ClCG08G002700 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002700
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 5976188 .. 5976892 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGTTTTGGAAATTGTTGTGGGCCCTCTCTGTCCCACAAATAACTAAGATTTTCCTTTGGCGTGTGTGCCTTAACTCTCTTCCAACATGTCAAGCTTTGGCTCAACGATCAATTATCAGTTGCGAGGATTTCTTTTTATGCTGGGAAGTAAACAGATCTGGAACCTTTGGTCGATCTCCTAATTATTGTTTTTTCGACTTGCACCACTCTAATGTTGTTTCTCTCGCTTGCAAGGCCTTGGAGCTTTTAAGCCCTCTTGATATCAGAATATTTGCGCTTATTGCTTCTACTATTTGGCACAGACGCCACCTAGTGGTTTTTAATGGTTACAACAAGCCTAAACATGATCCTATCTAGTGGGTGATTAGCGTGGTGGAATATCTCGGCTAGCTTTATCATCTGAACCCCACATAGCTGGCTCTCCCTTCCGCAATTGTTGACAACATCTCCCATTGGTATGCCCCTCATCTTGGCACGTTTAAGTTAAATTCTGACACTGCTTTACTTGATGGAGAAGTGGGTATCGAAGCAATTGTTCGTGACGTGATTACTGATGTGTTGCTTGCTTTGGAAAGCCATTTTGTTTTTGTTGGATCCATGGAACTCGTTGAGGTCATTGCCATGCTTACTAGTATTTCTACGACCCTTGAGGCTGGCATTTCTCCGCTCTACATCGAAACTAATTCCATAATTTTTTGA

mRNA sequence

ATGGAAAAGTTTTGGAAATTGTTGTGGGCCCTCTCTGTCCCACAAATAACTAAGATTTTCCTTTGGCGTGTGTGCCTTAACTCTCTTCCAACATGTCAAGCTTTGGCTCAACGATCAATTATCAGTTGCGAGGATTTCTTTTTATGCTGGGAAGTAAACAGATCTGGAACCTTTGGTCGATCTCCTAATTATTGTTTTTTCGACTTGCACCACTCTAATGTTGTTTCTCTCGCTTGCAAGGCCTTGGAGCTTTTAAGCCCTCTTGATATCAGAATATTTGCGCTTATTGCTTCTACTATTTGGCACAGACGCCACCTAGTGCTGGCTCTCCCTTCCGCAATTGTTGACAACATCTCCCATTGGTATGCCCCTCATCTTGGCACGTTTAAGTTAAATTCTGACACTGCTTTACTTGATGGAGAAGTGGGTATCGAAGCAATTGTTCGTGACGTGATTACTGATGTGTTGCTTGCTTTGGAAAGCCATTTTGTTTTTGTTGGATCCATGGAACTCGTTGAGGTCATTGCCATGCTTACTAGTATTTCTACGACCCTTGAGGCTGGCATTTCTCCGCTCTACATCGAAACTAATTCCATAATTTTTTGA

Coding sequence (CDS)

ATGGAAAAGTTTTGGAAATTGTTGTGGGCCCTCTCTGTCCCACAAATAACTAAGATTTTCCTTTGGCGTGTGTGCCTTAACTCTCTTCCAACATGTCAAGCTTTGGCTCAACGATCAATTATCAGTTGCGAGGATTTCTTTTTATGCTGGGAAGTAAACAGATCTGGAACCTTTGGTCGATCTCCTAATTATTGTTTTTTCGACTTGCACCACTCTAATGTTGTTTCTCTCGCTTGCAAGGCCTTGGAGCTTTTAAGCCCTCTTGATATCAGAATATTTGCGCTTATTGCTTCTACTATTTGGCACAGACGCCACCTAGTGCTGGCTCTCCCTTCCGCAATTGTTGACAACATCTCCCATTGGTATGCCCCTCATCTTGGCACGTTTAAGTTAAATTCTGACACTGCTTTACTTGATGGAGAAGTGGGTATCGAAGCAATTGTTCGTGACGTGATTACTGATGTGTTGCTTGCTTTGGAAAGCCATTTTGTTTTTGTTGGATCCATGGAACTCGTTGAGGTCATTGCCATGCTTACTAGTATTTCTACGACCCTTGAGGCTGGCATTTCTCCGCTCTACATCGAAACTAATTCCATAATTTTTTGA

Protein sequence

MEKFWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSIISCEDFFLCWEVNRSGTFGRSPNYCFFDLHHSNVVSLACKALELLSPLDIRIFALIASTIWHRRHLVLALPSAIVDNISHWYAPHLGTFKLNSDTALLDGEVGIEAIVRDVITDVLLALESHFVFVGSMELVEVIAMLTSISTTLEAGISPLYIETNSIIF

Homology

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BLAST of ClCG08G002700 vs. NCBI nr
Match: gi|645252183|ref|XP_008232007.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume])

HSP 1 Score: 60.5 bits (145), Expect = 4.0e-06
Identity = 58/213 (27.23%), Postives = 82/213 (38.50%), Query Frame = 1


Query: 4   FWKLLWALSVPQITKIFLWRVCLNSLPTCQALAQRSII---SCEDFFLCWEVNRSGTFGR 63
           FWK LW L VP   KI LWR  LN LPT   L QR ++    C D     E      +G 
Sbjct: 223 FWKKLWHLEVPNKVKILLWRASLNILPTALNLVQRKVLVSAHCSDCETAVEDGIHALWGC 282

Query: 64  SPNYCFFDLHHSNVVSLACKA---------LELLSPLDIRIFALIASTIWHRRHLVLALP 123
             +  F+ L   N+ S A +             LS  D+  F      +W  R+    +P
Sbjct: 283 KRSRWFWALTSFNIDSAARQGSVADFLEVMFHTLSDGDLERFVCCCWRVWKFRNEPARVP 342

Query: 124 SAIVDNISHWYAPHLGTFKLNSDTAL--LDGEVGIEAIVRDVITDVLLALESHFVFVGSM 183
             I      W  P + T  LN D A+    G  G+   +RD   + +      F + G  
Sbjct: 343 RFI-----RWIKPPVSTLVLNCDLAVGQAGGIRGVGGALRDSACNFIWG----FAYQGPA 402

Query: 184 ELVEVIAMLTSISTTL----EAGISPLYIETNS 199
            L  +     +I   L    E G+S   + ++S
Sbjct: 403 SLDVLATYCAAIHLGLLKAVELGVSDFLVASDS 426

The following BLAST results are available for this feature:

BLAST of ClCG08G002700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|645252183\|ref\|XP_008232007.1\|	4.0e-06	27.23	PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002700.1	ClCG08G002700.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002700	Wild cucumber (PI 183967)	cpiwcgB526
ClCG08G002700	Cucumber (Chinese Long) v2	cuwcgB500
ClCG08G002700	Watermelon (97103) v1	wcgwmB403
ClCG08G002700	Watermelon (97103) v1	wcgwmB410
ClCG08G002700	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002700	Cucumber (Gy14) v2	cgybwcgB457
ClCG08G002700	Cucumber (Chinese Long) v3	cucwcgB518
ClCG08G002700	Watermelon (97103) v2	wcgwmbB336
ClCG08G002700	Wax gourd	wcgwgoB633
ClCG08G002700	Cucumber (Gy14) v1	cgywcgB627