ClCG07G006820 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G006820
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 13984162 .. 13985125 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTGGTGAATGTGATTTTTACAAGTCTTTTGAATTTTTTGGGACGATTAGGCGGCCTCTACATTAATTTAAGGGGTCAAGGCTACCTTCAAATTTATTCTCCTCGAGCTTTTTGGGATGTTGACTCATTTCGAGAAATGTTGCGTAAGTTCTCTATTTCATTTTCAAAAAAAATTAGTCTTAAAAATAGATTCTAACTGACAACATCTTAGTTAAACTAGACCAATTAGAACTAATGGTTTAAAATTATTATACCTTGGAAACCTTAGTTGTTAATCTTGGGATGTTTGTGTTTTGTTTTTTTTCCCTTAATATTTGTTTGTATTTCTCCTTACATCCTTTTTGTTGATTTTCTACTGTTTTGATTGAATAGATTAATTACACATTTATTTGGTTGATGGAATTAATGAACACAGGTGAGGTACTTAGTGATCAACGTAGGGTTCCACAAGAGAATGATGCAATTGTTTGGTATAGGACAAATTTACAATCTTTGTTTAATCGTTTTCCTCAAGAGCGTCGAATAATAGGTAATTTATTTATATTATGTAATGATGAATTAAAGGGTTTCATTATTTTAGAACAGAACTAATAGCTCATTATAATTCATTATAATTTTAAATCTCAATCACACAATTTCGACTTTAAAAGAAAATTAATTGAAACTAACTTAGTTTTTCTCAATGTCTACAGGTTGTTTACTCGATGACCATGATGGAAACAGACAAGAAATTAACATTCATGACTTTCTGAGATTTTTGGTTCATCCTAATGAAAATTTAATATTTGTGGTAAGTTTATATATACATGTGACAGGAAATAAACATTATCTTTTCTTCTAGTAAAGTTTATGATTAAATCTTGTTTTCTATTTATTCGATTTAGGTTGGTAACTTTAGAAACTATAGAGCGCTTGAGGAAGAGATTGATCAATATGTCAAAGGTACCAAATTATTTTAA

mRNA sequence

ATGCAGGTGGTGAATGTGATTTTTACAAGTCTTTTGAATTTTTTGGGACGATTAGGCGGCCTCTACATTAATTTAAGGGGTCAAGGCTACCTTCAAATTTATTCTCCTCGAGCTTTTTGGGATGTTGACTCATTTCGAGAAATGTTGCGTGAGGTACTTAGTGATCAACGTAGGGTTCCACAAGAGAATGATGCAATTGTTTGGTATAGGACAAATTTACAATCTTTGTTTAATCGTTTTCCTCAAGAGCGTCGAATAATAGGTAATTTATTTATATTATGTTGTTTACTCGATGACCATGATGGAAACAGACAAGAAATTAACATTCATGACTTTCTGAGATTTTTGGTTCATCCTAATGAAAATTTAATATTTGTGGTTGGTAACTTTAGAAACTATAGAGCGCTTGAGGAAGAGATTGATCAATATGTCAAAGGTACCAAATTATTTTAA

Coding sequence (CDS)

ATGCAGGTGGTGAATGTGATTTTTACAAGTCTTTTGAATTTTTTGGGACGATTAGGCGGCCTCTACATTAATTTAAGGGGTCAAGGCTACCTTCAAATTTATTCTCCTCGAGCTTTTTGGGATGTTGACTCATTTCGAGAAATGTTGCGTGAGGTACTTAGTGATCAACGTAGGGTTCCACAAGAGAATGATGCAATTGTTTGGTATAGGACAAATTTACAATCTTTGTTTAATCGTTTTCCTCAAGAGCGTCGAATAATAGGTAATTTATTTATATTATGTTGTTTACTCGATGACCATGATGGAAACAGACAAGAAATTAACATTCATGACTTTCTGAGATTTTTGGTTCATCCTAATGAAAATTTAATATTTGTGGTTGGTAACTTTAGAAACTATAGAGCGCTTGAGGAAGAGATTGATCAATATGTCAAAGGTACCAAATTATTTTAA

Protein sequence

MQVVNVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQRRVPQENDAIVWYRTNLQSLFNRFPQERRIIGNLFILCCLLDDHDGNRQEINIHDFLRFLVHPNENLIFVVGNFRNYRALEEEIDQYVKGTKLF
Homology
[Close]
BLAST of ClCG07G006820 vs. TrEMBL
Match: A0A0A0KJD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.2e-39
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1 

Query: 1  MQVVNVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQRRVP 60
          MQVV+VIFTSLLNFLGRLGGLYINLRGQGYLQI+SPRAFW+VDSFREMLREVLSDQ RVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIVWYRTNLQSLFNRFPQERRIIGNL 91
          QENDAIVW+RTNLQ+LFN FP+ERRIIG L
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTL 90

[Close]
BLAST of ClCG07G006820 vs. NCBI nr
Match: gi|700194491|gb|KGN49668.1| (hypothetical protein Csa_5G056070 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 1 

Query: 1  MQVVNVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQRRVP 60
          MQVV+VIFTSLLNFLGRLGGLYINLRGQGYLQI+SPRAFW+VDSFREMLREVLSDQ RVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIVWYRTNLQSLFNRFPQERRIIGNL 91
          QENDAIVW+RTNLQ+LFN FP+ERRIIG L
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTL 90

The following BLAST results are available for this feature:
BLAST of ClCG07G006820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJD0_CUCSA9.2e-3990.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1[more]
BLAST of ClCG07G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194491|gb|KGN49668.1|1.3e-3890.00hypothetical protein Csa_5G056070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G006820.1ClCG07G006820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G006820Cla97C07G134520Watermelon (97103) v2wcgwmbB307
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G006820Wax gourdwcgwgoB596
ClCG07G006820Cucumber (Gy14) v1cgywcgB460
ClCG07G006820Cucurbita maxima (Rimu)cmawcgB673
ClCG07G006820Cucurbita maxima (Rimu)cmawcgB674
ClCG07G006820Cucurbita moschata (Rifu)cmowcgB675
ClCG07G006820Cucurbita moschata (Rifu)cmowcgB676
ClCG07G006820Wild cucumber (PI 183967)cpiwcgB425
ClCG07G006820Cucumber (Chinese Long) v2cuwcgB407
ClCG07G006820Melon (DHL92) v3.5.1mewcgB068
ClCG07G006820Watermelon (97103) v1wcgwmB376
ClCG07G006820Cucurbita pepo (Zucchini)cpewcgB409
ClCG07G006820Cucurbita pepo (Zucchini)cpewcgB410
ClCG07G006820Bottle gourd (USVL1VR-Ls)lsiwcgB296
ClCG07G006820Cucumber (Gy14) v2cgybwcgB373
ClCG07G006820Melon (DHL92) v3.6.1medwcgB066
ClCG07G006820Silver-seed gourdcarwcgB0171
ClCG07G006820Silver-seed gourdcarwcgB0651
ClCG07G006820Cucumber (Chinese Long) v3cucwcgB427