ClCG07G009810 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G009810
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	GTP-binding protein
Location	CG_Chr07 : 25431982 .. 25432712 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGTGGTCGATTGCACCGCCCCCAACCTCAATGAGCACCGATCGACTGTTTTTCAAGTACTTCAGCAAATAGGAGTTTCTAAAACGAAGCTTCAAGATATGATTGAGGTTTGGAATAAGGTAATTCTATTTATCTCATTTCTTCTCCACAAGAAGGGAAAGATTGCAATTTGCTCTGTAATGCATGATGCGTGAAATAATTTGGACAGATTGATTATCATGAAGAAGGCAAGAGTATAGATGAGTCTTGTGATGATGCTAATAAATATAATGGCGAGGCTGGAGATTCGTCAGGAGAAGATAGTATAATAGATGCTGGAACTAACAATTTTATTGAAATGGAAAAGGGTGATATTACGAAAAAGCAAGCAACTGAAGAAGTCATTTCTCAAGAAAATCTTGGAAACAGGATGAAGGGACAAGAGAGCGATTGTTGTGAAGACTGGTTGGCAGATGATGATGATCAAAACCCTTGGGTGGATGAAAAGGGTTATTATGAAGGCCAGGGGATGAGGATGGGGATGGGAGAAGATGTACAGCCTTCAGGTGATCAATCTGGTCCACATCTCAAAATATCAGCTACGTTTGGAGTTGGTCTGCAAGAGTTGCTACAACTCATAGATAACAAACTGAAGGTTCAGGATGAGAAGCTGAAAGCTCAAAATGTTTTAGAGAATAATGTTTTTGAACGTAAATGGAGGCCATCTCAGATAGAGGCAGATTCAATTTGA

mRNA sequence

CATGTGGTCGATTGCACCGCCCCCAACCTCAATGAGCACCGATCGACTGTTTTTCAAGTACTTCAGCAAATAGGAGTTTCTAAAACGAAGCTTCAAGATATGATTGAGGTTTGGAATAAGATTGATTATCATGAAGAAGGCAAGAGTATAGATGAGTCTTGTGATGATGCTAATAAATATAATGGCGAGGCTGGAGATTCGTCAGGAGAAGATAGTATAATAGATGCTGGAACTAACAATTTTATTGAAATGGAAAAGGGTGATATTACGAAAAAGCAAGCAACTGAAGAAGTCATTTCTCAAGAAAATCTTGGAAACAGGATGAAGGGACAAGAGAGCGATTGTTGTGAAGACTGGTTGGCAGATGATGATGATCAAAACCCTTGGGTGGATGAAAAGGGTTATTATGAAGGCCAGGGGATGAGGATGGGGATGGGAGAAGATGTACAGCCTTCAGGTGATCAATCTGGTCCACATCTCAAAATATCAGCTACGTTTGGAGTTGGTCTGCAAGAGTTGCTACAACTCATAGATAACAAACTGAAGGTTCAGGATGAGAAGCTGAAAGCTCAAAATGTTTTAGAGAATAATGTTTTTGAACGTAAATGGAGGCCATCTCAGATAGAGGCAGATTCAATTTGA

Coding sequence (CDS)

CATGTGGTCGATTGCACCGCCCCCAACCTCAATGAGCACCGATCGACTGTTTTTCAAGTACTTCAGCAAATAGGAGTTTCTAAAACGAAGCTTCAAGATATGATTGAGGTTTGGAATAAGATTGATTATCATGAAGAAGGCAAGAGTATAGATGAGTCTTGTGATGATGCTAATAAATATAATGGCGAGGCTGGAGATTCGTCAGGAGAAGATAGTATAATAGATGCTGGAACTAACAATTTTATTGAAATGGAAAAGGGTGATATTACGAAAAAGCAAGCAACTGAAGAAGTCATTTCTCAAGAAAATCTTGGAAACAGGATGAAGGGACAAGAGAGCGATTGTTGTGAAGACTGGTTGGCAGATGATGATGATCAAAACCCTTGGGTGGATGAAAAGGGTTATTATGAAGGCCAGGGGATGAGGATGGGGATGGGAGAAGATGTACAGCCTTCAGGTGATCAATCTGGTCCACATCTCAAAATATCAGCTACGTTTGGAGTTGGTCTGCAAGAGTTGCTACAACTCATAGATAACAAACTGAAGGTTCAGGATGAGAAGCTGAAAGCTCAAAATGTTTTAGAGAATAATGTTTTTGAACGTAAATGGAGGCCATCTCAGATAGAGGCAGATTCAATTTGA

Protein sequence

HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKYNGEAGDSSGEDSIIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCCEDWLADDDDQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQLIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEADSI

Homology

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BLAST of ClCG07G009810 vs. Swiss-Prot
Match: Y3725_ARATH (GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana GN=At3g49725 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 5.3e-25
Identity = 73/209 (34.93%), Postives = 116/209 (55.50%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVD TAPN+ EHRSTV  VL QIGV + KLQ+MIEVWNKIDY E+    ++  DD    
Sbjct: 430 HVVDSTAPNIEEHRSTVLHVLNQIGVPEEKLQNMIEVWNKIDYEEDEVEEEKYLDD---- 489

Query: 61  NGEAGDSSGEDSIIDAGTNNFIEMEKGDITKKQ---ATEEVISQENLGNRMKGQESDCCE 120
               G+  GE+           + ++ D+  ++   A+E  + ++ + N     + D  +
Sbjct: 490 ----GEGVGEE-----------DEDEADLKAEETVDASEATVDEDQIQN----GDGDDAD 549

Query: 121 DWLADDDDQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQLI 180
            WL  +D+     D+  +++   +          + ++ GP +++SA  GVGL+ELL LI
Sbjct: 550 GWLLSEDEN---ADDPEFWKVPEVAK------VDAANKKGPDVRVSALTGVGLKELLYLI 604

Query: 181 DNKLKVQDEKLKAQNVLE-NNVFERKWRP 206
           D+K+K  ++KLK+  ++E + + +RKWRP
Sbjct: 610 DDKMK--EKKLKSPTIVERSELHKRKWRP 604

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BLAST of ClCG07G009810 vs. TrEMBL
Match: A0A0A0KZ07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G090310 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.1e-80
Identity = 160/216 (74.07%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVDCTAPNL+EHRSTV QVLQQIGVSK KLQDM+EVWNKIDYH+EG+SID+SCDD N  
Sbjct: 3   HVVDCTAPNLDEHRSTVLQVLQQIGVSKMKLQDMVEVWNKIDYHQEGESIDDSCDDDN-- 62

Query: 61  NGEAGDSSGEDS----IIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCC 120
            GEA +SSGEDS    +  AGTNN +EMEKGDIT KQATEE     +LGNRM+GQESDCC
Sbjct: 63  -GEAANSSGEDSNEGKLSSAGTNNIVEMEKGDITIKQATEE-----HLGNRMEGQESDCC 122

Query: 121 EDWLADDD-DQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQ 180
           +DWL DDD DQNPW D+     GQGM    GEDVQ S DQSGPH++ISA  GVGL ELLQ
Sbjct: 123 DDWLQDDDEDQNPWADK-----GQGM----GEDVQASLDQSGPHVRISARLGVGLGELLQ 182

Query: 181 LIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEAD 212
           LIDNKLKVQDEKL+AQNVLE NVF+RKWRPSQ+E+D
Sbjct: 183 LIDNKLKVQDEKLQAQNVLERNVFDRKWRPSQMESD 201

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BLAST of ClCG07G009810 vs. TrEMBL
Match: A0A067KIM9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12581 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-41
Identity = 102/217 (47.00%), Postives = 134/217 (61.75%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HV+DCTAPNL+EHR+TV QVLQQIGVS+ KLQ MIEVWNKIDY EE    DES D ++  
Sbjct: 386 HVIDCTAPNLDEHRTTVLQVLQQIGVSEEKLQSMIEVWNKIDYEEEEMGADESLDASSWS 445

Query: 61  NGE---AGDSSGEDSIIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCCE 120
             E   A + S E     A  ++ ++  +GDI      EE+I ++         + D  +
Sbjct: 446 TDEDDNASEISSEAKDDKANISSGVKDGEGDI------EEIIDED---------QGDYSD 505

Query: 121 DWLADDDDQ----NPWVDEKGYYEGQGMR-MGMGEDVQPSGDQSGPHLKISATFGVGLQE 180
            WL  ++DQ    + W+      +G+ +   G+ +D+QP   Q GPHLKISA  GVGLQE
Sbjct: 506 GWLLSENDQEMVNDQWLKSLDDQQGETLNDSGIEKDLQPQA-QHGPHLKISAITGVGLQE 565

Query: 181 LLQLIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIE 210
           LL+LID +LK QDE LK QNV+E   F+RKWRPS  +
Sbjct: 566 LLELIDERLKTQDETLKTQNVVERGFFDRKWRPSHTD 586

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BLAST of ClCG07G009810 vs. TrEMBL
Match: W9STQ8_9ROSA (GTP-binding protein OS=Morus notabilis GN=L484_000668 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.0e-38
Identity = 99/220 (45.00%), Postives = 132/220 (60.00%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HV+DCTAPNL EHRSTV  VL+QIGVSK K+ DMIEVWNKID  E G   DE  DDA   
Sbjct: 361 HVLDCTAPNLEEHRSTVLSVLEQIGVSKEKVDDMIEVWNKIDNQEGGMDGDEYPDDAE-- 420

Query: 61  NGEAGDSSGEDSIIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCCEDWL 120
           +G+A + SGE+   D  +   +           A E  +S +N+   M   + D  +  L
Sbjct: 421 DGQASEFSGEEE-DDMASEQSLSAGNNQADSSDAYE--LSTDNV-EAMDDAKDDYTDGCL 480

Query: 121 ADDDDQNPWVDEKGYYEGQGMRMGMGEDVQPSG-------DQSGPHLKISATFGVGLQEL 180
           + +DDQNP  DE G +  Q  +    + +Q S        DQSGPH+K SA  GVGLQEL
Sbjct: 481 SSEDDQNPLSDEDGSFVPQ--KTTDAQQIQCSNESRHSQVDQSGPHVKTSALTGVGLQEL 540

Query: 181 LQLIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEADSI 214
           LQ+ID +L+ QD+K+KA+ V+E + F +KWRP + E  ++
Sbjct: 541 LQIIDERLRDQDDKVKAKYVVERSAFGQKWRPPREEETAV 572

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BLAST of ClCG07G009810 vs. TrEMBL
Match: W9RVB3_9ROSA (GTP-binding protein OS=Morus notabilis GN=L484_012980 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.5e-38
Identity = 99/220 (45.00%), Postives = 132/220 (60.00%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HV+DCTAPNL EHRSTV  VL+QIGVSK K+ DMIEVWNKID  E G   DE  DDA   
Sbjct: 361 HVLDCTAPNLEEHRSTVLSVLEQIGVSKEKVDDMIEVWNKIDNQEGGMDGDEYPDDAE-- 420

Query: 61  NGEAGDSSGEDSIIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCCEDWL 120
           +G+A + SGE+   D  +   +           A E  +S +N+   M   + D  +  L
Sbjct: 421 DGQASEFSGEEE-DDMASEQSLSAGNNQADSSDAYE--LSTDNV-EAMDDAKDDYTDGCL 480

Query: 121 ADDDDQNPWVDEKGYYEGQGMRMGMGEDVQPSG-------DQSGPHLKISATFGVGLQEL 180
           A +DD+NP  DE G +  Q  +    + +Q S        DQSGPH+K SA  GVGLQEL
Sbjct: 481 ASEDDRNPLSDEDGSFVPQ--KTTDAQQIQCSNESRHSQVDQSGPHVKTSALTGVGLQEL 540

Query: 181 LQLIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEADSI 214
           LQ+ID +L+ QD+K+KA+ V+E + F +KWRP + E  ++
Sbjct: 541 LQIIDERLRDQDDKVKAKYVVERSAFGQKWRPPREEETAV 572

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BLAST of ClCG07G009810 vs. TrEMBL
Match: B9SX85_RICCO (GTP-binding protein hflx, putative OS=Ricinus communis GN=RCOM_0859540 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.5e-38
Identity = 98/215 (45.58%), Postives = 128/215 (59.53%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCD--DAN 60
           HV+D TAPNL EH +TV QVLQQIGVSK KLQ MIEVWNKIDY EE   +D S D  D +
Sbjct: 384 HVIDSTAPNLEEHHTTVLQVLQQIGVSKEKLQSMIEVWNKIDYEEEEMDVDHSADDVDGS 443

Query: 61  KYNGEAGD---SSGEDSIIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDC 120
            ++G+  D   S     I D   NN +E + G+   ++  + V  + + G  + G E + 
Sbjct: 444 SWSGDEDDDIASEISSRIEDNKGNNCLEAQNGEGDIEETLDSVEGEYSDGWLLSGDEREL 503

Query: 121 CED-WLADDDDQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELL 180
             D WL   DDQ     +           G+G+D+  S  + GPH+K SA  GVGLQELL
Sbjct: 504 VGDNWLKTLDDQQCKASD---------NPGVGKDIL-SQAEHGPHVKTSAITGVGLQELL 563

Query: 181 QLIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIE 210
            L+D +LK QDE LKAQNV+  ++F RKWRPS+ +
Sbjct: 564 VLVDERLKTQDEMLKAQNVVGRDLFYRKWRPSRAD 588

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BLAST of ClCG07G009810 vs. TAIR10
Match: AT3G49725.1 (AT3G49725.1 GTP-binding protein, HflX)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-26
Identity = 73/209 (34.93%), Postives = 116/209 (55.50%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVD TAPN+ EHRSTV  VL QIGV + KLQ+MIEVWNKIDY E+    ++  DD    
Sbjct: 430 HVVDSTAPNIEEHRSTVLHVLNQIGVPEEKLQNMIEVWNKIDYEEDEVEEEKYLDD---- 489

Query: 61  NGEAGDSSGEDSIIDAGTNNFIEMEKGDITKKQ---ATEEVISQENLGNRMKGQESDCCE 120
               G+  GE+           + ++ D+  ++   A+E  + ++ + N     + D  +
Sbjct: 490 ----GEGVGEE-----------DEDEADLKAEETVDASEATVDEDQIQN----GDGDDAD 549

Query: 121 DWLADDDDQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQLI 180
            WL  +D+     D+  +++   +          + ++ GP +++SA  GVGL+ELL LI
Sbjct: 550 GWLLSEDEN---ADDPEFWKVPEVAK------VDAANKKGPDVRVSALTGVGLKELLYLI 604

Query: 181 DNKLKVQDEKLKAQNVLE-NNVFERKWRP 206
           D+K+K  ++KLK+  ++E + + +RKWRP
Sbjct: 610 DDKMK--EKKLKSPTIVERSELHKRKWRP 604

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BLAST of ClCG07G009810 vs. NCBI nr
Match: gi|659125883|ref|XP_008462905.1| (PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 4.0e-81
Identity = 165/216 (76.39%), Postives = 177/216 (81.94%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVDCTAPNL+EHRSTVFQVLQQIGVSK KLQDMIEVWNKIDYHEEGKSIDESCDD    
Sbjct: 396 HVVDCTAPNLDEHRSTVFQVLQQIGVSKMKLQDMIEVWNKIDYHEEGKSIDESCDDD--- 455

Query: 61  NGEAGDSSGEDSI----IDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCC 120
           NGEA +SSGEDSI      AGTNN IEMEKGDIT KQATEE +     GNRM+GQESDCC
Sbjct: 456 NGEAANSSGEDSIEGKLSSAGTNNIIEMEKGDITIKQATEEDLGN---GNRMEGQESDCC 515

Query: 121 EDWLADDD-DQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQ 180
           +DWL DDD D+NPW D KG         G+GEDVQ S DQSGPH++ISA  GVGL ELLQ
Sbjct: 516 DDWLEDDDEDKNPWAD-KG--------KGIGEDVQASLDQSGPHVRISARLGVGLGELLQ 575

Query: 181 LIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEAD 212
           LIDNKLKVQDEKL+AQNVLE NVF+RKWRPSQ+EAD
Sbjct: 576 LIDNKLKVQDEKLQAQNVLERNVFDRKWRPSQMEAD 596

[Close]

BLAST of ClCG07G009810 vs. NCBI nr
Match: gi|659125885|ref|XP_008462906.1| (PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 4.0e-81
Identity = 165/216 (76.39%), Postives = 177/216 (81.94%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVDCTAPNL+EHRSTVFQVLQQIGVSK KLQDMIEVWNKIDYHEEGKSIDESCDD    
Sbjct: 377 HVVDCTAPNLDEHRSTVFQVLQQIGVSKMKLQDMIEVWNKIDYHEEGKSIDESCDDD--- 436

Query: 61  NGEAGDSSGEDSI----IDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCC 120
           NGEA +SSGEDSI      AGTNN IEMEKGDIT KQATEE +     GNRM+GQESDCC
Sbjct: 437 NGEAANSSGEDSIEGKLSSAGTNNIIEMEKGDITIKQATEEDLGN---GNRMEGQESDCC 496

Query: 121 EDWLADDD-DQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQ 180
           +DWL DDD D+NPW D KG         G+GEDVQ S DQSGPH++ISA  GVGL ELLQ
Sbjct: 497 DDWLEDDDEDKNPWAD-KG--------KGIGEDVQASLDQSGPHVRISARLGVGLGELLQ 556

Query: 181 LIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEAD 212
           LIDNKLKVQDEKL+AQNVLE NVF+RKWRPSQ+EAD
Sbjct: 557 LIDNKLKVQDEKLQAQNVLERNVFDRKWRPSQMEAD 577

[Close]

BLAST of ClCG07G009810 vs. NCBI nr
Match: gi|449438863|ref|XP_004137207.1| (PREDICTED: GTP-binding protein At3g49725, chloroplastic [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 4.4e-80
Identity = 160/216 (74.07%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVDCTAPNL+EHRSTV QVLQQIGVSK KLQDM+EVWNKIDYH+EG+SID+SCDD N  
Sbjct: 395 HVVDCTAPNLDEHRSTVLQVLQQIGVSKMKLQDMVEVWNKIDYHQEGESIDDSCDDDN-- 454

Query: 61  NGEAGDSSGEDS----IIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCC 120
            GEA +SSGEDS    +  AGTNN +EMEKGDIT KQATEE     +LGNRM+GQESDCC
Sbjct: 455 -GEAANSSGEDSNEGKLSSAGTNNIVEMEKGDITIKQATEE-----HLGNRMEGQESDCC 514

Query: 121 EDWLADDD-DQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQ 180
           +DWL DDD DQNPW D+     GQGM    GEDVQ S DQSGPH++ISA  GVGL ELLQ
Sbjct: 515 DDWLQDDDEDQNPWADK-----GQGM----GEDVQASLDQSGPHVRISARLGVGLGELLQ 574

Query: 181 LIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEAD 212
           LIDNKLKVQDEKL+AQNVLE NVF+RKWRPSQ+E+D
Sbjct: 575 LIDNKLKVQDEKLQAQNVLERNVFDRKWRPSQMESD 593

[Close]

BLAST of ClCG07G009810 vs. NCBI nr
Match: gi|700198454|gb|KGN53612.1| (hypothetical protein Csa_4G090310 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 4.4e-80
Identity = 160/216 (74.07%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYHEEGKSIDESCDDANKY 60
           HVVDCTAPNL+EHRSTV QVLQQIGVSK KLQDM+EVWNKIDYH+EG+SID+SCDD N  
Sbjct: 3   HVVDCTAPNLDEHRSTVLQVLQQIGVSKMKLQDMVEVWNKIDYHQEGESIDDSCDDDN-- 62

Query: 61  NGEAGDSSGEDS----IIDAGTNNFIEMEKGDITKKQATEEVISQENLGNRMKGQESDCC 120
            GEA +SSGEDS    +  AGTNN +EMEKGDIT KQATEE     +LGNRM+GQESDCC
Sbjct: 63  -GEAANSSGEDSNEGKLSSAGTNNIVEMEKGDITIKQATEE-----HLGNRMEGQESDCC 122

Query: 121 EDWLADDD-DQNPWVDEKGYYEGQGMRMGMGEDVQPSGDQSGPHLKISATFGVGLQELLQ 180
           +DWL DDD DQNPW D+     GQGM    GEDVQ S DQSGPH++ISA  GVGL ELLQ
Sbjct: 123 DDWLQDDDEDQNPWADK-----GQGM----GEDVQASLDQSGPHVRISARLGVGLGELLQ 182

Query: 181 LIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEAD 212
           LIDNKLKVQDEKL+AQNVLE NVF+RKWRPSQ+E+D
Sbjct: 183 LIDNKLKVQDEKLQAQNVLERNVFDRKWRPSQMESD 201

[Close]

BLAST of ClCG07G009810 vs. NCBI nr
Match: gi|1009145633|ref|XP_015890438.1| (PREDICTED: GTP-binding protein At3g49725, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 179.1 bits (453), Expect = 8.1e-42
Identity = 106/239 (44.35%), Postives = 141/239 (59.00%), Query Frame = 1


Query: 1   HVVDCTAPNLNEHRSTVFQVLQQIGVSKTKLQDMIEVWNKIDYH-EEGKSIDESCDDANK 60
           HV+DCTAPNL+EHRSTV  VLQQIGVS+ KLQ+MIEVWNKIDY  EE   +D   D+ + 
Sbjct: 398 HVLDCTAPNLDEHRSTVLHVLQQIGVSEKKLQNMIEVWNKIDYEAEEDMGVDGYLDNGS- 457

Query: 61  YNGEAGDSSGEDSIIDAG---------TNNFIEMEKGDITKKQATEEVISQENLGN--RM 120
            +GE  + SGE+  +             N+F   +          +E +S+ +LGN   M
Sbjct: 458 -DGETSNFSGEEDDMTTKLSPRTEKNEANSFSGADDNGACVNDCADECVSELSLGNLEAM 517

Query: 121 KGQESDCCEDWLADDDDQNPWVDEKGYY--------------EGQGMRMGMGEDVQPSGD 180
           + Q+ D  + WLA +D+ +PW DE G                + +  RM   E+V  S  
Sbjct: 518 EDQQGDVSDGWLASEDELDPWGDEIGSSMARRNMDEQQNECSQDKDWRM---ENVLQSEQ 577

Query: 181 QSGPHLKISATFGVGLQELLQLIDNKLKVQDEKLKAQNVLENNVFERKWRPSQIEADSI 214
            SGPH+K SA  GVGLQELL+LID +L+ QDEKLK+ NV+E N+F+RKWRP + E   I
Sbjct: 578 GSGPHVKTSAIMGVGLQELLELIDERLRDQDEKLKSANVVERNIFDRKWRPPRGEEAQI 631

The following BLAST results are available for this feature:

BLAST of ClCG07G009810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3725_ARATH	5.3e-25	34.93	GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana GN=At3g4972...	[more]

BLAST of ClCG07G009810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ07_CUCSA	3.1e-80	74.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G090310 PE=4 SV=1	[more]
A0A067KIM9_JATCU	4.8e-41	47.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12581 PE=4 SV=1	[more]
W9STQ8_9ROSA	5.0e-38	45.00	GTP-binding protein OS=Morus notabilis GN=L484_000668 PE=4 SV=1	[more]
W9RVB3_9ROSA	6.5e-38	45.00	GTP-binding protein OS=Morus notabilis GN=L484_012980 PE=4 SV=1	[more]
B9SX85_RICCO	6.5e-38	45.58	GTP-binding protein hflx, putative OS=Ricinus communis GN=RCOM_0859540 PE=4 SV=1	[more]

BLAST of ClCG07G009810 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49725.1	3.0e-26	34.93	GTP-binding protein, HflX	[more]

BLAST of ClCG07G009810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125883\|ref\|XP_008462905.1\|	4.0e-81	76.39	PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X1 [Cucumis melo...	[more]
gi\|659125885\|ref\|XP_008462906.1\|	4.0e-81	76.39	PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X2 [Cucumis melo...	[more]
gi\|449438863\|ref\|XP_004137207.1\|	4.4e-80	74.07	PREDICTED: GTP-binding protein At3g49725, chloroplastic [Cucumis sativus]	[more]
gi\|700198454\|gb\|KGN53612.1\|	4.4e-80	74.07	hypothetical protein Csa_4G090310 [Cucumis sativus]	[more]
gi\|1009145633\|ref\|XP_015890438.1\|	8.1e-42	44.35	PREDICTED: GTP-binding protein At3g49725, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016496	GTPase_HflX
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G009810.1	ClCG07G009810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016496	GTPase HflX	PANTHER	PTHR10229	GTP-BINDING PROTEIN HFLX	coord: 1..66 score: 1.7E-18coord: 147..181 score: 1.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 1..64 score: 1.6E-5coord: 153..193 score: 1.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 157..181 score: 5.4E-5coord: 1..61 score: 5.
None	No IPR available	PANTHER	PTHR10229:SF0	GTP-BINDING PROTEIN 6-RELATED	coord: 147..181 score: 1.7E-18coord: 1..66 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G009810	Csa4G090310	Cucumber (Chinese Long) v2	cuwcgB324
ClCG07G009810	Cla002413	Watermelon (97103) v1	wcgwmB364
ClCG07G009810	CSPI04G08300	Wild cucumber (PI 183967)	cpiwcgB341

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G009810	Silver-seed gourd	carwcgB0966
ClCG07G009810	Cucumber (Chinese Long) v3	cucwcgB343
ClCG07G009810	Watermelon (97103) v2	wcgwmbB307
ClCG07G009810	Wax gourd	wcgwgoB563
ClCG07G009810	Cucumber (Gy14) v1	cgywcgB475
ClCG07G009810	Cucurbita maxima (Rimu)	cmawcgB305
ClCG07G009810	Cucurbita moschata (Rifu)	cmowcgB298
ClCG07G009810	Cucurbita pepo (Zucchini)	cpewcgB214
ClCG07G009810	Bottle gourd (USVL1VR-Ls)	lsiwcgB414
ClCG07G009810	Cucumber (Gy14) v2	cgybwcgB302