ClCG08G004270 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G004270
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 13551611 .. 13553517 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAACGTTGGGAGACTTCATAGTCCAAACAGGCAAGCAGTTGGACGACATCATCACCGAATTAGAGGAGCTCCCTGCCAAGCTCTCCTTCAGCATAGAGGCTCTGAAGGAGGAACTCGAGCTAACAAACAGTGAAGTGGCCTTGATGAAGGAAGACATAGCAGAGTCTTCCAATAAGGGTGGCTCAATCTTGAAGGTAAAGATGCCCGAACCATCGACATTTAATGGTTTGAGAGATGCAAAGGACATTGAAAACTTCCTTTGGGACATCGAAGAGTACTTTAAGGTCGCAAAGATTGCGAAAGGATCACAAGTTAACCTCGCCTGTATGTATCTCGCCTCAAATGCCAAGCTATGGTGGCGCACCCGACTGCTCGATGACAAACACTCCGGGAGAGAACCAATTATCTCATGGGAAGCCATGAAGGAGAAACTCAGAAACTAGTTCCTCCCTAGCAATATGAGTTGGGTTGCTAGGAAGTCCCTCAAGAAGCTCAAGCATACTGGCTCGATACAAGCCTACGTCAAAGAGTTCAGCTTCTTAACCCTTGACGTCCAACACATGTCTGAGGAGGACAAATTATTCAACTTCATCTCGGGGCTCCAACCTTGGGCTCAGACAAAGCTGCGGAGGCAAGCCGTGAAGGACCTTCCTTCCGCCATCGTCACTGCAGATGCCCTACTGGATTTTAAGACCACAACCTCCACCACTTCTCCAGAGAAGATGCGGAAAGAAAGGGGGAGGGGCAACCATCATAAGAGCCGATCCAAATGTGAAGTGGACCGCAGCGACAAGGGGAAGGAGAAGGCTACCACGTCACTCTCCAATACAGCTGCTTCCTATGCAAGGGACCGCATTGGGTGCGAGCATGCCCGCGGCGAGAGAAGTTGAATACCATGCTTGAGGAAAAGAAGACCGAAGAAGACACCTGTCAGATAAACACCCTTTAGTTGTTGAGTACTATCACGTTTGTCTTGAAGTTGTGCCATTACAATTTAATGCACATAGTTATTCAGATAAACAACGTGGAGGTGTTTGCAATGCTAGACACCGGGGCTACCAACAGCTTCATTGCAACAAGGGTGAAGACGAAATTGGGCCTAACAGTGACCAAGAGTGATGGTCGTCTCAAAACTGCCAACACAGAGGCCCATCCGACAGAGGGTGCAACAATGACCCTACTGGAATTTGACTCATGGAGGAGCCGATGCAAATTCTCAATCGTTTCTCTAGATGATTTCGACATGGTGTTAGGTATGGAATTCCTAAGTGAGGCAAAAGTCTCCCTTGTGCCTCACTTATTCAGTACAAAGGTTCAGGATGAGACCACTCCGTGCTTCGTTTGAGCAGCAATGGTCAACTCGGGTTTGACAGGGCGTCGCTTTGCACCTGTTAGGCTAACCAAGCCATAGGAGAGCTTGACGGGAACTCGTGCGTTTGTCCACATCTAGCACAAGCGCCCCCGTAGGTCCGAGTGATGCACAGCTCGGACTGAACCTCCATTGTCCTGCCAGGTTAAAAGGCAGCAGCCCTAGGAGAGAGCCCATACCACCTGCCACTTGTGGAGTACAAGCACAAGCAGGCAGGGAACCCCAGTTGCGAGTCGTTAAACCTGACCACTGGGAGAGGACAAGACTCGATGAGGACGTAGGCTATCTCAAGCAAGGGAGGTTTATCACACCCCCAAAGTTTGAAGCACGCGACACGACAAGGTGAGTCGTGTCGCTGGGTGCGACACACCCCTAGGGCTACAAGGGGTTAGCCAAGGCAATCACCCATGGAGTAGTGGACATGCAAAGCTAGCGCATCATGCCCATGGCATAGCGTGGGCATATGGCCCATGCCCCGTGCCCCGAGTAGGCACGACGACGCATGCAGGGTCGAGCAACGTGGGGAGATGA

mRNA sequence

ATGGAAGGAACGTTGGGAGACTTCATAGTCCAAACAGGCAAGCAGTTGGACGACATCATCACCGAATTAGAGGAGCTCCCTGCCAAGCTCTCCTTCAGCATAGAGGCTCTGAAGGAGGAACTCGAGCTAACAAACAGTGAAATAAACAACGTGGAGGTGTTTGCAATGCTAGACACCGGGGCTACCAACAGCTTCATTGCAACAAGGGTGAAGACGAAATTGGGCCTAACAGTGACCAAGAGTGATGGTCGTCTCAAAACTGCCAACACAGAGGCCCATCCGACAGAGGGTGCAACAATGACCCTACTGGAATTTGACTCATGGAGGAGCCGATGCAAATTCTCAATCGTTTCTCTAGATGATTTCGACATGGTGTTAGGTCCGAGTGATGCACAGCTCGGACTGAACCTCCATTGTCCTGCCAGGTTAAAAGGCAGCAGCCCTAGGAGAGAGCCCATACCACCTGCCACTTGTGGAGTACAAGCACAAGCAGGCAGGGAACCCCAGTTGCGAGTCGTTAAACCTGACCACTGGGAGAGGACAAGACTCGATGAGGACGTAGGCTATCTCAAGCAAGGGAGCACGCGACACGACAAGGTGAGTCGTGTCGCTGGGTGCGACACACCCCTAGGGCTACAAGGGGTTAGCCAAGGCAATCACCCATGGAGTAGTGGACATGCAAAGCTAGCGCATCATGCCCATGGCATAGCGTGGGCATATGGCCCATGCCCCGTGCCCCGAGTAGGCACGACGACGCATGCAGGGTCGAGCAACGTGGGGAGATGA

Coding sequence (CDS)

ATGGAAGGAACGTTGGGAGACTTCATAGTCCAAACAGGCAAGCAGTTGGACGACATCATCACCGAATTAGAGGAGCTCCCTGCCAAGCTCTCCTTCAGCATAGAGGCTCTGAAGGAGGAACTCGAGCTAACAAACAGTGAAATAAACAACGTGGAGGTGTTTGCAATGCTAGACACCGGGGCTACCAACAGCTTCATTGCAACAAGGGTGAAGACGAAATTGGGCCTAACAGTGACCAAGAGTGATGGTCGTCTCAAAACTGCCAACACAGAGGCCCATCCGACAGAGGGTGCAACAATGACCCTACTGGAATTTGACTCATGGAGGAGCCGATGCAAATTCTCAATCGTTTCTCTAGATGATTTCGACATGGTGTTAGGTCCGAGTGATGCACAGCTCGGACTGAACCTCCATTGTCCTGCCAGGTTAAAAGGCAGCAGCCCTAGGAGAGAGCCCATACCACCTGCCACTTGTGGAGTACAAGCACAAGCAGGCAGGGAACCCCAGTTGCGAGTCGTTAAACCTGACCACTGGGAGAGGACAAGACTCGATGAGGACGTAGGCTATCTCAAGCAAGGGAGCACGCGACACGACAAGGTGAGTCGTGTCGCTGGGTGCGACACACCCCTAGGGCTACAAGGGGTTAGCCAAGGCAATCACCCATGGAGTAGTGGACATGCAAAGCTAGCGCATCATGCCCATGGCATAGCGTGGGCATATGGCCCATGCCCCGTGCCCCGAGTAGGCACGACGACGCATGCAGGGTCGAGCAACGTGGGGAGATGA

Protein sequence

MEGTLGDFIVQTGKQLDDIITELEELPAKLSFSIEALKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTEGATMTLLEFDSWRSRCKFSIVSLDDFDMVLGPSDAQLGLNLHCPARLKGSSPRREPIPPATCGVQAQAGREPQLRVVKPDHWERTRLDEDVGYLKQGSTRHDKVSRVAGCDTPLGLQGVSQGNHPWSSGHAKLAHHAHGIAWAYGPCPVPRVGTTTHAGSSNVGR

Homology

[Close]

BLAST of ClCG08G004270 vs. TrEMBL
Match: A5BE94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033320 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 1


Query: 37  LKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTE 96
           +++ L   ++ +N V+V A++D+GAT++F+ATR  T+LGL + +   R+K  N++A   +
Sbjct: 319 VQKSLMHVHAVVNGVQVKALMDSGATHNFVATRKATRLGLKLEEDTSRIKAINSKAQKIQ 378

Query: 97  GATMTL-LEFDSWRSRCKFSIVSLDDFDMVLGPSDAQLGLNLHCPARLKGSSPRREPIPP 156
           G    + ++   W+  C    V LDDFD++LG     +   L   +  +G    + PIP 
Sbjct: 379 GVAKNVPMQIGDWKGTCNLLCVPLDDFDLILG-----VDFLLRAKSSQQGDHQEQVPIPL 434

[Close]

BLAST of ClCG08G004270 vs. TrEMBL
Match: A0A0K9RBR7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_090960 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.2e-10
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 28  AKLSFSIEALKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKT 87
           AK+S    + K  L    + +N     A++DTGAT++F+A R  T+LGL  TK  G LKT
Sbjct: 641 AKVSTLPRSKKSSLMFVEAVVNGKASKALVDTGATHNFVALREATRLGLRYTKESGTLKT 700

Query: 88  ANTEAHPTEG-ATMTLLEFDSWRSRCKFSIVSLDDFDMVLG 128
            NT   P  G A    L+   W+     ++V +DDF MVLG
Sbjct: 701 VNTSPVPIHGVARGVSLQLGDWKGTVDLTVVPMDDFSMVLG 741

[Close]

BLAST of ClCG08G004270 vs. TrEMBL
Match: A0A0K9RYI0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_014300 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 28  AKLSFSIEALKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKT 87
           AK+S    + K  L    + +N     A++DTGAT++F+A R  T+LGL  TK  G LKT
Sbjct: 116 AKVSTLPRSKKSSLIFVEAMVNGKASKALVDTGATHNFVALRGATRLGLRCTKEPGTLKT 175

Query: 88  ANTEAHPTEGATMTL-LEFDSWRSRCKFSIVSLDDFDMVLG 128
            NT   P  G    + L+   W+     ++V +DDF MVLG
Sbjct: 176 VNTSPVPIHGVIRGVSLQLGDWKGTVDLTVVPMDDFSMVLG 216

[Close]

BLAST of ClCG08G004270 vs. TrEMBL
Match: A0A0K9QX25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_131450 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.5e-09
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 28  AKLSFSIEALKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKT 87
           AK+S    + K  L    + +N+    A++DTGAT++F+A R  T++GL  TK  G LKT
Sbjct: 38  AKVSTLPRSKKSSLMFVEAMVNDKASKALVDTGATHNFVALRKATRVGLRYTKEPGTLKT 97

Query: 88  ANTEAHPTEGATMTL-LEFDSWRSRCKFSIVSLDDFDMVLG 128
            NT   P  G    + L    W+     +++ +DDF MVLG
Sbjct: 98  VNTSPIPIHGVAQGVSLRLGEWKGTVDLTVIPMDDFSMVLG 138

[Close]

BLAST of ClCG08G004270 vs. TrEMBL
Match: A5BUN0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030159 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 32/92 (34.78%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 37  LKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTE 96
           +++ L   ++ +N V V A++D+GAT++F+ATR  T LGL + +   R+K  N++A   +
Sbjct: 321 VQKSLMHVHAMVNGVPVKALVDSGATHNFVATREVTGLGLKLEEDTSRIKAVNSKAQKIQ 380

Query: 97  GATMTL-LEFDSWRSRCKFSIVSLDDFDMVLG 128
           G    + ++   W+  C    V LDDFD++LG
Sbjct: 381 GVAKNIPMQIGDWKGTCSLLCVPLDDFDLILG 412

[Close]

BLAST of ClCG08G004270 vs. NCBI nr
Match: gi|848904433|ref|XP_012851858.1| (PREDICTED: uncharacterized protein LOC105971552 isoform X1 [Erythranthe guttata])

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 48  INNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTEGATMTLLEFDS 107
           IN  EV AM+D+GAT++F+A R   KLGLT++K   ++K  N+EA P +G T   L   S
Sbjct: 56  INGKEVKAMVDSGATHNFVAEREVKKLGLTLSKHASQVKAVNSEAGPVKGRTDVDLVIGS 115

Query: 108 WRSRCKFSIVSLDDFDMVLG 128
           W+ +C  + V LDDFD++LG
Sbjct: 116 WKGQCGLTAVPLDDFDVILG 135

[Close]

BLAST of ClCG08G004270 vs. NCBI nr
Match: gi|1009108218|ref|XP_015883646.1| (PREDICTED: uncharacterized protein LOC107419395 [Ziziphus jujuba])

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 37  LKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTE 96
           L+  L    ++IN  EV A+LDTGAT++F+A R    LGL++T+   R+K  N+ A P  
Sbjct: 390 LQHGLFYVAAKINGKEVMALLDTGATHNFVAQRRFKDLGLSITQHSSRIKAFNSAAQPVC 449

Query: 97  GATMTLLEFDSWRSRCKFSIVSLDDFDMVLG 128
             T+  L+   W S C F +V LDDFD++LG
Sbjct: 450 VMTVANLKIGGWDSECSFMVVPLDDFDVILG 480

[Close]

BLAST of ClCG08G004270 vs. NCBI nr
Match: gi|848919763|ref|XP_012856908.1| (PREDICTED: uncharacterized protein LOC105976161 [Erythranthe guttata])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 48  INNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTEGATMTLLEFDS 107
           IN  EV AM+D+GAT++F+A R   KLGLT++K   ++K  N+EA P  G T   L   S
Sbjct: 521 INGKEVKAMVDSGATHNFVAEREVKKLGLTLSKHASQVKAVNSEAGPVRGRTDVDLVIGS 580

Query: 108 WRSRCKFSIVSLDDFDMVLG 128
           W+ +C  + V LDDFD++LG
Sbjct: 581 WKGQCGLTAVPLDDFDVILG 600

[Close]

BLAST of ClCG08G004270 vs. NCBI nr
Match: gi|147860873|emb|CAN81056.1| (hypothetical protein VITISV_033320 [Vitis vinifera])

HSP 1 Score: 73.6 bits (179), Expect = 5.9e-10
Identity = 38/121 (31.40%), Postives = 68/121 (56.20%), Query Frame = 1


Query: 37  LKEELELTNSEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTE 96
           +++ L   ++ +N V+V A++D+GAT++F+ATR  T+LGL + +   R+K  N++A   +
Sbjct: 319 VQKSLMHVHAVVNGVQVKALMDSGATHNFVATRKATRLGLKLEEDTSRIKAINSKAQKIQ 378

Query: 97  GATMTL-LEFDSWRSRCKFSIVSLDDFDMVLGPSDAQLGLNLHCPARLKGSSPRREPIPP 156
           G    + ++   W+  C    V LDDFD++LG     +   L   +  +G    + PIP 
Sbjct: 379 GVAKNVPMQIGDWKGTCNLLCVPLDDFDLILG-----VDFLLRAKSSQQGDHQEQVPIPL 434

[Close]

BLAST of ClCG08G004270 vs. NCBI nr
Match: gi|672171958|ref|XP_008806059.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103718843 [Phoenix dactylifera])

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 46  SEINNVEVFAMLDTGATNSFIATRVKTKLGLTVTKSDGRLKTANTEAHPTEGATMTLLEF 105
           +++N   V AMLDTGATN+FI+ R   +L L +  S  ++K  N+ A P  G+    L F
Sbjct: 377 AKVNGKTVRAMLDTGATNNFISQREAARLELQIADSSSKIKAVNSGAMPVHGSAKVQLTF 436

Query: 106 DSWRSRCKFSIVSLDDFDMVLG 128
             W   C   +V LDDFD++LG
Sbjct: 437 GPWIGPCSLMVVPLDDFDLILG 458

The following BLAST results are available for this feature:

BLAST of ClCG08G004270 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BE94_VITVI	4.1e-10	31.40	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033320 PE=4 SV=1	[more]
A0A0K9RBR7_SPIOL	9.2e-10	39.60	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_090960 PE=4 SV=1	[more]
A0A0K9RYI0_SPIOL	2.7e-09	38.61	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_014300 PE=4 SV=1	[more]
A0A0K9QX25_SPIOL	3.5e-09	36.63	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_131450 PE=4 SV=1	[more]
A5BUN0_VITVI	1.0e-08	34.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030159 PE=4 SV=1	[more]

BLAST of ClCG08G004270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|848904433\|ref\|XP_012851858.1\|	2.4e-11	47.50	PREDICTED: uncharacterized protein LOC105971552 isoform X1 [Erythranthe guttata]	[more]
gi\|1009108218\|ref\|XP_015883646.1\|	2.4e-11	42.86	PREDICTED: uncharacterized protein LOC107419395 [Ziziphus jujuba]	[more]
gi\|848919763\|ref\|XP_012856908.1\|	3.1e-11	47.50	PREDICTED: uncharacterized protein LOC105976161 [Erythranthe guttata]	[more]
gi\|147860873\|emb\|CAN81056.1\|	5.9e-10	31.40	hypothetical protein VITISV_033320 [Vitis vinifera]	[more]
gi\|672171958\|ref\|XP_008806059.1\|	1.0e-09	41.46	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103718843 [Phoenix da...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021109	Peptidase_aspartic_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G004270.1	ClCG08G004270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain	unknown	SSF50630	Acid proteases	coord: 45..127 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 34..54 scor
None	No IPR available	PFAM	PF13975	gag-asp_proteas	coord: 46..127 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G004270	Wax gourd	wcgwgoB632
ClCG08G004270	Cucumber (Gy14) v1	cgywcgB626
ClCG08G004270	Cucurbita maxima (Rimu)	cmawcgB335
ClCG08G004270	Cucurbita maxima (Rimu)	cmawcgB815
ClCG08G004270	Cucurbita moschata (Rifu)	cmowcgB332
ClCG08G004270	Cucurbita moschata (Rifu)	cmowcgB811
ClCG08G004270	Wild cucumber (PI 183967)	cpiwcgB528
ClCG08G004270	Cucumber (Chinese Long) v2	cuwcgB502
ClCG08G004270	Melon (DHL92) v3.5.1	mewcgB304
ClCG08G004270	Watermelon (97103) v1	wcgwmB409
ClCG08G004270	Cucurbita pepo (Zucchini)	cpewcgB151
ClCG08G004270	Cucurbita pepo (Zucchini)	cpewcgB311
ClCG08G004270	Bottle gourd (USVL1VR-Ls)	lsiwcgB439
ClCG08G004270	Cucumber (Gy14) v2	cgybwcgB460
ClCG08G004270	Melon (DHL92) v3.6.1	medwcgB299
ClCG08G004270	Silver-seed gourd	carwcgB0087
ClCG08G004270	Silver-seed gourd	carwcgB0215
ClCG08G004270	Cucumber (Chinese Long) v3	cucwcgB520
ClCG08G004270	Watermelon (97103) v2	wcgwmbB336