ClCG07G012030 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G012030
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCG_Chr07 : 28371747 .. 28373248 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCTAAAGAAGATATGTCTTATTTGCAAAATTGAAGATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATGTAGGACAGATATTTGAGTGCTGATCACTCGGGTTAGCGGAGAGTTTGCTAGATAGACATTATCTAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAAGTACCTGGGAAAAAACAGAATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAATAGGAAAGTCTTATATTTTGATATTAATTCATCAAGTTGACATCATGCACTTGTTACATAACAACCCCTTAGAGTAGCAAGGTGGACAATGAGTGAGAGAAAGGGAGGTTTCAACATTTAATTTAAACTTGATTTTTTAATACTCACTCCAATTTTGTTTGGTGCTTATGTCTATTAATTAATTTAAAAGAATTACAATTAATTTATCTTTCATTACTTTTTCATCACTATTAAAATTAGCTACAAAATATCTTCACATCATATATTCTAAATTGGCTATCTAAAAAGACAACTTTAAATACAAAAATAGTATTATTAAAAATTCAGTGGTAAAATAGTAAAACAATAAAATTTAAAGACAAAATGAAAATAAAATTTACAATGCTAACCAACGTAACTTAGGGATTAGATAAAAACTAAACTTAAAACTTAAAGATAAAAAGTGTAATATGGAAGTATATTTTTTTAATGTTATTATTATTATTTATTTATTTTGAATTGAGAGACACATGAGACATTTAACCTAAAATGTATATTATAATGTTTGGTTGTAAATAAGGGAAATGAAAAATAGAGGGTAAGGTTTAATTGATGAGAGAGAGAGGAGGAAGAGAAGTTGAAATGGAAACACACCGAGGGAATTTATTATTTTAAAAAACTTCAAATTGGATTAATAATAAAGCCTGTCGACAGGGTGACGAACAATCATAAAATGAAGATGNCCTTAAGTTTTGCATTTACTTTCTATTTGGTCCTTCGATTTCAAAATGTTACGTTTTTACCTTTGAGTTTCATTTCAATTTGGTCCCTAGGGTGAAATCAAAATAGGCAATAAGGTAGTAGGAAGACATGAAAATAAATGTATTGTTTCAAAAATGTTTCCTAAAGAAGATATGTCTTATTTGCAAAATTGAAGATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATGTAGGACAGATATTTGAGTGCTGATCACTCGGGTTAGCGGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA

mRNA sequence

ATGTTTCCTAAAGAAGATATATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAACGGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA

Coding sequence (CDS)

ATGTTTCCTAAAGAAGATATATCCGTTGATATGCTTTTCAATCCATTAGGAGTCCTCTCACGAATGAATCTAGTAAGCATACAACGAGTTCATGGATATTTAAACCCAACGGAGAGTTTGCTAGATAGACATTATCGAGTAGTACCTTTTGGTGAGAGATATGTACAAAAGGCTTCTAGAAAACTAGTTTTTTTTTCTCAATTATATGAAGCTAGTAAGCATACAACGAGTTCATGGATATTTGATGGAAGAACGAAAACTCTGAACAACCTGTTATAA

Protein sequence

MFPKEDISVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQLYEASKHTTSSWIFDGRTKTLNNLL
Homology
[Close]
BLAST of ClCG07G012030 vs. Swiss-Prot
Match: RPOB_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-17
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. Swiss-Prot
Match: RPOB_JASNU (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.7e-17
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 9   VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQL 68
           VDM+FNPLGV SRMN+  I      L     LLDRHYR+VPF ERY Q+ASRKLV FS+L
Sbjct: 842 VDMVFNPLGVPSRMNVGQIFECS--LGLAGGLLDRHYRIVPFDERYEQEASRKLV-FSEL 901

Query: 69  YEASKHTTSSWIFD 83
           YEASK TT+ W+F+
Sbjct: 902 YEASKQTTNPWVFE 912

[Close]
BLAST of ClCG07G012030 vs. Swiss-Prot
Match: RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.7e-17
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. Swiss-Prot
Match: RPOB_NICSY (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.7e-17
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. Swiss-Prot
Match: RPOB_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.7e-17
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1   MFPKEDI-------SVDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P++D+       SVDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ER
Sbjct: 833 ILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T + W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTANPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. TrEMBL
Match: A0A0S2IE41_9ROSI (DNA-directed RNA polymerase subunit beta OS=Cucurbita argyrosperma GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. TrEMBL
Match: X2F2M7_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. TrEMBL
Match: X2EY81_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. TrEMBL
Match: X2EY24_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. TrEMBL
Match: X2F838_LAGSI (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. TAIR10
Match: ATCG00190.1 (ATCG00190.1 RNA polymerase subunit beta)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-17
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 9   VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGERYVQKASRKLVFFSQL 68
           VDM+FNPLGV SRMN+  I      L    SLLDRHYR+ PF ERY Q+ASRKLV FS+L
Sbjct: 850 VDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIAPFDERYEQEASRKLV-FSEL 909

Query: 69  YEASKHTTSSWIFD 83
           YEASK T + W+F+
Sbjct: 910 YEASKQTANPWVFE 920

[Close]
BLAST of ClCG07G012030 vs. NCBI nr
Match: gi|590000407|ref|YP_009004036.1| (RNA polymerase beta subunit [Cucumis hystrix])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. NCBI nr
Match: gi|952954786|gb|ALO22144.1| (RpoB (plastid) [Cucurbita ficifolia])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. NCBI nr
Match: gi|595645751|gb|AHM89205.1| (RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. NCBI nr
Match: gi|346578183|ref|YP_004841775.1| (RNA polymerase beta subunit [Cucumis melo subsp. melo])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

[Close]
BLAST of ClCG07G012030 vs. NCBI nr
Match: gi|952954810|gb|ALO22167.1| (RpoB (plastid) [Cucurbita foetidissima])

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 1   MFPKEDIS-------VDMLFNPLGVLSRMNLVSIQRVHGYLNPTESLLDRHYRVVPFGER 60
           + P+ED+        VDM+FNPLGV SRMN+  I      L    SLLDRHYR+VPF ER
Sbjct: 833 ILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECS--LGLAGSLLDRHYRIVPFDER 892

Query: 61  YVQKASRKLVFFSQLYEASKHTTSSWIFD 83
           Y Q+ASRKLV FS+LYEASK T S W+F+
Sbjct: 893 YEQEASRKLV-FSELYEASKQTASPWVFE 918

The following BLAST results are available for this feature:
BLAST of ClCG07G012030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOB_CUCSA2.3e-1757.30DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=rpoB PE=3 SV=2[more]
RPOB_JASNU8.7e-1763.51DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=... [more]
RPOB_NICTO8.7e-1755.06DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE... [more]
RPOB_NICSY8.7e-1755.06DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris GN=rpoB PE=3 SV... [more]
RPOB_SOLLC8.7e-1755.06DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV... [more]
BLAST of ClCG07G012030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IE41_9ROSI2.6e-1557.30DNA-directed RNA polymerase subunit beta OS=Cucurbita argyrosperma GN=rpoB PE=3 ... [more]
X2F2M7_LAGSI2.6e-1557.30DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=... [more]
X2EY81_LAGSI2.6e-1557.30DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=... [more]
X2EY24_LAGSI2.6e-1557.30DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=... [more]
X2F838_LAGSI2.6e-1557.30DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria GN=rpoB PE=3 SV=... [more]
BLAST of ClCG07G012030 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00190.11.9e-1762.16ATCG00190.1 RNA polymerase subunit beta[more]
BLAST of ClCG07G012030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590000407|ref|YP_009004036.1|3.7e-1557.30RNA polymerase beta subunit [Cucumis hystrix][more]
gi|952954786|gb|ALO22144.1|3.7e-1557.30RpoB (plastid) [Cucurbita ficifolia][more]
gi|595645751|gb|AHM89205.1|3.7e-1557.30RNA polymerase beta subunit (chloroplast) [Lagenaria siceraria][more]
gi|346578183|ref|YP_004841775.1|3.7e-1557.30RNA polymerase beta subunit [Cucumis melo subsp. melo][more]
gi|952954810|gb|ALO22167.1|3.7e-1557.30RpoB (plastid) [Cucurbita foetidissima][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G012030.1ClCG07G012030.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3DG3DSA:2.40.270.10coord: 2..74
score: 7.
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 4..84
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G012030Wax gourdwcgwgoB574
ClCG07G012030Cucumber (Gy14) v1cgywcgB117
ClCG07G012030Cucurbita maxima (Rimu)cmawcgB242
ClCG07G012030Cucurbita moschata (Rifu)cmowcgB230
ClCG07G012030Wild cucumber (PI 183967)cpiwcgB343
ClCG07G012030Cucumber (Chinese Long) v2cuwcgB326
ClCG07G012030Melon (DHL92) v3.5.1mewcgB486
ClCG07G012030Watermelon (97103) v1wcgwmB371
ClCG07G012030Cucurbita pepo (Zucchini)cpewcgB571
ClCG07G012030Bottle gourd (USVL1VR-Ls)lsiwcgB406
ClCG07G012030Cucumber (Gy14) v2cgybwcgB304
ClCG07G012030Melon (DHL92) v3.6.1medwcgB480
ClCG07G012030Silver-seed gourdcarwcgB0121
ClCG07G012030Cucumber (Chinese Long) v3cucwcgB345
ClCG07G012030Watermelon (97103) v2wcgwmbB307