ClCG07G007330 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G007330
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-directed RNA polymerase subunit beta''
Location	CG_Chr07 : 18296993 .. 18298030 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTGAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACAAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGGGTATCGAAGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTAAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGCGTAGGCGGATTGGTCCGAGTGGATAAAAAAAAAAGGATTGAACTCAAAATATTTTCCGGAGACATACATTTTCCTGGAGAGATGGATAAGATATCCTGACACAATGGCATCTTGATACCACCTGAAAGAGTAAAAAAAATTCTAAGAAATCAAAAAAATTGAAAAATTGGATTTATGTCCAGTGGATCACACCTACAAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGATATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCAGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGT

mRNA sequence

AATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTGAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACAAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGAATACCCATAAATGGTATTTTTCAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGGGTATCGAAGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTAAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGCGTAGGCGGATTGGTCCGATGGATCACACCTACAAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGATATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCAGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGT

Coding sequence (CDS)

AATAATGATAAAGTGAGACAAAAATTTTATGGTCTGGATCTCTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTGAATCCAATCCTATGTACGGGTCAATCTAATTTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGACGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACAAGAAAAAGAACTACCACCCCCTTCCGGTATTTCGAATACCCATAAATGGTATTTTTCAAATAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAATAGTTCAGGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTCAAAAAAGAGGATTTGATTGGGTATCGAAGAGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCTAAATCTTCTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGCGTAGGCGGATTGGTCCGATGGATCACACCTACAAAGAAAAAGTATTTTGTTTTTGTTCGACCTGTAATCATATATGAACTAACCGACGATATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCCTTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCAGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCGCGCGCTTCCTTTGTTGAAGTAACTACAAATGGT

Protein sequence

NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGFIIQFESLQEQEKELPPPSGISNTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRLTLSIRSRVGGLVRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG

Homology

[Close]

BLAST of ClCG07G007330 vs. Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 5.8e-91
Identity = 172/193 (89.12%), Postives = 176/193 (91.19%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NNDKV QKFYG DLSGKNE+GIPDYSELNPILCTGQSN TYPAIFHGNSDLLAKRRRNGF
Sbjct: 520 NNDKVGQKFYGPDLSGKNENGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKEL PPSGIS     +  +  NSILA+FDDPQYRRNSSGITKYGTIGVH
Sbjct: 580 IIQFESLQEREKELRPPSGISIEIPINGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVDRFFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

HSP 2 Score: 192.2 bits (487), Expect = 7.9e-48
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLV LFPQDLLQERDNLELRV NYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIE+ARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNG 868

[Close]

BLAST of ClCG07G007330 vs. Swiss-Prot
Match: RPOC2_VITVI (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.5e-67
Identity = 138/192 (71.88%), Postives = 151/192 (78.65%), Query Frame = 1


Query: 2   NDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGFI 61
           ND+V  +F+  DLSGK E  IP YSELN I+ TG+ N   PAI H NSDLLAKRRRN FI
Sbjct: 521 NDQVIHEFFSSDLSGKKEGRIPAYSELNRIIYTGRYNLIDPAILHENSDLLAKRRRNRFI 580

Query: 62  IQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVHS 121
           I F+S+QE EKEL PPSGIS     +  +  NSILAYFDDP+YRRNSSGITKYGTI  HS
Sbjct: 581 IPFQSIQEGEKELMPPSGISIEIPINGIFRRNSILAYFDDPRYRRNSSGITKYGTIEAHS 640

Query: 122 ILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRLT 181
           I+KKEDLI YR VK+FKPKY  QMKVDRFFFIPEEVHILP S+SIMVRNNSIIGV TR+T
Sbjct: 641 IVKKEDLIEYRGVKEFKPKY--QMKVDRFFFIPEEVHILPGSASIMVRNNSIIGVDTRIT 700

Query: 182 LSIRSRVGGLVR 191
           L+ RSRV GLVR
Sbjct: 701 LNTRSRVSGLVR 710

HSP 2 Score: 161.8 bits (408), Expect = 1.1e-38
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+ ITPTKKKYFV VRPV+ YE+ D INL TLFPQDLLQERDN+ L+VVNYILYGNGKPI
Sbjct: 765 VQGITPTKKKYFVLVRPVVTYEIADGINLATLFPQDLLQERDNMHLQVVNYILYGNGKPI 824

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGIS TSIQLV+TCL+LNW ++KKSS IE+  ASF+EV TNG
Sbjct: 825 RGISDTSIQLVRTCLVLNWYQEKKSSPIEKTHASFMEVRTNG 866

[Close]

BLAST of ClCG07G007330 vs. Swiss-Prot
Match: RPOC2_MANES (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.0e-66
Identity = 135/201 (67.16%), Postives = 154/201 (76.62%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NND+V+ KF+  D SGK ESGIPDYSELN  +CTG  N  Y  I + NSDLLAKRRRN F
Sbjct: 520 NNDQVKHKFFSSDFSGKKESGIPDYSELNRSICTGHCNLIYSTILYKNSDLLAKRRRNKF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           II F+S+QE+EKEL   S IS     +  +  NS+ AYFDDPQYR+ SSGITKYG IGVH
Sbjct: 580 IIPFQSIQEREKELMTQSAISIEIPINGIFRRNSVFAYFDDPQYRKKSSGITKYGAIGVH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SI+KKEDLI YR VK+FKPKY  Q KVDRFFFIPEEV+ILP+SSS+MVRNNSIIGV T++
Sbjct: 640 SIVKKEDLIEYRGVKEFKPKY--QTKVDRFFFIPEEVYILPESSSLMVRNNSIIGVDTQI 699

Query: 181 TLSIRSRVGGLVRWITPTKKK 199
            L+ RSRVGGLVR +   KKK
Sbjct: 700 ALNTRSRVGGLVR-VERKKKK 717

HSP 2 Score: 174.1 bits (440), Expect = 2.2e-42
Identity = 96/164 (58.54%), Postives = 118/164 (71.95%), Query Frame = 1


Query: 127 GYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRLTLSIRSRVG 186
           G  RV+  K K ++++      F P E   + + S I++   +   V T    S + +  
Sbjct: 707 GLVRVERKKKKMELKIFSGDIHF-PGETDKISRHSDILIPPGT---VKTNSKESKKVKNW 766

Query: 187 GLVRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGK 246
             ++ ITPTKKKYFV VRPVIIYE+ + INL TLFPQDLLQE+DNL+LRVVNYILYG GK
Sbjct: 767 IYIQRITPTKKKYFVLVRPVIIYEIANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGK 826

Query: 247 PIRGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           PIRGIS TSIQLV+TCL+LNWD+DKKSSSIEEARA+FVE++TNG
Sbjct: 827 PIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEARAAFVEISTNG 866

[Close]

BLAST of ClCG07G007330 vs. Swiss-Prot
Match: RPOC2_POPAL (DNA-directed RNA polymerase subunit beta'' OS=Populus alba GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 166/351 (47.29%), Postives = 202/351 (57.55%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNE--SGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRN 60
           NNDKV+ KF+   LS K++  S I DYS+LN I+CTG   F YP I H NSDLLAKRR+N
Sbjct: 516 NNDKVKHKFFSSYLSSKSKKKSRILDYSDLNRIICTG---FIYPTILHENSDLLAKRRKN 575

Query: 61  GFIIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIG 120
            FII F+S+QE  KEL   S I      +  +  NSI AYFDDPQYRR SSGITKY  IG
Sbjct: 576 RFIIPFQSIQE--KELMSHSDILIEIPINGIFRRNSIFAYFDDPQYRRKSSGITKYVAIG 635

Query: 121 VHSILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVAT 180
           VHSI+KKEDL+ YR VK+F+PKY  QMKVDRFFFIPEEV+ILP+SSS+MVRNNSIIGV T
Sbjct: 636 VHSIVKKEDLVEYRGVKEFQPKY--QMKVDRFFFIPEEVYILPESSSLMVRNNSIIGVDT 695

Query: 181 RLTLSIRSRVGGLVRWITPTKK-KYFVFVRPVIIYELTDDINLVT--LFPQDLLQERDNL 240
           ++TL+ +SRVGGL+R     KK +  +F   +     TD I+  +  L P   ++     
Sbjct: 696 QITLNTKSRVGGLIRIERKKKKMELKIFSGDIHFPRATDKISRYSGILIPPGTVKTNSKE 755

Query: 241 ELRVVNYILYGNGKPIRGIS------------GTSIQLV--------------------- 291
             +V N+I      P +  S            G  I L                      
Sbjct: 756 SKKVKNWIYVQRITPTKKKSFVLVRPVLIYERGDGINLERLFPPDLLQEKENLKLRIVNY 815

[Close]

BLAST of ClCG07G007330 vs. Swiss-Prot
Match: RPOC2_SOLTU (DNA-directed RNA polymerase subunit beta'' OS=Solanum tuberosum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-65
Identity = 130/192 (67.71%), Postives = 147/192 (76.56%), Query Frame = 1


Query: 2   NDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGFI 61
           ND+ RQK +  D  G+ E  IPDYS+LN I+CTGQ N  Y  I HGNSDLL+KRRRN FI
Sbjct: 521 NDQARQKLFSSDFYGQKEDRIPDYSDLNRIICTGQYNLVYSPILHGNSDLLSKRRRNKFI 580

Query: 62  IQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVHS 121
           I   S+QE E EL P SGIS     +  +  NSILAYFDDP+YRR SSGI KYGTI  HS
Sbjct: 581 IPLHSIQELENELMPCSGISIEIPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTIETHS 640

Query: 122 ILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRLT 181
           ++KKEDLI YR VK+F+PKY  QMKVDRFFFIPEEVHILP SSSIMVRNNSI+GV T++T
Sbjct: 641 VIKKEDLIEYRGVKEFRPKY--QMKVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQIT 700

Query: 182 LSIRSRVGGLVR 191
           L++RSRVGGLVR
Sbjct: 701 LNLRSRVGGLVR 710

HSP 2 Score: 163.3 bits (412), Expect = 3.9e-39
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+ ITP+KK++FV VRPV+ YE+TD INL TLFP D LQERDN++LR+VNYILYGNGKPI
Sbjct: 765 VQRITPSKKRFFVLVRPVVTYEITDGINLGTLFPPDPLQERDNVQLRIVNYILYGNGKPI 824

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGIS TSIQLV+TCL+LNW++DKKSSS EEARASFVE+ TNG
Sbjct: 825 RGISDTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNG 866

[Close]

BLAST of ClCG07G007330 vs. TrEMBL
Match: F8TCW9_9ROSI (DNA-directed RNA polymerase subunit (Fragment) OS=Erythroxylum areolatum GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.0e-94
Identity = 196/316 (62.03%), Postives = 228/316 (72.15%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NND+V+ KF+  DL GK ES I DYSELN I+CTG  N  YPAI H NSDLLAKRRRN F
Sbjct: 520 NNDQVKHKFFSSDLPGKKESAISDYSELNRIICTGYCNRIYPAIPHENSDLLAKRRRNRF 579

Query: 61  IIQFESLQEQEKELPPPSGISNTHKW--YFSNSILAYFDDPQYRRNSSGIT-KYGTIGVH 120
           II  +S+QE+EKEL P SGIS       +  NSI AYFDDPQYRRNS GIT KYG +GVH
Sbjct: 580 IIPLQSIQEREKELMPCSGISIEIPIGIFRRNSIFAYFDDPQYRRNSLGITTKYGDVGVH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIG----- 180
           SI+ KE+LI Y+ VK+FKPKY    KVDRFFFIPEE++I P+S S+MVRNNSI G     
Sbjct: 640 SIVTKENLIEYQGVKEFKPKYHT--KVDRFFFIPEEIYIFPESYSLMVRNNSISGDIYFP 699

Query: 181 ------------------VATRLTLSIRSRVGGLVRWITPTKKKYFVFVRPVIIYELTDD 240
                             + T    + +++    V+ ITPTKKK+FV VRPVIIYE+ D 
Sbjct: 700 GETDKISRHSGILISPGMIKTHFKEAKKAKNWIYVQRITPTKKKFFVLVRPVIIYEMADS 759

Query: 241 INLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVQTCLLLNWDRDKKSS 291
           INL TLFPQDLLQE+DNL+LRVVNYIL GNGK IRGIS TSIQLV+TCL+L WD+DKK  
Sbjct: 760 INLETLFPQDLLQEKDNLKLRVVNYILCGNGKLIRGISDTSIQLVRTCLVLIWDQDKKGF 819

[Close]

BLAST of ClCG07G007330 vs. TrEMBL
Match: A0A0S2IEI2_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita digitata GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.7e-89
Identity = 172/193 (89.12%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           N+DKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSN TYP+IFHGNSDLLAKRRRNGF
Sbjct: 520 NHDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPSIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKELPPPSGIS     +  +  NSILAYFDDPQYRRNSSGITKYGTIG+H
Sbjct: 580 IIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGMH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVD FFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDPFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. TrEMBL
Match: A0A0S2IEI2_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita digitata GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.6e-47
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLVTLFPQDLLQERDNLELRV+NYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVINYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIEEARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNG 868

HSP 2 Score: 337.4 bits (864), Expect = 1.7e-89
Identity = 172/193 (89.12%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           N+DKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSN TYP+IFHGNSDLLAKRRRNGF
Sbjct: 520 NHDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPSIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKELPPPSGIS     +  +  NSILAYFDDPQYRRNSSGITKYGTIG+H
Sbjct: 580 IIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGMH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVD FFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDPFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. TrEMBL
Match: A0A0S2IEB7_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita cordata GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.6e-47
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLVTLFPQDLLQERDNLELRV+NYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVINYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIEEARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNG 868

HSP 2 Score: 337.0 bits (863), Expect = 2.2e-89
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NNDKV QKFYG DLSGKNESGIPDYSELNPILCTGQSN TYPAIFHGNSDLLAKRRRNGF
Sbjct: 520 NNDKVGQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKEL PPSGIS     +  +  NSILA+FDDPQYRRNSSGITKYGTIGVH
Sbjct: 580 IIQFESLQEREKELRPPSGISIEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVDRFFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. TrEMBL
Match: G3ETX5_CUCME (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. melo GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.0e-46
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLV LFPQDLLQERDNLELRVVNYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIE+ARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNG 868

HSP 2 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSN T PAIFHGNSDLLAKRRRNGF
Sbjct: 520 NNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTDPAIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKELPPPSGIS     +  +  NSILAYFDDPQYRRNSSGITKYGTIG+H
Sbjct: 580 IIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGMH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVD FFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDPFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-59
Identity = 122/193 (63.21%), Postives = 143/193 (74.09%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NND+V QKF+  D +   + GI DYSELN  L T   N  Y AIFH NSDLLAKRRRN F
Sbjct: 518 NNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRF 577

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           +I F+S+QEQEKE  P SGIS     +  +  NSI A+FDDP+YRR SSGI KYGT+   
Sbjct: 578 LIPFQSIQEQEKEFIPQSGISVEIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKAD 637

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SI++KED+I YR V+  K KY  +MKVDRFFFIPEEVHILP+SS+IMV+N SIIGV TRL
Sbjct: 638 SIIQKEDMIEYRGVQKIKTKY--EMKVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRL 697

Query: 181 TLSIRSRVGGLVR 191
           TL+IRS+VGGL+R
Sbjct: 698 TLNIRSQVGGLIR 708

HSP 2 Score: 148.7 bits (374), Expect = 5.7e-36
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+ ITPTKKK+FV VRPV  YE+ D INL TLFPQDL +E+DN++LRV NYILYGNGKP 
Sbjct: 763 VQRITPTKKKFFVLVRPVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPT 822

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGIS TSIQLV+TCL+LNWD   K+SS+EE RA FVEV+T G
Sbjct: 823 RGISDTSIQLVRTCLVLNWD---KNSSLEEVRAFFVEVSTKG 861

[Close]

BLAST of ClCG07G007330 vs. NCBI nr
Match: gi|335352794|gb|AEH42619.1| (RNA polymerase beta subunit [Erythroxylum areolatum])

HSP 1 Score: 354.8 bits (909), Expect = 1.5e-94
Identity = 196/316 (62.03%), Postives = 228/316 (72.15%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NND+V+ KF+  DL GK ES I DYSELN I+CTG  N  YPAI H NSDLLAKRRRN F
Sbjct: 520 NNDQVKHKFFSSDLPGKKESAISDYSELNRIICTGYCNRIYPAIPHENSDLLAKRRRNRF 579

Query: 61  IIQFESLQEQEKELPPPSGISNTHKW--YFSNSILAYFDDPQYRRNSSGIT-KYGTIGVH 120
           II  +S+QE+EKEL P SGIS       +  NSI AYFDDPQYRRNS GIT KYG +GVH
Sbjct: 580 IIPLQSIQEREKELMPCSGISIEIPIGIFRRNSIFAYFDDPQYRRNSLGITTKYGDVGVH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIG----- 180
           SI+ KE+LI Y+ VK+FKPKY    KVDRFFFIPEE++I P+S S+MVRNNSI G     
Sbjct: 640 SIVTKENLIEYQGVKEFKPKYHT--KVDRFFFIPEEIYIFPESYSLMVRNNSISGDIYFP 699

Query: 181 ------------------VATRLTLSIRSRVGGLVRWITPTKKKYFVFVRPVIIYELTDD 240
                             + T    + +++    V+ ITPTKKK+FV VRPVIIYE+ D 
Sbjct: 700 GETDKISRHSGILISPGMIKTHFKEAKKAKNWIYVQRITPTKKKFFVLVRPVIIYEMADS 759

Query: 241 INLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVQTCLLLNWDRDKKSS 291
           INL TLFPQDLLQE+DNL+LRVVNYIL GNGK IRGIS TSIQLV+TCL+L WD+DKK  
Sbjct: 760 INLETLFPQDLLQEKDNLKLRVVNYILCGNGKLIRGISDTSIQLVRTCLVLIWDQDKKGF 819

[Close]

BLAST of ClCG07G007330 vs. NCBI nr
Match: gi|952954561|gb|ALO21922.1| (RpoC2 (plastid) [Cucurbita cordata])

HSP 1 Score: 337.4 bits (864), Expect = 2.4e-89
Identity = 172/193 (89.12%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           N+DKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSN TYP+IFHGNSDLLAKRRRNGF
Sbjct: 520 NHDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPSIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKELPPPSGIS     +  +  NSILAYFDDPQYRRNSSGITKYGTIG+H
Sbjct: 580 IIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGMH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVD FFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDPFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. NCBI nr
Match: gi|952954561|gb|ALO21922.1| (RpoC2 (plastid) [Cucurbita cordata])

HSP 1 Score: 196.8 bits (499), Expect = 5.1e-47
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLVTLFPQDLLQERDNLELRV+NYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVINYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIEEARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNG 868

HSP 2 Score: 337.0 bits (863), Expect = 3.2e-89
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NNDKV QKFYG DLSGKNESGIPDYSELNPILCTGQSN TYPAIFHGNSDLLAKRRRNGF
Sbjct: 520 NNDKVGQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKEL PPSGIS     +  +  NSILA+FDDPQYRRNSSGITKYGTIGVH
Sbjct: 580 IIQFESLQEREKELRPPSGISIEIPINGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVDRFFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. NCBI nr
Match: gi|346578181|ref|YP_004841773.1| (RNA polymerase beta'' subunit [Cucumis melo subsp. melo])

HSP 1 Score: 193.7 bits (491), Expect = 4.4e-46
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLV LFPQDLLQERDNLELRVVNYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIE+ARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNG 868

HSP 2 Score: 336.7 bits (862), Expect = 4.2e-89
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSN T PAIFHGNSDLLAKRRRNGF
Sbjct: 520 NNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTDPAIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKELPPPSGIS     +  +  NSILAYFDDPQYRRNSSGITKYGTIG+H
Sbjct: 580 IIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGMH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVD FFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDPFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

[Close]

BLAST of ClCG07G007330 vs. NCBI nr
Match: gi|952954768|gb|ALO22126.1| (RpoC2 (plastid) [Cucurbita ficifolia])

HSP 1 Score: 196.8 bits (499), Expect = 5.1e-47
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 1


Query: 189 VRWITPTKKKYFVFVRPVIIYELTDDINLVTLFPQDLLQERDNLELRVVNYILYGNGKPI 248
           V+WITPTKKKYFVFVRPVIIYEL D INLVTLFPQDLLQERDNLELRV+NYILYGNGKPI
Sbjct: 767 VQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVINYILYGNGKPI 826

Query: 249 RGISGTSIQLVQTCLLLNWDRDKKSSSIEEARASFVEVTTNG 291
           RGISGTSIQLV+TCLLLNWDRDKKSSSIEEARASFVEV+TNG
Sbjct: 827 RGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNG 868

HSP 2 Score: 336.7 bits (862), Expect = 4.2e-89
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1


Query: 1   NNDKVRQKFYGLDLSGKNESGIPDYSELNPILCTGQSNFTYPAIFHGNSDLLAKRRRNGF 60
           NNDKVRQKFYG DLSGKNESGIPDYSELNPILCTGQSN T PAIFHGNSDLLAKRRRNGF
Sbjct: 520 NNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTDPAIFHGNSDLLAKRRRNGF 579

Query: 61  IIQFESLQEQEKELPPPSGIS---NTHKWYFSNSILAYFDDPQYRRNSSGITKYGTIGVH 120
           IIQFESLQE+EKELPPPSGIS     +  +  NSILAYFDDPQYRRNSSGITKYGTIG+H
Sbjct: 580 IIQFESLQEREKELPPPSGISIEIPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGMH 639

Query: 121 SILKKEDLIGYRRVKDFKPKYQMQMKVDRFFFIPEEVHILPKSSSIMVRNNSIIGVATRL 180
           SILKKEDLI YR VKDFKPKYQMQMKVD FFFIPEEVHILP+SSSIMVRNNSIIGVATRL
Sbjct: 640 SILKKEDLIEYRGVKDFKPKYQMQMKVDPFFFIPEEVHILPESSSIMVRNNSIIGVATRL 699

Query: 181 TLSIRSRVGGLVR 191
           TLSIRSRVGGLVR
Sbjct: 700 TLSIRSRVGGLVR 712

The following BLAST results are available for this feature:

BLAST of ClCG07G007330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPOC2_CUCSA	5.8e-91	89.12	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1	[more]
RPOC2_VITVI	4.5e-67	71.88	DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera GN=rpoC2 PE=3 SV=1	[more]
RPOC2_MANES	1.0e-66	67.16	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta GN=rpoC2 PE=3 SV...	[more]
RPOC2_POPAL	1.1e-65	47.29	DNA-directed RNA polymerase subunit beta'' OS=Populus alba GN=rpoC2 PE=3 SV=1	[more]
RPOC2_SOLTU	1.9e-65	67.71	DNA-directed RNA polymerase subunit beta'' OS=Solanum tuberosum GN=rpoC2 PE=3 SV...	[more]

BLAST of ClCG07G007330 vs. TrEMBL


Match Name	E-value	Identity	Description
F8TCW9_9ROSI	1.0e-94	62.03	DNA-directed RNA polymerase subunit (Fragment) OS=Erythroxylum areolatum GN=rpoC...	[more]
A0A0S2IEI2_9ROSI	1.7e-89	89.12	DNA-directed RNA polymerase subunit OS=Cucurbita digitata GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IEI2_9ROSI	3.6e-47	94.12	DNA-directed RNA polymerase subunit OS=Cucurbita digitata GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IEB7_9ROSI	3.6e-47	94.12	DNA-directed RNA polymerase subunit OS=Cucurbita cordata GN=rpoC2 PE=3 SV=1	[more]
G3ETX5_CUCME	3.0e-46	93.14	DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. melo GN=rpoC2 ...	[more]

BLAST of ClCG07G007330 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00170.1	2.1e-59	63.21	ATCG00170.1 DNA-directed RNA polymerase family protein	[more]

BLAST of ClCG07G007330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|335352794\|gb\|AEH42619.1\|	1.5e-94	62.03	RNA polymerase beta subunit [Erythroxylum areolatum]	[more]
gi\|952954561\|gb\|ALO21922.1\|	2.4e-89	89.12	RpoC2 (plastid) [Cucurbita cordata]	[more]
gi\|952954561\|gb\|ALO21922.1\|	5.1e-47	94.12	RpoC2 (plastid) [Cucurbita cordata]	[more]
gi\|346578181\|ref\|YP_004841773.1\|	4.4e-46	93.14	RNA polymerase beta'' subunit [Cucumis melo subsp. melo]	[more]
gi\|952954768\|gb\|ALO22126.1\|	5.1e-47	94.12	RpoC2 (plastid) [Cucurbita ficifolia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009536	plastid
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G007330.1	ClCG07G007330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34995	FAMILY NOT NAMED	coord: 49..194 score: 7.3
None	No IPR available	PANTHER	PTHR34995:SF1	SUBFAMILY NOT NAMED	coord: 49..194 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G007330	Cucurbita moschata (Rifu)	cmowcgB229
ClCG07G007330	Cucurbita moschata (Rifu)	cmowcgB428
ClCG07G007330	Wild cucumber (PI 183967)	cpiwcgB349
ClCG07G007330	Cucumber (Chinese Long) v2	cuwcgB329
ClCG07G007330	Melon (DHL92) v3.5.1	mewcgB499
ClCG07G007330	Watermelon (97103) v1	wcgwmB370
ClCG07G007330	Bottle gourd (USVL1VR-Ls)	lsiwcgB417
ClCG07G007330	Silver-seed gourd	carwcgB0679
ClCG07G007330	Watermelon (97103) v2	wcgwmbB307
ClCG07G007330	Wax gourd	wcgwgoB570
ClCG07G007330	Cucurbita maxima (Rimu)	cmawcgB429