ClCG08G005070 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G005070
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRibonuclease H-like superfamily protein LENGTH=575
LocationCG_Chr08 : 16082922 .. 16085268 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAACTTCTTTTGGGAGGGGAATAAGGGAGGAAAACTGAATCATTTAGTTAAATGGGAGATTGCCTCTAGATCTCAAAAAGATGGAGGCCTTGGTTTGGGGGGTTTGAGAAATAGGAACTTGGCATTGCTAGCTAAATGGGGTTGGAGATTTATGAAGGAGGACAATTCTCTTTGGGCTCTGGTAATAAGAAGTGTCCATGGAAGTACTCCTTTTAAATGGCACACGGCTGGCAAGGATGATTCTGGTCTCCGTAGCCCTTGGATAAGTATATCTAGATCTTGGTTGAAAATTGAAGAGCTGGCGTATTCAAACTTGGGAATGGTGGCAGAATTGCCTTTTGGTTAGAGCCTTGGATGGATAAAATTCCATTGAACTTATGTTTTCCAAGATTATTTAGAATTGCCCTCAATCTCAGAACATTGGGACTCCTCTTCTTCATCATGGTCCATTTTCTTCCGTCGGCTTCTAAAAGAAGAGGAGATTGCAGATTTTCAGAACCTTCTTGGAATCATTTCTAATAAAAAAGTTACTGAATATTTCGGACGAGCGGATATGGTCTTTAGAAACAAGTGGAGTATTCTCGGTGAAATCCCTTGTTAATTACTTGTCCTTGGCATCACCAATCGAAAACCACTTGGAGAAAGCCTTGTGGAAGTCCAAAAGCCCTCGTCAGGTGAACATCACGATATGGATTATGTTAAATGGCTACTTAAATTTCTCCTCAGTTATGCAAAGGAAACTTGCAGCCCATTGCTTGTCTCCTCATATTTGCCCACTGTGTATGGCTGATAAGGAGTTACAACATCTGTTTTTTGACTGCTGCTATGCAAAAAAATGTTGGTTCGGAATATTCTCCATTTTTTTAACATTGGCTGGGTCTTTGGGAATGGTTTTAGTGAAAATGTCCTGCAGATTCTGGTTGGTCCAACATTTAAGAAGGGTCCCAAGATCCTATGGAGTAATGCGGTTAAAGCTATACTTTTTGAAATTTGGTTTGAAAGAAACCAACGAGTCTTCCATAATAAAGCAACCCCTAGGTTAGATTGCTTTGAGATTGCACATCTCAACGCTACCTCTTGGAGTACTCTTTCAAAATCATTTGAAGACTTTTCTATTGAAGACCTTAGTTTAAATTGGAGGGCAATTATTTTTCCAGCTTATTAGCCTTTGTTTGTTTTACTGTTTTAGCATTTACTTTGTACGGTTACTGTTTCTTCCGGTACTTAGGAACTTTGGTCTGGTCTTGGGATGATGTTTGGTTCCTTTTTCACTTTATTTTGGAGGTGCTAAGGGGGTGTCAACCTAGTTGAGATGCCTGGGTGCACCTGTTAATCAAAACTTTCTGTGATTTCTATGTACTTGTCTCTTGTACATTAAGCATTAGTCTCATTTCATTACTTCAACGAAGAGATTTATTTCAGTTTCAAAAAGAGATAAAGAGCCTTCCATTAGACTATTGGAGCATAAGCACGTTTGAAGCCGTTGGAGCTTATTTTGGTGGTCTTGAGAATATTGCAACCGAAACAAATCTTTTGAACTGCTTGGAAGCTAAGATTCAAGTTAAGAAAAACTTGTATGGATTTATGCTGCCGACTATAGAGATTGAGTATGAAAAGCGCGACAACATTTTTTAAACTTTGGTGATATTGAAATAGTGGATGCTCCTAATATAGTTCATGGTGATTTATATGATAAAATTTTACTAATTCCATTGATTTAGTTCGTTTGAATCTTGTTTTACAGGATGGTCTCCATCTTAACTTATTAAAACCCAATTGGACATTCATGGCATCATCACAGAATATGACGAATATATCTAGGAATCCATTTGCGGCCTTAGTAAAGGATGATTCTCAGGCGTTGCAACATACATCAAATTCTAAGCAAGCTTCACCAGAACTTAGCAAGATGCTTCCCGATTGCCGATAATTCTTTGGACCTAAAGAAGAAGGTAATCCAGCCTGATGTGAACGTAACAGAGGCATTCAAAGAGAAATTTATTGAGGAAAGAGAAAAAGGCAGCTGCTTGACTAATGGGCTCAATGACTTGCTTAGACGTGATTCATTAACTAATGAAAGTGTCAAAAACTCTCATATTGAGACCCTTATCATTCCTTCCAAGGATACTCAACGAACACCTTTTGGCGGTGCTTCAAGCTCCTTGATCAACAACTTAGCGTCGGTTGAAGTAATGGAACCGTTGGTATTCTCTCTAAATGATGTCTTCTTTCCTAAGAGTAAAAAAGGCAGCGTGCACAACAACCATCAAGGTCTCCCCCACATTTCTCCTAAGGATATGGTACTTGCTTCCTCCTTCGGTGCACCTTCTCAACCCCCTTAA

mRNA sequence

ATGAGAAACTTCTTTTGGGAGGGGAATAAGGGAGGAAAACTGAATCATTTAGTTAAATGGGAGATTGCCTCTAGATCTCAAAAAGATGGAGGCCTTGGTTTGGGGGGTTTGAGAAATAGGAACTTGGCATTGCTAGCTAAATGGGGTTGGAGATTTATGAAGGAGGACAATTCTCTTTGGGCTCTGGTAATAAGAAGTGTCCATGGAAGTACTCCTTTTAAATGGCACACGGCTGGCAAGGATGATTCTGGTCTCCGTAGCCCTTGGATAAGTATATCTAGATCTTGGTTGAAAATTGAAGAGCTGGCGTATTCAAACTTGGGAATGGTGGCAGAATTGCCTTTTGATTATTTAGAATTGCCCTCAATCTCAGAACATTGGGACTCCTCTTCTTCATCATGGTCCATTTTCTTCCGTCGGCTTCTAAAAGAAGAGGAGATTGCAGATTTTCAGAACCTTCTTGGAATCATTTCTAATAAAAAAGTTACTGAATATTTCGGACGAGCGGATATGAAAGCCTTGTGGAAGTCCAAAAGCCCTCGTCAGGTGAACATCACGATATGGATTATGTTAAATGGCTACTTAAATTTCTCCTCAGTTATGCAAAGGAAACTTGCAGCCCATTGCTTGTCTCCTCATATTTGCCCACTGTGTATGGCTGATAAGGAGTTACAACATCTTGAAAATGTCCTGCAGATTCTGGTTGGTCCAACATTTAAGAAGGGTCCCAAGATCCTATGGAGTAATGCGGTTAAAGCTATACTTTTTGAAATTTGGTTTGAAAGAAACCAACGAGTCTTCCATAATAAAGCAACCCCTAGGTTAGATTGCTTTGAGATTGCACATCTCAACGCTACCTCTTGGACCGTTGGAGCTTATTTTGGTGGTCTTGAGAATATTGCAACCGAAACAAATCTTTTGAACTGCTTGGAAGCTAAGATTCAAGATGGTCTCCATCTTAACTTATTAAAACCCAATTGGACATTCATGGCATCATCACAGAATATGACGAATATATCTAGGAATCCATTTGCGGCCTTAGTAAAGGATGATTCTCAGGCATGCTTCCCGATTGCCGATAATTCTTTGGACCTAAAGAAGAAGGTAATCCAGCCTGATGTGAACGTAACAGAGGCATTCAAAGAGAAATTTATTGAGGAAAGAGAAAAAGGCAGCTGCTTGACTAATGGGCTCAATGACTTGCTTAGACGTGATTCATTAACTAATGAAAGTGTCAAAAACTCTCATATTGAGACCCTTATCATTCCTTCCAAGGATACTCAACGAACACCTTTTGGCGGTGCTTCAAGCTCCTTGATCAACAACTTAGCGTCGGTTGAAGTAATGGAACCGTTGGTATTCTCTCTAAATGATGTCTTCTTTCCTAAGAGTAAAAAAGGCAGCGTGCACAACAACCATCAAGGTCTCCCCCACATTTCTCCTAAGGATATGGTACTTGCTTCCTCCTTCGGTGCACCTTCTCAACCCCCTTAA

Coding sequence (CDS)

ATGAGAAACTTCTTTTGGGAGGGGAATAAGGGAGGAAAACTGAATCATTTAGTTAAATGGGAGATTGCCTCTAGATCTCAAAAAGATGGAGGCCTTGGTTTGGGGGGTTTGAGAAATAGGAACTTGGCATTGCTAGCTAAATGGGGTTGGAGATTTATGAAGGAGGACAATTCTCTTTGGGCTCTGGTAATAAGAAGTGTCCATGGAAGTACTCCTTTTAAATGGCACACGGCTGGCAAGGATGATTCTGGTCTCCGTAGCCCTTGGATAAGTATATCTAGATCTTGGTTGAAAATTGAAGAGCTGGCGTATTCAAACTTGGGAATGGTGGCAGAATTGCCTTTTGATTATTTAGAATTGCCCTCAATCTCAGAACATTGGGACTCCTCTTCTTCATCATGGTCCATTTTCTTCCGTCGGCTTCTAAAAGAAGAGGAGATTGCAGATTTTCAGAACCTTCTTGGAATCATTTCTAATAAAAAAGTTACTGAATATTTCGGACGAGCGGATATGAAAGCCTTGTGGAAGTCCAAAAGCCCTCGTCAGGTGAACATCACGATATGGATTATGTTAAATGGCTACTTAAATTTCTCCTCAGTTATGCAAAGGAAACTTGCAGCCCATTGCTTGTCTCCTCATATTTGCCCACTGTGTATGGCTGATAAGGAGTTACAACATCTTGAAAATGTCCTGCAGATTCTGGTTGGTCCAACATTTAAGAAGGGTCCCAAGATCCTATGGAGTAATGCGGTTAAAGCTATACTTTTTGAAATTTGGTTTGAAAGAAACCAACGAGTCTTCCATAATAAAGCAACCCCTAGGTTAGATTGCTTTGAGATTGCACATCTCAACGCTACCTCTTGGACCGTTGGAGCTTATTTTGGTGGTCTTGAGAATATTGCAACCGAAACAAATCTTTTGAACTGCTTGGAAGCTAAGATTCAAGATGGTCTCCATCTTAACTTATTAAAACCCAATTGGACATTCATGGCATCATCACAGAATATGACGAATATATCTAGGAATCCATTTGCGGCCTTAGTAAAGGATGATTCTCAGGCATGCTTCCCGATTGCCGATAATTCTTTGGACCTAAAGAAGAAGGTAATCCAGCCTGATGTGAACGTAACAGAGGCATTCAAAGAGAAATTTATTGAGGAAAGAGAAAAAGGCAGCTGCTTGACTAATGGGCTCAATGACTTGCTTAGACGTGATTCATTAACTAATGAAAGTGTCAAAAACTCTCATATTGAGACCCTTATCATTCCTTCCAAGGATACTCAACGAACACCTTTTGGCGGTGCTTCAAGCTCCTTGATCAACAACTTAGCGTCGGTTGAAGTAATGGAACCGTTGGTATTCTCTCTAAATGATGTCTTCTTTCCTAAGAGTAAAAAAGGCAGCGTGCACAACAACCATCAAGGTCTCCCCCACATTTCTCCTAAGGATATGGTACTTGCTTCCTCCTTCGGTGCACCTTCTCAACCCCCTTAA

Protein sequence

MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLWALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSWLKIEELAYSNLGMVAELPFDYLELPSISEHWDSSSSSWSIFFRRLLKEEEIADFQNLLGIISNKKVTEYFGRADMKALWKSKSPRQVNITIWIMLNGYLNFSSVMQRKLAAHCLSPHICPLCMADKELQHLENVLQILVGPTFKKGPKILWSNAVKAILFEIWFERNQRVFHNKATPRLDCFEIAHLNATSWTVGAYFGGLENIATETNLLNCLEAKIQDGLHLNLLKPNWTFMASSQNMTNISRNPFAALVKDDSQACFPIADNSLDLKKKVIQPDVNVTEAFKEKFIEEREKGSCLTNGLNDLLRRDSLTNESVKNSHIETLIIPSKDTQRTPFGGASSSLINNLASVEVMEPLVFSLNDVFFPKSKKGSVHNNHQGLPHISPKDMVLASSFGAPSQPP
Homology
[Close]
BLAST of ClCG08G005070 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-10
Identity = 37/98 (37.76%), Postives = 49/98 (50.00%), Query Frame = 1 

Query: 2   RNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLWA 61
           R F W      K  HLVKW      +K+GGLG+   ++ N AL++K GWR ++E NSLW 
Sbjct: 71  RTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWT 130

Query: 62  LVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSWLKI 100
           LV++        K+H     DS    P  S S +W  I
Sbjct: 131 LVLQK-------KYHVGEIRDSRWLIPKGSWSSTWRSI 161

[Close]
BLAST of ClCG08G005070 vs. TrEMBL
Match: M5X2E2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016706mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.6e-29
Identity = 96/315 (30.48%), Postives = 144/315 (45.71%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           MR+F WEG   GK NH V WE+  +++  GGL +G LR R+ AL AKW WRF  E ++LW
Sbjct: 680 MRDFLWEG-LDGKRNHAVSWEVVGKAKFCGGLEVGSLRARSAALRAKWLWRFPNEPHALW 739

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSW----------------LKIEELAY 120
             VIRS++G     W          RSPW  IS  +                ++  E  +
Sbjct: 740 HKVIRSIYGMDTNGWDAKPATRGSCRSPWRDISSGYNLFLQGCVFVVGCGVRVRFWEDDW 799

Query: 121 SNLGMVAELPFDYLELPSISEHWDSSSSSWSIFFRRLLKEEEIADFQNLLGIISNKKVTE 180
           S  G++ E+       P +         SW   FRR L E EI +   LL ++ N    E
Sbjct: 800 SRGGVLKEV------FPRLFNLSRKFPLSWDFGFRRNLNELEITEAARLLDLL-NCGEGE 859

Query: 181 YFGRADMKALWKSKSPRQVNITIWIMLNGYLNFSSVMQRKLAAHCLSPHICPLC-MADKE 240
            F  +    +W +K+P +V I +W  + G L+    +QR+    C+SPH C LC  A + 
Sbjct: 860 IF--SPYTQIWNAKTPPKVKIFMWQAVLGKLSTGDTVQRRCPYLCISPHWCALCNKAGES 919

Query: 241 LQHL-----------------ENVLQILVGPTFK------------KGPKILWSNAVKAI 270
           + HL                  N + ++    F+            K  KILW + ++A+
Sbjct: 920 VDHLLLHCPFSLKLWETLLKEVNTVWVIPEGCFELFSIRFDALGRGKKAKILWGSLMQAV 979

[Close]
BLAST of ClCG08G005070 vs. TrEMBL
Match: M5WJI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020784mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.4e-29
Identity = 104/352 (29.55%), Postives = 153/352 (43.47%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           MR+F WEG   GK NH V WE+  +++  GGLG+G LR R+ AL AKW WRF  E ++LW
Sbjct: 110 MRDFLWEG-LDGKRNHAVSWEVVGKAKFCGGLGVGSLRARSAALRAKWLWRFPNEPHALW 169

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSW----------------LKIEELAY 120
             VIRS++G     W          RSPW  IS  +                ++  E  +
Sbjct: 170 HKVIRSIYGMDTNGWDAKPATRGSCRSPWRDISSGYNLFLQGCVFEVGCGVRVRFWEDDW 229

Query: 121 SNLGMVAELPFDYLELPSISEHWDSSSS-------SWSIFFRRLLKEEEIADFQNLLGII 180
           S  G++ E+      L     H  SS +       SW   FRR L E EI +   LL ++
Sbjct: 230 SRGGVLKEVFPRLFNLSRKQNHNISSFTGLDGFPLSWDFGFRRNLNELEITEAARLLDLL 289

Query: 181 SNKKV-----------TEYFGR-------------------ADMKALWKSKSPRQVNITI 240
              +V            + FG                    +    +WK+K+P +V I +
Sbjct: 290 EGVRVFSSRLDKRRWKLDPFGLFTCHSFCSHIQNRDEGEIFSPYTQIWKAKTPPKVKIFV 349

Query: 241 WIMLNGYLNFSSVMQRKLAAHCLSPHICPLC-MADKELQH---------------LENVL 270
           W  + G LN    +QR+    C+SPH C LC  A + + H               L+ V 
Sbjct: 350 WQAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGESVDHILIHCPFSLKLWETLLKEVN 409

[Close]
BLAST of ClCG08G005070 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 86/264 (32.58%), Postives = 126/264 (47.73%), Query Frame = 1 

Query: 1    MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
            MRNF WEG + GK  HLV+WE  ++S+++GGLG+G LR RN AL AKW WRF  E NSLW
Sbjct: 804  MRNFLWEGLEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLW 863

Query: 61   ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSWLKIEELAYSNLGMVAELPF--DYL 120
              +I+S +G     W T   D    R+PW  IS+ +    +    ++G   ++ F  D+ 
Sbjct: 864  HRIIKSKYGIDSNGWDTKQIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDFW 923

Query: 121  ELPSISEHWDSSSSSWS--IFFRRLLKEEEIADFQNLLGIISNKKVTEYFGRADMKALWK 180
                I +      SS S     +R L E EIA+   LL I+ N ++  Y  R D ++ W+
Sbjct: 924  LKEGILKDLFPRLSSLSRRKKSKRNLSEAEIAEVVILLDILGNVRL--YGSRPDRRS-WE 983

Query: 181  SK--------------------------------SPRQVNITIWIMLNGYLNFSSVMQRK 228
             +                                +P ++   +W+  NG +N    +QR+
Sbjct: 984  VEEQGSFSCKSFRSFLLSTTRDVFPPFSSIWKAKTPPKIQFFVWLAANGRINTCDCIQRR 1043

[Close]
BLAST of ClCG08G005070 vs. TrEMBL
Match: M5WZI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027214mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 86/279 (30.82%), Postives = 134/279 (48.03%), Query Frame = 1 

Query: 22  IASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLWALVIRSVHGSTPFKWHTAGKD 81
           +  +++  GGLG+G L+ R+ AL AKW WRF  E ++LW  VIRS++G    +W      
Sbjct: 2   LVGKAKSFGGLGVGSLKARSAALRAKWLWRFPNEPHALWHKVIRSIYGMDTNEWDAKPVI 61

Query: 82  DSGLRSPWISISRSW----------------LKIEELAYSNLGMVAELPFDYLELP---- 141
               RSPW  IS  +                ++  E  +S  G++ E+      L     
Sbjct: 62  RGSCRSPWRDISSGYNLFLQGYVFVVGCGVRVRFWEDNWSRGGVLKEVFPRLFNLSRKQN 121

Query: 142 -SISEHWDSSS--SSWSIFFRRLLKEEEIADF---QNLLGIISNKKVTEYFGRADMKALW 201
            +IS + DS     SW   FRR L + EIA+      LL ++   + + Y        +W
Sbjct: 122 HNISSYVDSDGFPLSWDFGFRRNLNDLEIAEMAEVARLLDLLGGMRFSPY------TQIW 181

Query: 202 KSKSPRQVNITIWIMLNGYLNFSSVMQRKLAAHCLSPHICPLC-MADKELQHLENVLQIL 261
           K+K+P +V I +W  + G LN    +QR      LSPH C LC  A +  +HL     +L
Sbjct: 182 KAKTPSKVKIFVWQAVLGKLNTDDTLQRHCTYMYLSPHWCALCNKAGESAEHL-----LL 241

Query: 262 VGP----TFKKGPKILWSNAVKAILFEIWFERNQRVFHN 270
             P     + K  KILW + ++A+++ +W E N+R+F +
Sbjct: 242 HCPFSLKLWGKKAKILWGSLMQAVIWNLWLECNRRIFED 269

[Close]
BLAST of ClCG08G005070 vs. TrEMBL
Match: M5W794_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-22
Identity = 98/320 (30.63%), Postives = 139/320 (43.44%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           MRNF WEG + GK  HLV+WE  ++S+++GGLG+G LR RN AL AKW WRF  E NSLW
Sbjct: 682 MRNFLWEGLEDGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLESNSLW 741

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSW--LKIEELAYSNLGMVAELPFDYL 120
             +I+S +G           D +G         R W  L ++E    NL         + 
Sbjct: 742 HRIIKSKYGI----------DSNGFSVGNGEKIRFWEDLWLKEWILKNL---------FP 801

Query: 121 ELPSISEHWDSSSSSWSIFFRRLLKEEEIADFQNLLGIISNKKVTEYFGRADMKA----- 180
            L S+S    S         +R L E EIA+   LL I+   KV  Y  R+D ++     
Sbjct: 802 RLSSLSRRKKS---------KRNLSEAEIAEVVILLDILG--KVRLYGSRSDRRSWEIEE 861

Query: 181 --LWKSKSPR------------------------QVNITIWIMLNGYLNFSSVMQRKLAA 240
              +  KS R                        ++   +W+ +NG +N    +QR+   
Sbjct: 862 QGSFSCKSFRSFLLSTTRDVFPPFISIWKAKTPPKIQFFVWLAVNGRINTCDCIQRRQPK 921

Query: 241 HCLSPHICPLCMADKE-----LQHLENVLQI------LVGPTFKKGPKILWSNAVKAILF 277
            CL P  C LC  + E       H    L++       +   + K   IL    V AI +
Sbjct: 922 MCLYPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALRAEWGKRAGILRDFLVHAIFW 971

[Close]
BLAST of ClCG08G005070 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 97/275 (35.27%), Postives = 132/275 (48.00%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           M+ F WEG + GK  HLVKWE+ ++++++GGLG+G LRN+N ALLAKW WRF  E  SLW
Sbjct: 167 MKGFLWEGVEEGKKTHLVKWELVTKNKEEGGLGVGNLRNQNEALLAKWLWRFPMESQSLW 226

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISI---SRSWLKI--------EELAYSNLGM 120
             VIRS +G     W+         RSPW  I   S  +L+         E + +   G 
Sbjct: 227 HKVIRSKYGLQVNGWNALPPRRVSSRSPWKDISSGSHQFLRYCKFKVGNGERVRFWEDGW 286

Query: 121 VAELP----FDYLELPS------ISEHWDSSSS--SWSIFFRRLLKEEEIADFQNLL--- 180
           +A  P    F  L L S      IS   + SS+  SW+  FRR L E EI +   LL   
Sbjct: 287 LAGGPLKEQFPKLFLLSRKHGHNISRFVEGSSNSLSWNFDFRRNLNEMEIEEAATLLQKV 346

Query: 181 -----------------------------GIISNKKVTEYFGRADMKALWKSKSPRQVNI 221
                                         ++SN  +  Y+       +WKSK+P++V I
Sbjct: 347 EEVRLSPSKMDNRRWNLEASGLFTCKSYRSLLSNNGIVHYY--PPYSQIWKSKAPQKVKI 406

[Close]
BLAST of ClCG08G005070 vs. NCBI nr
Match: gi|595912903|ref|XP_007214504.1| (hypothetical protein PRUPE_ppa016706mg, partial [Prunus persica])

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-29
Identity = 96/315 (30.48%), Postives = 144/315 (45.71%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           MR+F WEG   GK NH V WE+  +++  GGL +G LR R+ AL AKW WRF  E ++LW
Sbjct: 680 MRDFLWEG-LDGKRNHAVSWEVVGKAKFCGGLEVGSLRARSAALRAKWLWRFPNEPHALW 739

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSW----------------LKIEELAY 120
             VIRS++G     W          RSPW  IS  +                ++  E  +
Sbjct: 740 HKVIRSIYGMDTNGWDAKPATRGSCRSPWRDISSGYNLFLQGCVFVVGCGVRVRFWEDDW 799

Query: 121 SNLGMVAELPFDYLELPSISEHWDSSSSSWSIFFRRLLKEEEIADFQNLLGIISNKKVTE 180
           S  G++ E+       P +         SW   FRR L E EI +   LL ++ N    E
Sbjct: 800 SRGGVLKEV------FPRLFNLSRKFPLSWDFGFRRNLNELEITEAARLLDLL-NCGEGE 859

Query: 181 YFGRADMKALWKSKSPRQVNITIWIMLNGYLNFSSVMQRKLAAHCLSPHICPLC-MADKE 240
            F  +    +W +K+P +V I +W  + G L+    +QR+    C+SPH C LC  A + 
Sbjct: 860 IF--SPYTQIWNAKTPPKVKIFMWQAVLGKLSTGDTVQRRCPYLCISPHWCALCNKAGES 919

Query: 241 LQHL-----------------ENVLQILVGPTFK------------KGPKILWSNAVKAI 270
           + HL                  N + ++    F+            K  KILW + ++A+
Sbjct: 920 VDHLLLHCPFSLKLWETLLKEVNTVWVIPEGCFELFSIRFDALGRGKKAKILWGSLMQAV 979

[Close]
BLAST of ClCG08G005070 vs. NCBI nr
Match: gi|595841355|ref|XP_007208194.1| (hypothetical protein PRUPE_ppa020784mg [Prunus persica])

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-29
Identity = 104/352 (29.55%), Postives = 153/352 (43.47%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           MR+F WEG   GK NH V WE+  +++  GGLG+G LR R+ AL AKW WRF  E ++LW
Sbjct: 110 MRDFLWEG-LDGKRNHAVSWEVVGKAKFCGGLGVGSLRARSAALRAKWLWRFPNEPHALW 169

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSW----------------LKIEELAY 120
             VIRS++G     W          RSPW  IS  +                ++  E  +
Sbjct: 170 HKVIRSIYGMDTNGWDAKPATRGSCRSPWRDISSGYNLFLQGCVFEVGCGVRVRFWEDDW 229

Query: 121 SNLGMVAELPFDYLELPSISEHWDSSSS-------SWSIFFRRLLKEEEIADFQNLLGII 180
           S  G++ E+      L     H  SS +       SW   FRR L E EI +   LL ++
Sbjct: 230 SRGGVLKEVFPRLFNLSRKQNHNISSFTGLDGFPLSWDFGFRRNLNELEITEAARLLDLL 289

Query: 181 SNKKV-----------TEYFGR-------------------ADMKALWKSKSPRQVNITI 240
              +V            + FG                    +    +WK+K+P +V I +
Sbjct: 290 EGVRVFSSRLDKRRWKLDPFGLFTCHSFCSHIQNRDEGEIFSPYTQIWKAKTPPKVKIFV 349

Query: 241 WIMLNGYLNFSSVMQRKLAAHCLSPHICPLC-MADKELQH---------------LENVL 270
           W  + G LN    +QR+    C+SPH C LC  A + + H               L+ V 
Sbjct: 350 WQAVLGKLNTGDTLQRRCPYLCISPHWCALCNKAGESVDHILIHCPFSLKLWETLLKEVN 409

[Close]
BLAST of ClCG08G005070 vs. NCBI nr
Match: gi|658027317|ref|XP_008349094.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 133.7 bits (335), Expect = 9.2e-28
Identity = 89/276 (32.25%), Postives = 126/276 (45.65%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           M+ F  EG + GK  HLVKWE   +S+++GGLGLG LRNRN ALLAKW WRF +E NSLW
Sbjct: 99  MKGFLREGVEEGKKFHLVKWEKVCKSKEEGGLGLGNLRNRNAALLAKWLWRFRRESNSLW 158

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPWISISRSWLKIEELAYSNLGMVAELPF----- 120
             VI+S +G  P  W          R PW  IS  +          +G    L F     
Sbjct: 159 HRVIKSKYGLVPNGWDANCPSRGSSRCPWSDISAGYPSFLHSCNFEVGNGERLRFWEDGW 218

Query: 121 --------DYLELPSISEHWDSSSS----------SWSIFFRRLLKEEEIADFQNLLGII 180
                    +  L S+S   + S S          SW++ FRR L++ EI +   LL  +
Sbjct: 219 LEGGPLKEQFPRLFSLSRTKNQSISNLVVSSLQPVSWNLEFRRNLRKSEIEEVAGLLQKV 278

Query: 181 SN-----------KKVTEYFGRADMKA-------------------LWKSKSPRQVNITI 224
            +           ++  E  G+   K+                   +WK+K P +V I +
Sbjct: 279 ESVRLCHSREDRRRRNLEGSGQFTCKSYNSFLCNNEDVQQFPPFSQIWKAKVPPKVKILV 338

[Close]
BLAST of ClCG08G005070 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 107/355 (30.14%), Postives = 152/355 (42.82%), Query Frame = 1 

Query: 1   MRNFFWEGNKGGKLNHLVKWEIASRSQKDGGLGLGGLRNRNLALLAKWGWRFMKEDNSLW 60
           M+ F WEG + GK N+LVKWEI  +S+++GGLG+G LRNRN ALLAKW WRF KE +SLW
Sbjct: 351 MKGFLWEGVEEGKKNNLVKWEIVIKSKEEGGLGVGNLRNRNEALLAKWLWRFPKEPHSLW 410

Query: 61  ALVIRSVHGSTPFKWHTAGKDDSGLRSPW--ISI-SRSWLKIEELAYSNLGMVAELPFDY 120
             VIRS +G     W+         RSPW  ISI S+ +L   +    N   V      +
Sbjct: 411 HKVIRSKYGLQDNGWNAFPPIRGSXRSPWKDISIGSQLFLHCCKFEVGNGERVRFWEDGW 470

Query: 121 LELPSISEHW--------------------DSSSSSWSIFFRRLLKEEEIADFQNLLGII 180
           L+   + E +                     ++S SW+  FRR L E EI +   LL  +
Sbjct: 471 LDGGPLKEQFPRLFLLSRKHNQNISSFVDLSTNSLSWNFDFRRNLNEAEIEEAARLLQKV 530

Query: 181 SNKKVTEYFGRADMKALWKSKS-----------------------PRQV----------N 240
              ++++   R D +  WK ++                       P              
Sbjct: 531 EEVRLSQ--SRXDNRR-WKMEASGLFTCKSYCSFLSNNGMMQYFQPHSQIWKSKVPPKVK 590

Query: 241 ITIWIMLNGYLNFSSVMQRKLAAHCLSPHICPLCMADKE-----LQHLENVLQI------ 270
           I +W+   G LN    +QR+    CLSP  C LC A +E       H    +Q+      
Sbjct: 591 ILVWLAAKGKLNTCDQIQRRSPFICLSPQWCSLCKAKEESVNHIFLHCSYTIQLWWKLFQ 650

The following BLAST results are available for this feature:
BLAST of ClCG08G005070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH2.3e-1037.76Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
BLAST of ClCG08G005070 vs. TrEMBL
Match NameE-valueIdentityDescription
M5X2E2_PRUPE2.6e-2930.48Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016706mg PE=4 S... [more]
M5WJI4_PRUPE3.4e-2929.55Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020784mg PE=4 SV=1[more]
M5XHS0_PRUPE3.0e-2532.58Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S... [more]
M5WZI1_PRUPE2.5e-2430.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027214mg PE=4 SV=1[more]
M5W794_PRUPE2.3e-2230.63Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016462mg PE=4 S... [more]
BLAST of ClCG08G005070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657996200|ref|XP_008390463.1|2.6e-3035.27PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|595912903|ref|XP_007214504.1|3.7e-2930.48hypothetical protein PRUPE_ppa016706mg, partial [Prunus persica][more]
gi|595841355|ref|XP_007208194.1|4.9e-2929.55hypothetical protein PRUPE_ppa020784mg [Prunus persica][more]
gi|658027317|ref|XP_008349094.1|9.2e-2832.25PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|658048925|ref|XP_008360144.1|2.0e-2730.14PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G005070.1ClCG08G005070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G005070Cla007977Watermelon (97103) v1wcgwmB402
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G005070Wild cucumber (PI 183967)cpiwcgB524
ClCG08G005070Cucumber (Chinese Long) v2cuwcgB499
ClCG08G005070Melon (DHL92) v3.5.1mewcgB302
ClCG08G005070Cucurbita pepo (Zucchini)cpewcgB182
ClCG08G005070Cucurbita pepo (Zucchini)cpewcgB420
ClCG08G005070Bottle gourd (USVL1VR-Ls)lsiwcgB439
ClCG08G005070Cucumber (Gy14) v2cgybwcgB458
ClCG08G005070Melon (DHL92) v3.6.1medwcgB296
ClCG08G005070Silver-seed gourdcarwcgB0927
ClCG08G005070Cucumber (Chinese Long) v3cucwcgB517
ClCG08G005070Watermelon (97103) v2wcgwmbB336
ClCG08G005070Wax gourdwcgwgoB632
ClCG08G005070Cucumber (Gy14) v1cgywcgB624
ClCG08G005070Cucurbita maxima (Rimu)cmawcgB275
ClCG08G005070Cucurbita maxima (Rimu)cmawcgB682
ClCG08G005070Cucurbita moschata (Rifu)cmowcgB267
ClCG08G005070Cucurbita moschata (Rifu)cmowcgB684