ClCG07G015800 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G015800
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionFom-2 protein
LocationCG_Chr07 : 32281502 .. 32281940 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTTGCAAGTTTATGATTGTGAGTCCTCTCATCCATTTTGGATCACTTGAAAATGTTGTAATGGTTGATTTAAGGAGTGGTGCATCACAACTTCCTCGACAACTCGAGCACCTCACAGCTTTGATATCATTGCATATTTCGTATTTTGATGACGTTGAAGCTCTATTTGAATGGTTCGAAAATTTCACGTTTTTGGAAACATTAAAGGTTTAAAATTGCAAAATTTTGAAAAGCTTCGTCTCATGTAGCCATGTCAAATCTGATCAGATTACATAATCTGTGTCTACGAGTTTATCGATGTTTGCAGCTTGGACTTGACAATGGTTGTTTTGAGGTGGTGAAGACTTGCCATGAGAGTATCCATTTTAAAAAGTCATCTCTAATACCTAGTATTAGCATTGAAAATTTTGTTGCAATTGAATCACAAGAATGA

mRNA sequence

ATGGAGACTTGCAAGTTTATGATTGTGAGTCCTCTCATCCATTTTGGATCACTTGAAAATGTTGTAATGGTTGATTTAAGGAGTGGTGCATCACAACTTCCTCGACAACTCGAGCACCTCACAGCTTTGATATCATTGCATATTTCGTATTTTGATGACGTTGAAGCTCTATTTGAATGGTTCGAAAATTTCACGTTTTTGGAAACATTAAAGCTTGGACTTGACAATGGTTGTTTTGAGGTGGTGAAGACTTGCCATGAGAGTATCCATTTTAAAAAGTCATCTCTAATACCTAGTATTAGCATTGAAAATTTTGTTGCAATTGAATCACAAGAATGA

Coding sequence (CDS)

ATGGAGACTTGCAAGTTTATGATTGTGAGTCCTCTCATCCATTTTGGATCACTTGAAAATGTTGTAATGGTTGATTTAAGGAGTGGTGCATCACAACTTCCTCGACAACTCGAGCACCTCACAGCTTTGATATCATTGCATATTTCGTATTTTGATGACGTTGAAGCTCTATTTGAATGGTTCGAAAATTTCACGTTTTTGGAAACATTAAAGCTTGGACTTGACAATGGTTGTTTTGAGGTGGTGAAGACTTGCCATGAGAGTATCCATTTTAAAAAGTCATCTCTAATACCTAGTATTAGCATTGAAAATTTTGTTGCAATTGAATCACAAGAATGA

Protein sequence

METCKFMIVSPLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISLHISYFDDVEALFEWFENFTFLETLKLGLDNGCFEVVKTCHESIHFKKSSLIPSISIENFVAIESQE
Homology
[Close]
BLAST of ClCG07G015800 vs. TrEMBL
Match: A0A0A0KW56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015840 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.9e-15
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 10   SPLIHFGSLENVVMVDLR-SGASQLPRQLEHLTALISLHISYFDDVEALFEWFENFTFLE 69
            SPL+H GSLEN+V+VDL  SGA QLP+QLE LT+L SLHIS+F  +EAL EWF NFT LE
Sbjct: 973  SPLVHLGSLENLVLVDLDGSGAIQLPQQLEQLTSLRSLHISHFSGIEALPEWFGNFTCLE 1032

Query: 70   TLKL 73
            TLKL
Sbjct: 1033 TLKL 1036

[Close]
BLAST of ClCG07G015800 vs. NCBI nr
Match: gi|449469166|ref|XP_004152292.1| (PREDICTED: putative disease resistance protein RGA3 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-15
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 

Query: 10   SPLIHFGSLENVVMVDLR-SGASQLPRQLEHLTALISLHISYFDDVEALFEWFENFTFLE 69
            SPL+H GSLEN+V+VDL  SGA QLP+QLE LT+L SLHIS+F  +EAL EWF NFT LE
Sbjct: 973  SPLVHLGSLENLVLVDLDGSGAIQLPQQLEQLTSLRSLHISHFSGIEALPEWFGNFTCLE 1032

Query: 70   TLKL 73
            TLKL
Sbjct: 1033 TLKL 1036

[Close]
BLAST of ClCG07G015800 vs. NCBI nr
Match: gi|659108004|ref|XP_008453966.1| (PREDICTED: putative disease resistance protein RGA3 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 10   SPLIHFGSLENVVMVDLR-SGASQLPRQLEHLTALISLHISYFDDVEALFEWFENFTFLE 69
            SPL+H GSLEN+V+VDL  SGA QLP QLE LT+L SLH+S+F  +EAL EWF NFT LE
Sbjct: 961  SPLVHLGSLENLVLVDLEGSGAIQLPHQLEQLTSLRSLHLSHFSGIEALPEWFGNFTSLE 1020

Query: 70   TLKL 73
             LKL
Sbjct: 1021 ILKL 1024

The following BLAST results are available for this feature:
BLAST of ClCG07G015800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW56_CUCSA6.9e-1571.88Uncharacterized protein OS=Cucumis sativus GN=Csa_4G015840 PE=3 SV=1[more]
BLAST of ClCG07G015800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469166|ref|XP_004152292.1|9.9e-1571.88PREDICTED: putative disease resistance protein RGA3 [Cucumis sativus][more]
gi|659108004|ref|XP_008453966.1|6.4e-1468.75PREDICTED: putative disease resistance protein RGA3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043531 ADP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G015800.1ClCG07G015800.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF52047RNI-likecoord: 15..78
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G015800Bhi01G002076Wax gourdwcgwgoB577
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G015800Silver-seed gourdcarwcgB0187
ClCG07G015800Silver-seed gourdcarwcgB0670
ClCG07G015800Cucumber (Chinese Long) v3cucwcgB337
ClCG07G015800Cucumber (Chinese Long) v3cucwcgB340
ClCG07G015800Watermelon (97103) v2wcgwmbB307
ClCG07G015800Cucumber (Gy14) v1cgywcgB120
ClCG07G015800Cucurbita maxima (Rimu)cmawcgB239
ClCG07G015800Cucurbita maxima (Rimu)cmawcgB747
ClCG07G015800Cucurbita moschata (Rifu)cmowcgB226
ClCG07G015800Cucurbita moschata (Rifu)cmowcgB749
ClCG07G015800Wild cucumber (PI 183967)cpiwcgB337
ClCG07G015800Cucumber (Chinese Long) v2cuwcgB320
ClCG07G015800Melon (DHL92) v3.5.1mewcgB494
ClCG07G015800Watermelon (97103) v1wcgwmB372
ClCG07G015800Cucurbita pepo (Zucchini)cpewcgB566
ClCG07G015800Cucurbita pepo (Zucchini)cpewcgB791
ClCG07G015800Bottle gourd (USVL1VR-Ls)lsiwcgB408
ClCG07G015800Cucumber (Gy14) v2cgybwcgB298
ClCG07G015800Melon (DHL92) v3.6.1medwcgB489