ClCG07G008650 (gene) Watermelon (Charleston Gray)

NameClCG07G008650
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 22860697 .. 22861293 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGTACCTTCTGTGGAGTATCGTTGTGAGTGGATTTATGAGTATTCGGAGGAAGTTGGGATTGTATCGAAGGAACAATTTATCTCTAGTTTAGGCTTCCTAGTATATGACATCTCTGATCGTCAGTTAAGTATATTGCATGTTGATACAACGTGCAAAATGGGATTCCCAATGGTGGACTTTGGAGGGGTAACTGGGTCCTCTTCAGGATCTATGGTGGCTTTTATGCATTGTTTTTAGAAGTTATCTTTGACCCCAACAGGTGCTGAAGTGTTGGCTATTTATGAGGGTCTAAGATTGGCGGTTAGATTAGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAGATGCTCAGAGGCATAAGGAGAGTTTAGGTGGATTTAGCTAATTATGTGGCTGATATTATAAAGATTGCAGCTTCTTTCCAGTATGTGGTGTTCCACTATGTGACTCGTTCGTCAAATTCAGTGGCTGATGAGTTGACAAGGACGAGGGGTCAAGTGCTCTGTGGCGTGATTGCTTCCCCTCAAGGATTGTCTCTATGTACTCACATGATTTTTTTTTCTGACCAATTGTAG

mRNA sequence

ATGGAAGATGTACCTTCTGTGGAGTATCGTTGTGAGTGGATTTATGAGTATTCGGAGGAAGTTGGGATTGTATCGAAGGAACAATTTATCTCTAGTTTAGGCTTCCTAGTATATGACATCTCTGATCGTCAGTTAAGTATATTGCATGTTGATACAACGTGCAAAATGGGATTCCCAATGGTGGACTTTGGAGGGAAGTTATCTTTGACCCCAACAGGTGCTGAAGTGTTGGCTATTTATGAGGGTCTAAGATTGGCGGTTAGATTAGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAGATGCTCAGAGGCATAAGGAGAATTGCAGCTTCTTTCCAGTATGTGGTGTTCCACTATGTGACTCGTTCGTCAAATTCAGTGGCTGATGAGTTGACAAGGACGAGGGGTCAAGTGCTCTGTGGCGTGATTGCTTCCCCTCAAGGATTGTCTCTATGTACTCACATGATTTTTTTTTCTGACCAATTGTAG

Coding sequence (CDS)

ATGGAAGATGTACCTTCTGTGGAGTATCGTTGTGAGTGGATTTATGAGTATTCGGAGGAAGTTGGGATTGTATCGAAGGAACAATTTATCTCTAGTTTAGGCTTCCTAGTATATGACATCTCTGATCGTCAGTTAAGTATATTGCATGTTGATACAACGTGCAAAATGGGATTCCCAATGGTGGACTTTGGAGGGAAGTTATCTTTGACCCCAACAGGTGCTGAAGTGTTGGCTATTTATGAGGGTCTAAGATTGGCGGTTAGATTAGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAGATGCTCAGAGGCATAAGGAGAATTGCAGCTTCTTTCCAGTATGTGGTGTTCCACTATGTGACTCGTTCGTCAAATTCAGTGGCTGATGAGTTGACAAGGACGAGGGGTCAAGTGCTCTGTGGCGTGATTGCTTCCCCTCAAGGATTGTCTCTATGTACTCACATGATTTTTTTTTCTGACCAATTGTAG

Protein sequence

MEDVPSVEYRCEWIYEYSEEVGIVSKEQFISSLGFLVYDISDRQLSILHVDTTCKMGFPMVDFGGKLSLTPTGAEVLAIYEGLRLAVRLELSHMLVLFDSLVVIQMLRGIRRIAASFQYVVFHYVTRSSNSVADELTRTRGQVLCGVIASPQGLSLCTHMIFFSDQL
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G008650.1ClCG07G008650.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 65..136
score: 1.6
NoneNo IPR availablePFAMPF13456RVT_3coord: 69..137
score: 8.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G008650Silver-seed gourdcarwcgB0400
ClCG07G008650Silver-seed gourdcarwcgB0916
ClCG07G008650Silver-seed gourdcarwcgB0999
ClCG07G008650Cucumber (Chinese Long) v3cucwcgB167
ClCG07G008650Cucumber (Chinese Long) v3cucwcgB260
ClCG07G008650Cucumber (Chinese Long) v3cucwcgB344
ClCG07G008650Cucumber (Chinese Long) v3cucwcgB509
ClCG07G008650Watermelon (97103) v2wcgwmbB284
ClCG07G008650Watermelon (97103) v2wcgwmbB307
ClCG07G008650Wax gourdwcgwgoB560
ClCG07G008650Watermelon (Charleston Gray)wcgwcgB107
ClCG07G008650Watermelon (Charleston Gray)wcgwcgB165
ClCG07G008650Cucumber (Gy14) v1cgywcgB029
ClCG07G008650Cucumber (Gy14) v1cgywcgB151
ClCG07G008650Cucumber (Gy14) v1cgywcgB588
ClCG07G008650Cucurbita maxima (Rimu)cmawcgB301
ClCG07G008650Cucurbita maxima (Rimu)cmawcgB599
ClCG07G008650Cucurbita maxima (Rimu)cmawcgB668
ClCG07G008650Cucurbita maxima (Rimu)cmawcgB774
ClCG07G008650Cucurbita moschata (Rifu)cmowcgB294
ClCG07G008650Cucurbita moschata (Rifu)cmowcgB599
ClCG07G008650Cucurbita moschata (Rifu)cmowcgB670
ClCG07G008650Cucurbita moschata (Rifu)cmowcgB775
ClCG07G008650Wild cucumber (PI 183967)cpiwcgB261
ClCG07G008650Wild cucumber (PI 183967)cpiwcgB342
ClCG07G008650Wild cucumber (PI 183967)cpiwcgB515
ClCG07G008650Cucumber (Chinese Long) v2cuwcgB325
ClCG07G008650Cucumber (Chinese Long) v2cuwcgB489
ClCG07G008650Melon (DHL92) v3.5.1mewcgB125
ClCG07G008650Melon (DHL92) v3.5.1mewcgB484
ClCG07G008650Melon (DHL92) v3.5.1mewcgB543
ClCG07G008650Watermelon (97103) v1wcgwmB364
ClCG07G008650Watermelon (97103) v1wcgwmB383
ClCG07G008650Cucurbita pepo (Zucchini)cpewcgB210
ClCG07G008650Cucurbita pepo (Zucchini)cpewcgB412
ClCG07G008650Cucurbita pepo (Zucchini)cpewcgB445
ClCG07G008650Bottle gourd (USVL1VR-Ls)lsiwcgB150
ClCG07G008650Bottle gourd (USVL1VR-Ls)lsiwcgB413
ClCG07G008650Cucumber (Gy14) v2cgybwcgB303
ClCG07G008650Cucumber (Gy14) v2cgybwcgB450
ClCG07G008650Melon (DHL92) v3.6.1medwcgB479
ClCG07G008650Melon (DHL92) v3.6.1medwcgB539