ClCG07G011820 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G011820
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRING finger protein
LocationCG_Chr07 : 28043016 .. 28046243 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTTGACCTTAATAAAATAAGGGTTCTTGTAACGTGGAGGAGAAGTGCATGAGAAATGTATATCTTTTTACTTTAACATAAGGTTTCTTTTTTTTTTTTTTTTTTTCCTTATTCTTCTTCTTTTAGTATATACATAGCTTATTCATCGCCGTGCATTATGGGCTTGATTTAAGTTTAGATTAGCTTAATTTAATTGGAATTTAATTAAAATATATATAATGTAGAGGGTGATGGTTATGATGAGTTTTGGCTTAGGAGCAAAGTCTTGTTTGGGTCCCATAATAATTAACTTTTTCCTTAGTTCTTTGAGAACGTGGGAAGGATATTGGCCACCCTATCCTTCCAATCTATTATATCTTTCCCACTACTTGTAAATCTTCTTTCTTTTCTTTTTTCTTTGCAGAAATTAGGGTCATCTTTTTTTCTTTTTTCTTTTTTTTTTCCTTATTCTATCTTACTGATTGGAAAAATTATTTGAGGCTAATAGAAAGTGATAAGCAATTTTACACTCTTTGAATGTAGGAATGACATTAAAAAATAATAATAATGAATCACTAATGTACCGAATCCCATCAGAACTCTGCAGTTAAGCGTACTTGGGTAAGAGTAATACTAAATTGGGTGACCACTTGGAAAATCCTCGTATTACACCTCTTTTAAAAATAATAATAATAATAATAATAATAATAACAATTTCACTCTATATTCAAAAGTTTAGAGGTGCAGTCACAATGCAACGACTACATTGAATGCATGTTTTTGAATTCGATCATATATTTTATTGTAAATTTTAGTTTTTTTGGAAAAAAATTTAAAATTTTTTTATTTTTTATAATATGTGAGATGGAGAATTAAATATTAAACTTTAGAGTTGATAGTATAAATTCATATCGATTGAGTTAGAAATAGAAGAGAATATGAAATTTTTTAGTCGTAAATGTTTCTTTAGTATTGTTTTAAGGGAAGTGGTGATTAAATGTGTATGAGTGAATTTTAAATGAGTTTTGAGAGAAGTGAGACTTTTTTTAATATGAAATACTTTAATTAGTGATGTTGATTCCTAGGCATAATGATTCTTCATTCTTTTATCTATTTTGTATAACTTTATTTTTTACTAGTGGATCAAAGTTGACTTAACCTATAGGATACACCTATCCTTAATAGAAGGAAATGACATTTTAGGTAATAAAGGAGTTTGTTGAGGACTGGCAGCTTAAAAGTGTGTTTTTAATCTTTTGGACTCCTCCAAGTTCATCTTAAATGAAATTTTAAAAGTGTTTGGGACCAACACTGGAGTTGAGAAATGAAATTTGCAGTGTAAAAGATTGATATAGAGTATAAAATTGATACTTTTTTAGTTGTGAAATCTCAAATTTGTCTGTCTTTGAACCAAACAAGAGGTGGAGCTATAACTCCAATTCTTTCCGTCAAACACCTTATTAAATACTCTAAAATTTAGAGAGATTTCAATAATGAATTTGATGTGACTTTTTAAAATCGTGAAACTTGTCTTTAATTAGTTAAAAATATTTTGATGGTTTATAAAATGATATATAGTTAACACGGTCATAAATATATCAAAAATATTTTACTTTTAAATACTATTTGTAAAAGTCGTGGTCTCGTCAATTTGAGTTTAGCTTAATCGGTTAAGATTAGAGGTATTTTTGTTTTTCACTCCACATCTTCGAAATATTCATTCTACTGTATATGAAAAAATGCATTTTTTTTCTAATAGTTTAAAGTTTTTTGAAGTGTTTTGTTTTTAAATATTCAACATCCCTTTCAATTTCATCATTTTTTTTTTTTTTTTAAGATTTATGAACCTCTAGATGGAAAAGTAAAATAAAATTGATGAATTCCAATTATCTCTCCCACATAATGTGGGGAAGAGATTATGGACCCTATTATATATCTTTTTCACCCTATCTCACTATCATTTTAGGTGAGACAAAATGGACTCTTATGTGTTTCTACACTAACATTTGTTTTGTTTTGTTTATCTTTTTAGGATAATTCTTTCATTAGAGAGTGCTGATTAGGGGTGAGAGAGAGATTGTATAGAATGGAAAAACATGTAAAAAAATGACAAAGCATGACTTCAATATTTGGAAGGAAATTTTCCCTTTTAAAAATCCACTTGTTTGGGAGTTTTAGGAATATTTAGAGAGGGGAAAGGAGATTATAAATTCTAGTTATTCTTTAGCTCTCTTTCTATTCAACCACATATAGATCAACATTAGAATATAGAACTTTTTAGAATTTTTTTTCGCCTTGAGCAATTGAGTTATATTTTATTAACTTAAAATATAAAATATTTTTTGGTCTGGAACATGATGAGAGTGTTAGAGATATGTCAACCTATTGATAAAATATCTTGATACATTTTCTTGTATATTGTTAAAAAAGAGTTATATTTTATTTTACTTCCAAAACTTTGTTAGTTGTTTTCTTTTGTCCTTGAATGTTACTTCAACTGAGCTTTTGCTTTATATATAGTCCCTTAAATTTTCATAAATTACAACCTCAGTACTTAAAGAGCATAAAAATTTTGTGCTTTCGGCTTCTCTCTAGCCCTTGTCTGCTTTCTAAACTCTTTTTGTATGATCGTTGGTCTTTATTGAATACATTTGTTGGTGGAATATGATGAGGGTTCTAAAAATGTGTCAAAACTTAATTAAAGTATTGAGTGTACTTACTGACCCAAATTGTATCTTCTTCTAAAAAAAGAAAAAACATAAAAGTTTGTGAATATATAATAAGAATTTTTCAAAGTTTTTGCTAGTGATATAAATTAAATTTGGCTTCACCCATCCGCTTAAGTTTTTGAGTCAATCAGCGATTTAATAGTTTCGAGGTCCAATTAAGATGTCTAAATTCTAGGAATAGAAACTATATTTAAACCTAAAAAATATAAATTTTCATGTAGTAAATGTTTCAAACTCTATACTCGTGGTCTCTATTCACTTCTTTTTATTTGAATGTATATAGAGTTTTGTTTAATAAAGGATGAAAAATATATAATTTTTTTTTCTTTTTTTTTGGATGCATATGGCAGATAGAGATAAGATGTAGAGGGCAAGAGTTGCTTCCATTTTGGACATTGCAACATGTAAGAGATACAATTTGGAGTACTTCTTCATCACACTCACTCTTCACTTTGCTTCCTCACTCCTCAACCACAAATCACTTAATGCTTCTTCACTATGGAAGGAAGAATTAA

mRNA sequence

ATGTATGTTGACCTTAATAAAATAAGGATTTATGAACCTCTAGATGGAAAAATAGAGATAAGATGTAGAGGGCAAGAGTTGCTTCCATTTTGGACATTGCAACATGTAAGAGATACAATTTGGAGTACTTCTTCATCACACTCACTCTTCACTTTGCTTCCTCACTCCTCAACCACAAATCACTTAATGCTTCTTCACTATGGAAGGAAGAATTAA

Coding sequence (CDS)

ATGTATGTTGACCTTAATAAAATAAGGATTTATGAACCTCTAGATGGAAAAATAGAGATAAGATGTAGAGGGCAAGAGTTGCTTCCATTTTGGACATTGCAACATGTAAGAGATACAATTTGGAGTACTTCTTCATCACACTCACTCTTCACTTTGCTTCCTCACTCCTCAACCACAAATCACTTAATGCTTCTTCACTATGGAAGGAAGAATTAA

Protein sequence

MYVDLNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIWSTSSSHSLFTLLPHSSTTNHLMLLHYGRKN
Homology
[Close]
BLAST of ClCG07G011820 vs. TrEMBL
Match: A0A078FCK3_BRANA (BnaC09g43830D protein OS=Brassica napus GN=BnaC09g43830D PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.2e-13
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIW-----STSSSHSLFTLLPHSSTT 64
           +NK+R+ E    ++EIRCRGQEL P  TLQHVRDTIW     ++S S +L TLLP+SST+
Sbjct: 317 VNKLRL-EHETQQVEIRCRGQELEPVLTLQHVRDTIWRGSRDNSSVSQNLITLLPNSSTS 376

Query: 65  NHLMLLHYGR 70
           +HLM+LHYGR
Sbjct: 377 DHLMVLHYGR 385

[Close]
BLAST of ClCG07G011820 vs. TrEMBL
Match: A0A078BY11_BRANA (BnaA10g20040D protein OS=Brassica napus GN=BnaA10g20040D PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIW-----STSSSHSLFTLLPHSSTT 64
           ++K+R+    + ++EIRCRGQEL P  TLQHVRDTIW     ++S S +L TLLP+SST+
Sbjct: 312 VSKLRLEH--ESQVEIRCRGQELEPVLTLQHVRDTIWRGSRDNSSVSQNLITLLPNSSTS 371

Query: 65  NHLMLLHYGR 70
           +HLM+LHYGR
Sbjct: 372 DHLMVLHYGR 379

[Close]
BLAST of ClCG07G011820 vs. TrEMBL
Match: M4CX96_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIW-----STSSSHSLFTLLPHSSTT 64
           ++K+R+    + ++EIRCRGQEL P  TLQHVRDTIW     ++S S +L TLLP+SST+
Sbjct: 312 VSKLRLEH--ESQVEIRCRGQELEPVLTLQHVRDTIWRGSRDNSSVSQNLITLLPNSSTS 371

Query: 65  NHLMLLHYGR 70
           +HLM+LHYGR
Sbjct: 372 DHLMVLHYGR 379

[Close]
BLAST of ClCG07G011820 vs. TrEMBL
Match: A0A0D3EFU1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-12
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIW-----STSSSHSLFTLLPHSSTT 64
           +NK+R+    + ++EIRCRG+EL P  TLQHVRDTIW     ++S S +L TLLP+SST+
Sbjct: 315 VNKLRLDH--ETQVEIRCRGKELEPVLTLQHVRDTIWRGSRDNSSVSQNLITLLPNSSTS 374

Query: 65  NHLMLLHYGR 70
           +HLM+LHYGR
Sbjct: 375 DHLMVLHYGR 382

[Close]
BLAST of ClCG07G011820 vs. TrEMBL
Match: R0IHG3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012026mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.8e-12
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 1  MYVDLNKIRIYEPLDG-KIEIRCRGQELLPFWTLQHVRDTIW------STSSSHSLFTLL 60
          M +D+     ++  DG ++E+RCRGQ+L P  T+QHVRDTIW      S+SSS   FTLL
Sbjct: 1  MDIDVTLNSNFDLFDGEQVEVRCRGQQLSPLLTMQHVRDTIWIPKSSSSSSSSSPSFTLL 60

Query: 61 PHSSTTNHLMLLHYGR 70
            SSTT+H+M+LHYGR
Sbjct: 61 RDSSTTDHIMILHYGR 76

[Close]
BLAST of ClCG07G011820 vs. TAIR10
Match: AT5G13250.1 (AT5G13250.1 RING finger protein)

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-15
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIW----STSSSHSLFTLLPHSSTTN 64
           +NK+R+ E    ++EIRCRGQEL P  TLQHVRD IW     TSS     TLLP+SST++
Sbjct: 317 VNKLRL-EHESQQVEIRCRGQELEPVLTLQHVRDAIWRGSRDTSSLSQNITLLPNSSTSD 376

Query: 65  HLMLLHYGR 70
           HLM+LHYGR
Sbjct: 377 HLMVLHYGR 384

[Close]
BLAST of ClCG07G011820 vs. NCBI nr
Match: gi|659108299|ref|XP_008454124.1| (PREDICTED: probable E3 ubiquitin protein ligase DRIPH isoform X2 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 15  DGKIEIRCRGQELLPFWTLQHVRDTIWSTSSSHSLFTLLPHSSTTNHLMLLHYGRKN 72
           + +IEIRCRGQEL+PFWT+Q+VRD IW+ +SS+SLFTLLP SSTTNHLMLLHYGRKN
Sbjct: 250 ESEIEIRCRGQELVPFWTMQYVRDRIWNNTSSNSLFTLLPQSSTTNHLMLLHYGRKN 306

[Close]
BLAST of ClCG07G011820 vs. NCBI nr
Match: gi|659108297|ref|XP_008454123.1| (PREDICTED: uncharacterized protein LOC103494623 isoform X1 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 15  DGKIEIRCRGQELLPFWTLQHVRDTIWSTSSSHSLFTLLPHSSTTNHLMLLHYGRKN 72
           + +IEIRCRGQEL+PFWT+Q+VRD IW+ +SS+SLFTLLP SSTTNHLMLLHYGRKN
Sbjct: 303 ESEIEIRCRGQELVPFWTMQYVRDRIWNNTSSNSLFTLLPQSSTTNHLMLLHYGRKN 359

[Close]
BLAST of ClCG07G011820 vs. NCBI nr
Match: gi|778689783|ref|XP_004152316.2| (PREDICTED: uncharacterized protein LOC101223230 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 7.2e-19
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 15  DGKIEIRCRGQELLPFWTLQHVRDTIWSTSSSHSLFTLLPHSSTTNHLMLLHYGRKN 72
           + +IEIRCRGQEL+PFWT+Q VRD IW+ +SS+SLFTLLP SSTTNHLMLLHYGRKN
Sbjct: 298 ESEIEIRCRGQELVPFWTMQDVRDRIWNNTSSNSLFTLLPQSSTTNHLMLLHYGRKN 354

[Close]
BLAST of ClCG07G011820 vs. NCBI nr
Match: gi|747079344|ref|XP_011086867.1| (PREDICTED: uncharacterized protein LOC105168470 [Sesamum indicum])

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIWSTSSSHSLFTLLPHSSTTNHLML 64
           +NK+R+    + +IEIRC+GQ LLPF TLQHVRD IWS ++     TLLP+SSTT+H+M+
Sbjct: 194 VNKLRLEN--ESEIEIRCKGQRLLPFLTLQHVRDNIWS-NNPRDFITLLPNSSTTHHIMV 253

Query: 65  LHYGRKN 72
           LHYGR N
Sbjct: 254 LHYGRIN 257

[Close]
BLAST of ClCG07G011820 vs. NCBI nr
Match: gi|923730680|ref|XP_013667945.1| (PREDICTED: putative uncharacterized protein DDB_G0289963 isoform X4 [Brassica napus])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 5   LNKIRIYEPLDGKIEIRCRGQELLPFWTLQHVRDTIW-----STSSSHSLFTLLPHSSTT 64
           +NK+R+    + ++EIRCRGQEL P  TLQHVRDTIW     ++S S +L TLLP+SST+
Sbjct: 316 VNKLRLEH--ETQVEIRCRGQELEPVLTLQHVRDTIWRGSRDNSSVSQNLITLLPNSSTS 375

Query: 65  NHLMLLHYGR 70
           +HLM+LHYGR
Sbjct: 376 DHLMVLHYGR 383

The following BLAST results are available for this feature:
BLAST of ClCG07G011820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078FCK3_BRANA9.2e-1360.00BnaC09g43830D protein OS=Brassica napus GN=BnaC09g43830D PE=4 SV=1[more]
A0A078BY11_BRANA2.0e-1257.14BnaA10g20040D protein OS=Brassica napus GN=BnaA10g20040D PE=4 SV=1[more]
M4CX96_BRARP2.0e-1257.14Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0D3EFU1_BRAOL3.5e-1257.14Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
R0IHG3_9BRAS7.8e-1252.63Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012026mg PE=4 SV=1[more]
BLAST of ClCG07G011820 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13250.15.1e-1559.42 RING finger protein[more]
BLAST of ClCG07G011820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108299|ref|XP_008454124.1|3.2e-1978.95PREDICTED: probable E3 ubiquitin protein ligase DRIPH isoform X2 [Cucumis melo][more]
gi|659108297|ref|XP_008454123.1|3.2e-1978.95PREDICTED: uncharacterized protein LOC103494623 isoform X1 [Cucumis melo][more]
gi|778689783|ref|XP_004152316.2|7.2e-1978.95PREDICTED: uncharacterized protein LOC101223230 [Cucumis sativus][more]
gi|747079344|ref|XP_011086867.1|3.5e-1359.70PREDICTED: uncharacterized protein LOC105168470 [Sesamum indicum][more]
gi|923730680|ref|XP_013667945.1|1.3e-1258.57PREDICTED: putative uncharacterized protein DDB_G0289963 isoform X4 [Brassica na... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G011820.1ClCG07G011820.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10825RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENTcoord: 2..69
score: 1.1
NoneNo IPR availablePANTHERPTHR10825:SF23RING FINGER PROTEINcoord: 2..69
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G011820Carg06558Silver-seed gourdcarwcgB0121
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G011820Cucurbita moschata (Rifu)cmowcgB748
ClCG07G011820Wild cucumber (PI 183967)cpiwcgB343
ClCG07G011820Cucumber (Chinese Long) v2cuwcgB326
ClCG07G011820Melon (DHL92) v3.5.1mewcgB486
ClCG07G011820Watermelon (97103) v1wcgwmB371
ClCG07G011820Cucurbita pepo (Zucchini)cpewcgB571
ClCG07G011820Cucurbita pepo (Zucchini)cpewcgB794
ClCG07G011820Bottle gourd (USVL1VR-Ls)lsiwcgB406
ClCG07G011820Cucumber (Gy14) v2cgybwcgB304
ClCG07G011820Melon (DHL92) v3.6.1medwcgB480
ClCG07G011820Silver-seed gourdcarwcgB0672
ClCG07G011820Cucumber (Chinese Long) v3cucwcgB345
ClCG07G011820Watermelon (97103) v2wcgwmbB307
ClCG07G011820Wax gourdwcgwgoB566
ClCG07G011820Cucumber (Gy14) v1cgywcgB117
ClCG07G011820Cucurbita maxima (Rimu)cmawcgB242
ClCG07G011820Cucurbita maxima (Rimu)cmawcgB746
ClCG07G011820Cucurbita moschata (Rifu)cmowcgB230