ClCG08G002790 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G002790
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 6342425 .. 6343601 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAGACAAGAAGACCCAATTTGATATGAATACATTTGGGATTGTTGATGACCGTGAAGTCTTCACCCATTAATATTGGTCGTCTGTCTTGTTCAAGCATCTATTGAATAGTATAAAGACTATTTTGTGCGGGAAGAATGAGACCCCCAATATAAAGAAGGCAGACAATCCAAAGCACATCACATATTACTGTGTAAAGGGATTTATGCTTGCATTCCAGGTACGTGCTTTACCAATTAGGTCAATTCAATATGTATTTGTGATATTGAATATGTATGTGTAACAAAGTTTGTCTGTTATAGGGTTAGGCTTGCAGAATTACGTCCATATCTAGTAAGTTCGTAGCAACCAAAGTGAGCAAGAATGCAATACCACGAATCCTTAAGTAGACTTGTTCTCAAGCTCTATCCTATAAGTTGTTGGAGAGGAATGTATTCCAACTGAAGAAGATCATGGATCGTTTATAATTAACTATATGTTTAGATTAACCTACACGATCATTTAGAGTAATTTACACGATCGTTTAGAGTAATCTACATGATCGTTTAAAGTAATCTAGATGATTGCCTGGTTAATAATAAGTGATCGTTTAGACTTTTACTACACGATCACCTAGTTAAGACAAGCGATCGTTTATAGTAATCTACACGATTGCCTAGTTAAGAATAAGCAATCGTTTAGACTTTTACTACACGATCACCTAGTTAAGATAAGCGATCATTTATAGTAATCTACACGATCGCCTAGTTAAGAATAAGCGATCATTTAGAGTAATCTATATGATCACTTAGTAGTCAGTTGTTTTCAATATGCATTGACTTGTTCTCATCGTTACCTTACAGACTATTATTGTGGCGAAACTTGTGCCTACACAAGAGAAAGATAAGTACAAGGAGGATAAAGTAAGAGGACTTGAGCTAATGCCAGGTGTCAACACCACGTTAAAAGATCAACATTCTATTGACACTGAAACCAAAAATCACGAGACGTCTCATGAAGAACAAGTCGAGCAGCCTATCATAGAGCAACATATTACAGAGCATGAACCCCCTCAGTCACATAAAGAACAAGTTGACCACCCTATCACGGAGCAGCTTGGCATTGAGCCAGCAACACGTAGACTAGGTCTCACAATGGCCAGAAGGGTAAGAAAAGGCGTGTCGAATCTTTAG

mRNA sequence

ATGGAAAAAGACAAGAAGACCCAATTTGATATGAATACATTTGGGATTGTTGATGACCGTGAACATCTATTGAATAGTATAAAGACTATTTTGTGCGGGAAGAATGAGACCCCCAATATAAAGAAGGCAGACAATCCAAAGCACATCACATATTACTGTGTAAAGGGATTTATGCTTGCATTCCAGACTATTATTGTGGCGAAACTTGTGCCTACACAAGAGAAAGATAAGTACAAGGAGGATAAAGTAAGAGGACTTGAGCTAATGCCAGGTGTCAACACCACGTTAAAAGATCAACATTCTATTGACACTGAAACCAAAAATCACGAGACGTCTCATGAAGAACAAGTCGAGCAGCCTATCATAGAGCAACATATTACAGAGCATGAACCCCCTCAGTCACATAAAGAACAAGTTGACCACCCTATCACGGAGCAGCTTGGCATTGAGCCAGCAACACGTAGACTAGGTCTCACAATGGCCAGAAGGGTAAGAAAAGGCGTGTCGAATCTTTAG

Coding sequence (CDS)

ATGGAAAAAGACAAGAAGACCCAATTTGATATGAATACATTTGGGATTGTTGATGACCGTGAACATCTATTGAATAGTATAAAGACTATTTTGTGCGGGAAGAATGAGACCCCCAATATAAAGAAGGCAGACAATCCAAAGCACATCACATATTACTGTGTAAAGGGATTTATGCTTGCATTCCAGACTATTATTGTGGCGAAACTTGTGCCTACACAAGAGAAAGATAAGTACAAGGAGGATAAAGTAAGAGGACTTGAGCTAATGCCAGGTGTCAACACCACGTTAAAAGATCAACATTCTATTGACACTGAAACCAAAAATCACGAGACGTCTCATGAAGAACAAGTCGAGCAGCCTATCATAGAGCAACATATTACAGAGCATGAACCCCCTCAGTCACATAAAGAACAAGTTGACCACCCTATCACGGAGCAGCTTGGCATTGAGCCAGCAACACGTAGACTAGGTCTCACAATGGCCAGAAGGGTAAGAAAAGGCGTGTCGAATCTTTAG

Protein sequence

MEKDKKTQFDMNTFGIVDDREHLLNSIKTILCGKNETPNIKKADNPKHITYYCVKGFMLAFQTIIVAKLVPTQEKDKYKEDKVRGLELMPGVNTTLKDQHSIDTETKNHETSHEEQVEQPIIEQHITEHEPPQSHKEQVDHPITEQLGIEPATRRLGLTMARRVRKGVSNL
Homology
[Close]
BLAST of ClCG08G002790 vs. TrEMBL
Match: Q5GIT0_CUCME (Ulp1 peptidase-like OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-08
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 3   KDKKTQFDMNTFGIVDDRE-------------HLLNSIKTILCGKNETPNIKKADNPKHI 62
           KDKKTQFDM+  G VDD E              LLNS+KT L GK E   +KK  + K +
Sbjct: 160 KDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKKTRSSKAV 219

Query: 63  TYYCVKGFMLAFQT 64
           +YY +KG++LAFQT
Sbjct: 220 SYYNIKGYVLAFQT 233

[Close]
BLAST of ClCG08G002790 vs. NCBI nr
Match: gi|46398241|gb|AAS91799.1| (Ulp1-like peptidase [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 6.2e-08
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 1 

Query: 3   KDKKTQFDMNTFGIVDDRE-------------HLLNSIKTILCGKNETPNIKKADNPKHI 62
           KDKKTQFDM+  G VDD E              LLNS+KT L GK E   +KK  + K +
Sbjct: 160 KDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKKTRSSKAV 219

Query: 63  TYYCVKGFMLAFQT 64
           +YY +KG++LAFQT
Sbjct: 220 SYYNIKGYVLAFQT 233

The following BLAST results are available for this feature:
BLAST of ClCG08G002790 vs. TrEMBL
Match NameE-valueIdentityDescription
Q5GIT0_CUCME4.3e-0848.65Ulp1 peptidase-like OS=Cucumis melo PE=4 SV=1[more]
BLAST of ClCG08G002790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|46398241|gb|AAS91799.1|6.2e-0848.65Ulp1-like peptidase [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G002790.1ClCG08G002790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G002790Cla003810Watermelon (97103) v1wcgwmB403
ClCG08G002790Cla003777Watermelon (97103) v1wcgwmB410
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G002790Watermelon (97103) v2wcgwmbB336
ClCG08G002790Wax gourdwcgwgoB617
ClCG08G002790Wax gourdwcgwgoB633
ClCG08G002790Cucumber (Gy14) v1cgywcgB627
ClCG08G002790Cucurbita moschata (Rifu)cmowcgB032
ClCG08G002790Wild cucumber (PI 183967)cpiwcgB526
ClCG08G002790Cucumber (Chinese Long) v2cuwcgB500
ClCG08G002790Cucumber (Chinese Long) v2cuwcgB513
ClCG08G002790Watermelon (97103) v1wcgwmB406
ClCG08G002790Bottle gourd (USVL1VR-Ls)lsiwcgB440
ClCG08G002790Bottle gourd (USVL1VR-Ls)lsiwcgB445
ClCG08G002790Cucumber (Gy14) v2cgybwcgB457
ClCG08G002790Cucumber (Chinese Long) v3cucwcgB518