), Query Frame = 1


Query: 199 KEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCR 252
           +EEEE++C +CL GFEE    K       CSH +H  CV +WL  +  CP+CR
Sbjct: 100 EEEEEKECCICLGGFEEGEKMKVLPP---CSHCYHCECVDRWLKTESSCPLCR 149

[Close]

BLAST of ClCG08G006230 vs. TAIR10
Match: AT5G56340.1 (AT5G56340.1 RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-08
Identity = 33/92 (35.87%), Postives = 44/92 (47.83%), Query Frame = 1


Query: 202 EEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMPWVHAFF 261
           E  +C VCL+ FE+ T  K     + C H FH RC+  WL L   CPVCR  +P      
Sbjct: 255 EPLQCSVCLDDFEKGTEAK----EMPCKHKFHVRCIVPWLELHSSCPVCRFELPSSADDD 314

Query: 262 PDADVDA-RSSFSRNSTATSYLDLDDDVDNDD 293
            +   D+ R   +RN   TS  ++ ++V N D
Sbjct: 315 DETKTDSERVLRTRNVRETSNGNVVENVGNAD 342

[Close]

BLAST of ClCG08G006230 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 55.8 bits (133), Expect = 5.8e-08
Identity = 26/60 (43.33%), Postives = 30/60 (50.00%), Query Frame = 1


Query: 196 SCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMP 255
           S C    E  C VC E FE ET  +     + C HLFH  C+  WLS+ + CPVCR  +P
Sbjct: 189 SDCHIGSEANCAVCTEIFETETEAR----EMPCKHLFHDDCIVPWLSIRNSCPVCRFELP 244

[Close]

BLAST of ClCG08G006230 vs. NCBI nr
Match: gi|470112851|ref|XP_004292643.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 46/173 (26.59%), Postives = 87/173 (50.29%), Query Frame = 1


Query: 105 LSHLGVPDSNPDPLARLIFSFANCHHLSATKSLVPLYISFTSTTVLRNHTEAA-DWVYGG 164
           LS +GVP+S    + R IF   +   ++    ++ + IS  +T    N+   A D V   
Sbjct: 25  LSGMGVPESEWSYIFRRIFRVVD---VAVPNVVIDVTISDVTTITYDNYARTAEDMVVSE 84

Query: 165 APE---SQVVRTLRMTFESLRRLKDESFDGSCLMKSCC--KEEEEEKCMVCLEGFEEETN 224
           + E   ++++   + + E L +++ ++ +G  + + C   K+   + C++CL+  +    
Sbjct: 85  SLERYRAKLIPATKSSIEGLEKVRVDNLEGEEVEQQCSRPKKRSRQSCVICLDPLDAART 144

Query: 225 TK---------CSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMPWVHAFFP 263
           T+          +++RL CSHL+H  C+  WL ++H CP+CR PMP V    P
Sbjct: 145 TEEQDSCAEQEVTINRLPCSHLYHGECIVMWLKINHMCPMCRYPMPTVEEAKP 194

[Close]

BLAST of ClCG08G006230 vs. NCBI nr
Match: gi|566156911|ref|XP_002300984.2| (hypothetical protein POPTR_0002s08360g [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 61/207 (29.47%), Postives = 88/207 (42.51%), Query Frame = 1


Query: 52  TNGFLIRLQLSHLLKPLYIPHSSFFLDSSTQLLLLPPSYFSSYSAALKFVLYTLSHLGVP 111
           T+  +I LQ SH+L+  Y       L+++ +  L P   FSS+      V   LS +G  
Sbjct: 19  TDAIIIHLQFSHVLELCYPETIQIPLNTTNESHLFPRQLFSSHVNRESIVKEILSSMGCS 78

Query: 112 DSNPDPLARLIFSFAN---CHHLSATKSLVPLYISFTSTTVLRNHTEAADWVYGGAPESQ 171
               +  A  I SFA     +  +A+ S V   +     T   +  E  D     +   +
Sbjct: 79  SDFIESAAPDISSFALDMVTNPCNASSSEVLTMVLAIHVTTPYDEREEIDRALSESLMQE 138

Query: 172 VVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLC 231
             R    +   +  LK  S +GSC MK         +CMVCLE F   +   C    L C
Sbjct: 139 ASRFKPASKSCIDGLKRMSLEGSCSMK---------ECMVCLEEFLMGSEVVC----LPC 198

Query: 232 SHLFHFRCVSQWLSLDHRCPVCRSPMP 256
            H+FH  C+ +WL   H CP+CR  MP
Sbjct: 199 GHIFHGDCIVRWLETSHLCPLCRFAMP 212

[Close]

BLAST of ClCG08G006230 vs. NCBI nr
Match: gi|659133409|ref|XP_008466716.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 5.8e-10
Identity = 53/207 (25.60%), Postives = 92/207 (44.44%), Query Frame = 1


Query: 53  NGFLIRLQLSHLLKPLYIPHSSFFLDSSTQLLLLPPSYFSSYSAALKFVLYTLSHLGVPD 112
           N FL  L   H+L+  +   S + L+SS    L+P   F  ++ A   ++   S  GV  
Sbjct: 34  NCFLFHLHFRHILQSNHSQQSHYLLNSSLSSYLIPCDVF--FATASSILIAVFSGTGVAQ 93

Query: 113 SNPDPLARLIFSFAN---CHHLSATKSLVPLYISFTSTTVLRNHTEAADWVYGGAPES-Q 172
              D     + S A    C+ L+A ++++PL +S    +      E    +   +P++ +
Sbjct: 94  DFLDTAVPDVLSVAADIACNPLNAGRTILPLTVSVLVVSPYNERQEIGQVLRESSPQAFK 153

Query: 173 VVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLLC 232
            +    M  E L+ + +    G  L+          +C +CL+    E      ++RL C
Sbjct: 154 TLPASEMAIEDLKNV-EIGVGGELLIG---------ECRICLD----ELVNGMEITRLPC 213

Query: 233 SHLFHFRCVSQWLSLDHRCPVCRSPMP 256
           +HL+H  C+ +WL   H CP+CR  MP
Sbjct: 214 AHLYHRDCIVKWLETSHLCPLCRYAMP 224

[Close]

BLAST of ClCG08G006230 vs. NCBI nr
Match: gi|449465461|ref|XP_004150446.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-10
Identity = 56/208 (26.92%), Postives = 91/208 (43.75%), Query Frame = 1


Query: 53  NGFLIRLQLSHLLKPLYIPHSSFFLDSSTQLLLLPPSYFSSYSAALKFVLYTLSHLGVPD 112
           N FL  L   H+L+  +     + L+SS    L+P   F  ++ A   ++   S  GV  
Sbjct: 34  NCFLFHLHFRHILQSNHSQQFHYLLNSSLSSFLIPCDVF--FATASSILIAVFSGTGVAQ 93

Query: 113 SNPDPLARLIFSFAN---CHHLSATKSLVPLYISFTSTTVLRNHTEAADWVYGGAPESQV 172
              D     + S A    C+ L+A ++++PL +S    +      E    +   +P  Q 
Sbjct: 94  DFLDTAVPDVLSVAADIACNPLNAGRTILPLAVSVLVVSPYNERQEIGRVLRESSP--QA 153

Query: 173 VRTLRMTFESLRRLKDESFD--GSCLMKSCCKEEEEEKCMVCLEGFEEETNTKCSVSRLL 232
            +TL  +  ++  LK    D  G  L+          +C +CL+    E      V+RL 
Sbjct: 154 FKTLPASEMAIEGLKKVEIDVGGELLIG---------ECRICLD----ELMNGMEVTRLP 213

Query: 233 CSHLFHFRCVSQWLSLDHRCPVCRSPMP 256
           C+HL+H  C+ +WL   H CP+CR  MP
Sbjct: 214 CAHLYHRDCIVKWLETSHLCPLCRYAMP 224

[Close]

BLAST of ClCG08G006230 vs. NCBI nr
Match: gi|1012365084|gb|KYP76266.1| (E3 ubiquitin-protein ligase RNF181 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 8.4e-09
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 151 RNHTEAADWVYGGAPES--QVVRTLRMTFESLRRLKDESFDGSCLMKSCCKEEEEEKCMV 210
           R H+E+ D   G   ES  Q VR +  + E++  LK  +F  S  +K+       EKC +
Sbjct: 131 RQHSESDDEEDGMIEESMQQDVRMVPASKEAIESLK--AFTDSSFLKT-------EKCNI 190

Query: 211 CLEGFEEETNTKCSVSRLLCSHLFHFRCVSQWLSLDHRCPVCRSPMP 256
           C+E F+++ N+   +S + C+H+FH  C+ +WL   H CP+CR PMP
Sbjct: 191 CMERFQDDVNSLSCLS-MPCNHVFHSDCIVKWLQTSHMCPLCRYPMP 227

The following BLAST results are available for this feature:

BLAST of ClCG08G006230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R111A_XENLA	3.5e-07	49.06	E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis GN=rnf111-a P...	[more]
R111B_XENLA	3.5e-07	49.06	E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b PE=2 SV=1	[more]
R111C_XENLA	3.5e-07	49.06	E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c PE=2 SV=1	[more]
RN111_XENTR	3.5e-07	49.06	E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1	[more]
RN111_PONAB	3.5e-07	49.06	E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2 SV=1	[more]

BLAST of ClCG08G006230 vs. TrEMBL


Match Name	E-value	Identity	Description
B9GU33_POPTR	2.8e-11	29.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08360g PE=4 SV=2	[more]
A0A0A0KDU3_CUCSA	5.3e-10	26.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385070 PE=4 SV=1	[more]
A0A151UAB2_CAJCA	5.9e-09	36.45	E3 ubiquitin-protein ligase RNF181 OS=Cajanus cajan GN=KK1_020499 PE=4 SV=1	[more]
A0A0E0F9F4_9ORYZ	2.2e-08	46.03	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
A0A0E0F9F3_9ORYZ	2.2e-08	46.03	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]

BLAST of ClCG08G006230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58720.2	5.2e-09	34.07	RING/U-box superfamily protein	[more]
AT1G74620.1	1.5e-08	42.59	RING/U-box superfamily protein	[more]
AT3G11110.1	2.6e-08	45.28	RING/U-box superfamily protein	[more]
AT5G56340.1	4.4e-08	35.87	RING/U-box superfamily protein	[more]
AT5G59550.1	5.8e-08	43.33	zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of ClCG08G006230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|470112851\|ref\|XP_004292643.1\|	3.1e-11	26.59	PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Fragaria vesca subsp. vesca]	[more]
gi\|566156911\|ref\|XP_002300984.2\|	4.0e-11	29.47	hypothetical protein POPTR_0002s08360g [Populus trichocarpa]	[more]
gi\|659133409\|ref\|XP_008466716.1\|	5.8e-10	25.60	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|449465461\|ref\|XP_004150446.1\|	7.6e-10	26.92	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus]	[more]
gi\|1012365084\|gb\|KYP76266.1\|	8.4e-09	36.45	E3 ubiquitin-protein ligase RNF181 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G006230.1	ClCG08G006230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 205..251 score: 1.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 206..250 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 206..251 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 201..254 score: 9.4
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 200..273 score: 9.3E-14coord: 294..299 score: 9.3
None	No IPR available	PANTHER	PTHR22763:SF78	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 200..273 score: 9.3E-14coord: 294..299 score: 9.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 199..262 score: 3.06

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G006230	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G006230	Cucumber (Gy14) v2	cgybwcgB466
ClCG08G006230	Melon (DHL92) v3.6.1	medwcgB293
ClCG08G006230	Silver-seed gourd	carwcgB0066
ClCG08G006230	Silver-seed gourd	carwcgB0803
ClCG08G006230	Cucumber (Chinese Long) v3	cucwcgB527
ClCG08G006230	Watermelon (97103) v2	wcgwmbB336
ClCG08G006230	Wax gourd	wcgwgoB624
ClCG08G006230	Cucumber (Gy14) v1	cgywcgB080
ClCG08G006230	Cucurbita maxima (Rimu)	cmawcgB034
ClCG08G006230	Cucurbita maxima (Rimu)	cmawcgB273
ClCG08G006230	Cucurbita maxima (Rimu)	cmawcgB678
ClCG08G006230	Cucurbita moschata (Rifu)	cmowcgB026
ClCG08G006230	Cucurbita moschata (Rifu)	cmowcgB265
ClCG08G006230	Cucurbita moschata (Rifu)	cmowcgB680
ClCG08G006230	Wild cucumber (PI 183967)	cpiwcgB534
ClCG08G006230	Cucumber (Chinese Long) v2	cuwcgB507
ClCG08G006230	Melon (DHL92) v3.5.1	mewcgB301
ClCG08G006230	Watermelon (97103) v1	wcgwmB400
ClCG08G006230	Cucurbita pepo (Zucchini)	cpewcgB180
ClCG08G006230	Cucurbita pepo (Zucchini)	cpewcgB415
ClCG08G006230	Cucurbita pepo (Zucchini)	cpewcgB710