ClCG07G007610 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G007610
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 20128136 .. 20128899 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCTAATGGAGCAAACAATGCGGCCAACAACTCATTGGCTCAAGCTCAGATTCAAGCACACCCAATTCTTTTGGCACATGGCTGTAACAGGCTAATTAGAAATTATGCGTGGCCTAATCTTTACGACTTTTCACTTTGTATTATGCGTTCTACCTTCCAAGGGTCAAGGTTTGAGATGAACCCTATAATGCTTCAAATGCTCCAAACTACAAGGCAATTTGGAGGAGCACCAAATGAGGATCCTCACTTCCAGCTAAAGAGTTTCATAATCCCCAACATCACAGTAGAAGAAATCAGATTGACAATTGTTCCCTTTCTCTCTAAGAGATGAGGCGCGACAATGTGCATATTCCTTAAAACCAAGTGAAATAACCACCTAGGAACAAATAATAGAAAAGTAAATGAAAAAGTATTTCCCGCCAACTAAAAATGCAAAAAGAAGAAGAGACATTACGAATTTCCAACATAAAGATGGAGAAACCTTGAGCGACACCTAGGCAATGTTGCTCACATAACGATTTCTCAGAGTGCATTCAAATGGAAATCTTCTATGATGGCCTGAACAAAGCCTCTCAAACAGCTACAAATGTTGTCGTAGCTGGTGGTTTACTTGATAAAATGTACACTGAGGCAATTGATATTTTGGATATGATTTCTAGAAATCATGAAGACTGGGAAGATAATGGTTACAATAGATCTGGAAGACGAAGAAGCAGTAATTTGAGAACGCCTGAAAATGATACAGTCGCTGCATTATAA

mRNA sequence

ATGGTTCCTAATGGAGCAAACAATGCGGCCAACAACTCATTGGCTCAAGCTCAGATTCAAGCACACCCAATTCTTTTGGCACATGGCTGTAACAGGCTAATTAGAAATTATGCGTGGCCTAATCTTTACGACTTTTCACTTTGTATTATGCGTTCTACCTTCCAAGGGTCAAGGCAATGTTGCTCACATAACGATTTCTCAGAGTGCATTCAAATGGAAATCTTCTATGATGGCCTGAACAAAGCCTCTCAAACAGCTACAAATGTTGTCGTAGCTGGTGGTTTACTTGATAAAATGTACACTGAGGCAATTGATATTTTGGATATGATTTCTAGAAATCATGAAGACTGGGAAGATAATGGTTACAATAGATCTGGAAGACGAAGAAGCAGTAATTTGAGAACGCCTGAAAATGATACAGTCGCTGCATTATAA

Coding sequence (CDS)

ATGGTTCCTAATGGAGCAAACAATGCGGCCAACAACTCATTGGCTCAAGCTCAGATTCAAGCACACCCAATTCTTTTGGCACATGGCTGTAACAGGCTAATTAGAAATTATGCGTGGCCTAATCTTTACGACTTTTCACTTTGTATTATGCGTTCTACCTTCCAAGGGTCAAGGCAATGTTGCTCACATAACGATTTCTCAGAGTGCATTCAAATGGAAATCTTCTATGATGGCCTGAACAAAGCCTCTCAAACAGCTACAAATGTTGTCGTAGCTGGTGGTTTACTTGATAAAATGTACACTGAGGCAATTGATATTTTGGATATGATTTCTAGAAATCATGAAGACTGGGAAGATAATGGTTACAATAGATCTGGAAGACGAAGAAGCAGTAATTTGAGAACGCCTGAAAATGATACAGTCGCTGCATTATAA

Protein sequence

MVPNGANNAANNSLAQAQIQAHPILLAHGCNRLIRNYAWPNLYDFSLCIMRSTFQGSRQCCSHNDFSECIQMEIFYDGLNKASQTATNVVVAGGLLDKMYTEAIDILDMISRNHEDWEDNGYNRSGRRRSSNLRTPENDTVAAL
Homology
[Close]
BLAST of ClCG07G007610 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-06
Identity = 31/84 (36.90%), Postives = 42/84 (50.00%), Query Frame = 1 

Query: 61  CSHNDFSECIQMEIFYDGLNKASQTATNVVVAGGLLDKMYTEAIDILDMISRNHEDWEDN 120
           C H+    CIQME FY+GLN AS+   +    G +L K Y EA +IL+ I+ N+  W   
Sbjct: 173 CPHHGIPHCIQMETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW--- 232

Query: 121 GYNRSGRRRSSNLRTPENDTVAAL 145
                     SN R P +  VA +
Sbjct: 233 ----------SNTRAPTSRKVAGV 243

[Close]
BLAST of ClCG07G007610 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-06
Identity = 31/84 (36.90%), Postives = 42/84 (50.00%), Query Frame = 1 

Query: 61  CSHNDFSECIQMEIFYDGLNKASQTATNVVVAGGLLDKMYTEAIDILDMISRNHEDWEDN 120
           C H+    CIQME FY+GLN AS+   +    G +L K Y EA +IL+ I+ N+  W   
Sbjct: 173 CPHHGIPHCIQMETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW--- 232

Query: 121 GYNRSGRRRSSNLRTPENDTVAAL 145
                     SN R P +  VA +
Sbjct: 233 ----------SNTRAPTSRKVAGV 243

The following BLAST results are available for this feature:
BLAST of ClCG07G007610 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC5.8e-0636.90Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
BLAST of ClCG07G007610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548830333|gb|ERM93404.1|8.3e-0636.90hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G007610.1ClCG07G007610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G007610Melon (DHL92) v3.6.1medwcgB479
ClCG07G007610Silver-seed gourdcarwcgB0577
ClCG07G007610Silver-seed gourdcarwcgB0916
ClCG07G007610Cucumber (Chinese Long) v3cucwcgB344
ClCG07G007610Watermelon (97103) v2wcgwmbB307
ClCG07G007610Wax gourdwcgwgoB560
ClCG07G007610Cucumber (Gy14) v1cgywcgB151
ClCG07G007610Cucurbita maxima (Rimu)cmawcgB301
ClCG07G007610Cucurbita maxima (Rimu)cmawcgB668
ClCG07G007610Cucurbita moschata (Rifu)cmowcgB294
ClCG07G007610Cucurbita moschata (Rifu)cmowcgB670
ClCG07G007610Wild cucumber (PI 183967)cpiwcgB342
ClCG07G007610Cucumber (Chinese Long) v2cuwcgB325
ClCG07G007610Melon (DHL92) v3.5.1mewcgB484
ClCG07G007610Watermelon (97103) v1wcgwmB381
ClCG07G007610Cucurbita pepo (Zucchini)cpewcgB210
ClCG07G007610Cucurbita pepo (Zucchini)cpewcgB405
ClCG07G007610Bottle gourd (USVL1VR-Ls)lsiwcgB415
ClCG07G007610Cucumber (Gy14) v2cgybwcgB303