ClCG08G002250 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002250
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 4748307 .. 4749035 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGCAACTTCACTCCATCTCCAGAATGCTAGTGCAGCTTCGCCCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTTAAAAATGCTAGTGCAGCTTCGCTCCATCTCCAAAATGGTGGTGCAGCTTCGCGACATTTCCAAAACGTTGGTGCATATTCGCTTCATCTTCGAAATGTTGATGCAACTTCACTCCACCTCCAAAATATTGATGTAGCTTCACTCTATCTCCAAATATGTTAATGCAGCTTCGCTCCATCTCCAAAATGCTGGTGCAGCTTCGCGGCATTTCCAAAATATTGGTGCAGATCTGCCTCCTCTACTAAATATTGGTGCGACTTTGCTTCGTCTCCAAAATATTAGTGCAACTTTGCCTCTTCTCCAAAATGTTGGTGCAGCTTCACGTCATTTTCAAAATGTTGGTGCAGCTTCACTCCGTCTCCATAAAGGTTGGTGCATTCTTGTTACATCTCCAAATATGATGATACAGCTTCACTCTATCTCTAGAATGCTGGTGTAACTTTGCTATCTCTAGAATGTTGGTGCAGCTCTGCCTCCTCTCCAAAATGTTGGCACAGTTTCACTTAATCTCCAAAATGTTGGTGCAGCTCTGCCTCATCTACTAAATACTGGTGCGATTTTGCTTCATCTCCAAAATGTTGGTACAAGTCTACCTTCTCTCCAAAATATTGGTGCATCTTCACTTCATCCATCTTTAGAATGA

mRNA sequence

ATGTCGATGCAACTTCACTCCATCTCCAGAATGCTAGTGCAGCTTCGCCCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTTAAAAATGCTAGTGCAGCTTCGCTCCATCTCCAAAATGGTGCTTCACTCTATCTCCAAATATGTTAATGCAGCTTCGCTCCATCTCCAAAATGCTGGTGCAGCTTCGCGGCATTTCCAAAATATTGGTGCAGATCTGCCTCCTCTACTAAATATTGGTGCGACTTTGCTTCGTCTCCAAAATATTAGTGCAACTTTGCCTCTTCTCCAAAATGTTGGTGCAGCTTCACGTCATTTTCAAAATGTTGGTGCAGCTTCACTCCGTCTCCATAAAGCTCTGCCTCCTCTCCAAAATGTTGGCACAGTTTCACTTAATCTCCAAAATGTTGGTGCAGCTCTGCCTCATCTACTAAATACTGGTGCGATTTTGCTTCATCTCCAAAATGTTGGTACAAGTCTACCTTCTCTCCAAAATATTGGTGCATCTTCACTTCATCCATCTTTAGAATGA

Coding sequence (CDS)

ATGTCGATGCAACTTCACTCCATCTCCAGAATGCTAGTGCAGCTTCGCCCCATCTCCAAAATGTTGGTGCATCTTCGCTACATCTTAAAAATGCTAGTGCAGCTTCGCTCCATCTCCAAAATGGTGCTTCACTCTATCTCCAAATATGTTAATGCAGCTTCGCTCCATCTCCAAAATGCTGGTGCAGCTTCGCGGCATTTCCAAAATATTGGTGCAGATCTGCCTCCTCTACTAAATATTGGTGCGACTTTGCTTCGTCTCCAAAATATTAGTGCAACTTTGCCTCTTCTCCAAAATGTTGGTGCAGCTTCACGTCATTTTCAAAATGTTGGTGCAGCTTCACTCCGTCTCCATAAAGCTCTGCCTCCTCTCCAAAATGTTGGCACAGTTTCACTTAATCTCCAAAATGTTGGTGCAGCTCTGCCTCATCTACTAAATACTGGTGCGATTTTGCTTCATCTCCAAAATGTTGGTACAAGTCTACCTTCTCTCCAAAATATTGGTGCATCTTCACTTCATCCATCTTTAGAATGA

Protein sequence

MSMQLHSISRMLVQLRPISKMLVHLRYILKMLVQLRSISKMVLHSISKYVNAASLHLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRHFQNVGAASLRLHKALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQNIGASSLHPSLE

Homology

[Close]

BLAST of ClCG08G002250 vs. NCBI nr
Match: gi|119571855|gb|EAW51470.1| (hCG2042692, partial [Homo sapiens])

HSP 1 Score: 69.7 bits (169), Expect = 5.8e-09
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 1


Query: 54  SLHLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRHFQNVGAA 113
           +LHL+N G  + H +N G   P L N G     L+N     P L+N G  +   +N G  
Sbjct: 24  ALHLENNGCLAPHVENNGRLAPHLENKGRLTPHLENNGRLTPHLENKGRLTPDLENNGCL 83

Query: 114 SLRLH---KALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQNIGAS 173
           +  L    +  P L+N G ++ +L+N G   PHL N G +  HL+N G   P L+N G  
Sbjct: 84  TPHLENNGRLTPDLENNGRLTPDLENNGRLTPHLENNGRLTPHLENNGRLTPHLENNG-- 143

Query: 174 SLHPSLE 178
            L P LE
Sbjct: 144 RLAPQLE 148

[Close]

BLAST of ClCG08G002250 vs. NCBI nr
Match: gi|119571855|gb|EAW51470.1| (hCG2042692, partial [Homo sapiens])

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 1


Query: 56  HLQNAGAASRHFQNIGADLPPLLNIGATLLRLQNISATLPLLQNVGAASRHFQNVGAASL 115
           HL+N G  +   +N G   P L N G     L+N     P L+N G  + H +N G  + 
Sbjct: 66  HLENKGRLTPDLENNGCLTPHLENNGRLTPDLENNGRLTPDLENNGRLTPHLENNGRLTP 125

Query: 116 RLH---KALPPLQNVGTVSLNLQNVGAALPHLLNTGAILLHLQNVGTSLPSLQNIGASSL 175
            L    +  P L+N G ++  L+N G  +PHL N G +  HL+N G   P L+N G   L
Sbjct: 126 HLENNGRLTPHLENNGRLAPQLENNGRLVPHLENNGRLTPHLENNGPLAPHLENNG--RL 185

Query: 176 HPSLE 178
            P LE
Sbjct: 186 APQLE 188

The following BLAST results are available for this feature:

BLAST of ClCG08G002250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|119571855\|gb\|EAW51470.1\|	5.8e-09	35.43	hCG2042692, partial [Homo sapiens]	[more]
gi\|119571855\|gb\|EAW51470.1\|	4.9e-08	35.20	hCG2042692, partial [Homo sapiens]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002250.1	ClCG08G002250.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002250	Cucurbita pepo (Zucchini)	cpewcgB532
ClCG08G002250	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002250	Cucumber (Gy14) v2	cgybwcgB457
ClCG08G002250	Melon (DHL92) v3.6.1	medwcgB297
ClCG08G002250	Cucumber (Chinese Long) v3	cucwcgB518
ClCG08G002250	Watermelon (97103) v2	wcgwmbB336
ClCG08G002250	Wax gourd	wcgwgoB633
ClCG08G002250	Cucumber (Gy14) v1	cgywcgB563
ClCG08G002250	Cucurbita moschata (Rifu)	cmowcgB429
ClCG08G002250	Wild cucumber (PI 183967)	cpiwcgB526
ClCG08G002250	Cucumber (Chinese Long) v2	cuwcgB500
ClCG08G002250	Melon (DHL92) v3.5.1	mewcgB297