ClCG07G005550 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G005550
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Self-incompatibility family protein
Location	CG_Chr07 : 8143539 .. 8143931 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAAGTGCAGTAAGACAACCAAACAGATCTCTTATTGTTATACCGAAATATCGTGTAGAAATTCGCAACGTGATGAAAATGTATATATTGGATACTCATTGTTGGTCGAAAGACAACAATTTAGGGTTAAATATACTTCTTCCAGGTGAAAAACAACACTGGTCATTCAGAAACAATTTTTGGGGAACAACCTTATTCCATTGCAGATTGGAATGGGAAAGAGGGTTTAAGGAGTTTGATGCATTTATTGTTGATGAAACTTTCATGAATGAGTTCTGTCCCAACAAACGATGTGTTTGGTTAGCCAAACAAGATGGACTTTATATGGTGAATGGAGCTGGTCAACATGTTCTTAAGTATCGCTGGAAAATGCTTCGAATGCCCTAA

mRNA sequence

ATGGTTGGAAGTGCAGTAAGACAACCAAACAGATCTCTTATTGTTATACCGAAATATCGTGAAAAACAACACTGGTCATTCAGAAACAATTTTTGGGGAACAACCTTATTCCATTGCAGATTGGAATGGGAAAGAGGGTTTAAGGAGTTTGATGCATTTATTGTTGATGAAACTTTCATGAATGAGTTCTGTCCCAACAAACGATGTGTTTGGTTAGCCAAACAAGATGGACTTTATATGGTGAATGGAGCTGGTCAACATGTTCTTAAGTATCGCTGGAAAATGCTTCGAATGCCCTAA

Coding sequence (CDS)

ATGGTTGGAAGTGCAGTAAGACAACCAAACAGATCTCTTATTGTTATACCGAAATATCGTGAAAAACAACACTGGTCATTCAGAAACAATTTTTGGGGAACAACCTTATTCCATTGCAGATTGGAATGGGAAAGAGGGTTTAAGGAGTTTGATGCATTTATTGTTGATGAAACTTTCATGAATGAGTTCTGTCCCAACAAACGATGTGTTTGGTTAGCCAAACAAGATGGACTTTATATGGTGAATGGAGCTGGTCAACATGTTCTTAAGTATCGCTGGAAAATGCTTCGAATGCCCTAA

Protein sequence

MVGSAVRQPNRSLIVIPKYREKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYMVNGAGQHVLKYRWKMLRMP

Homology

[Close]

BLAST of ClCG07G005550 vs. TrEMBL
Match: A0A0A0KL79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-17
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           EKQ WSF+ N+  TT FHCRLEWE G+ EFD+F     F+  +C N+ C+W A+QDG+Y+
Sbjct: 61  EKQDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFVTNYCGNQTCIWSARQDGVYL 120

Query: 81  VNGAGQHVLKYRWKMLR 98
            N AG+ V    W+M+R
Sbjct: 121 NNAAGEQVFYNYWEMIR 137

[Close]

BLAST of ClCG07G005550 vs. TrEMBL
Match: A0A0A0KSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           E Q WSF++N + TT F C LEWE G  EFD+F  +  F+N FC N  C W A+QDG+Y+
Sbjct: 73  ELQDWSFQDNDFETTKFRCILEWENGLLEFDSFKTNHNFLNNFCGNLTCSWSARQDGVYL 132

Query: 81  VNGAGQHVLKYRWKML 97
            N  G++V +  W ML
Sbjct: 133 TNVKGEYVFQDYWDML 148

[Close]

BLAST of ClCG07G005550 vs. TrEMBL
Match: M5VMC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024473mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1


Query: 25  WSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYMVN-G 84
           W FR NF+  TL+ C L W  G K FDAF+VDE  +   C +  C+W A+ DG+Y+ N  
Sbjct: 69  WEFRINFFDRTLYFCNLVWNGGHKTFDAFLVDEKALLNSCSSSDCMWRARDDGVYLFNYP 128

Query: 85  AGQHVLKYRWK 95
             Q+ LKY+W+
Sbjct: 129 HKQYRLKYQWE 139

[Close]

BLAST of ClCG07G005550 vs. TrEMBL
Match: V4T9D0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024107mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 24  HWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYMVN- 83
           +W+FR NFW TTLF C L W  G K  D +  D+ F+N++C    C W A+ DG+Y  + 
Sbjct: 64  NWTFRVNFWSTTLFFCDLRWASGHKACDVYCTDDQFLNKYCAYDFCRWSARDDGIYAFSE 123

Query: 84  GAGQHVLKYRW 94
              ++VL ++W
Sbjct: 124 KKKRYVLAHKW 134

[Close]

BLAST of ClCG07G005550 vs. TrEMBL
Match: A0A067FI95_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045824mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 24  HWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYMVN- 83
           +W+FR NFW TTLF C L W  G K  D +  D+ F+N++C    C W A+ DG+Y  + 
Sbjct: 34  NWTFRVNFWSTTLFFCDLRWASGHKACDVYCTDDQFLNKYCAYDFCRWSARDDGIYAFSE 93

Query: 84  GAGQHVLKYRW 94
              ++VL ++W
Sbjct: 94  KKKRYVLAHKW 104

[Close]

BLAST of ClCG07G005550 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 29/78 (37.18%), Postives = 40/78 (51.28%), Query Frame = 1


Query: 18  KYREKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDG 77
           K+ ++  W+F  N   +TLF C +  + G      F  D+  +   C  K CVW AK DG
Sbjct: 72  KFLDRFSWNFGENMLHSTLFWCYMSKDDGHMNVKVFW-DDVILFHRCDWKNCVWTAKNDG 131

Query: 78  LYMVNGA-GQHVLKYRWK 95
           LY+ N A G+ VL  +WK
Sbjct: 132 LYLWNSAIGEDVLSEKWK 148

[Close]

BLAST of ClCG07G005550 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 1


Query: 18  KYREKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDG 77
           K+R +  W+F  N   +T F C +  + G    + F  D+  +   C  K C+W AK DG
Sbjct: 72  KFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNVNVFW-DDVILFHRCGWKNCIWTAKTDG 131

Query: 78  LYMVNGA-GQHVLKYRWKM 96
           LY+ N A G+ VL  +W++
Sbjct: 132 LYLWNSASGEDVLSRKWEV 149

[Close]

BLAST of ClCG07G005550 vs. TAIR10
Match: AT4G24975.1 (AT4G24975.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 50.8 bits (120), Expect = 5.5e-07
Identity = 24/64 (37.50%), Postives = 27/64 (42.19%), Query Frame = 1


Query: 22  KQHWSFRN--NFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLY 81
           +QHW FR   +FWG TLF C  EWE   K FD  +         C    CVW  +  G  
Sbjct: 63  QQHWGFRKTLDFWGVTLFFCHFEWENQSKWFDILVAGRD--RNTCAEHPCVWSIRPSGPC 122

Query: 82  MVNG 84
            + G
Sbjct: 123 RLTG 124

[Close]

BLAST of ClCG07G005550 vs. NCBI nr
Match: gi|659105271|ref|XP_008453055.1| (PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-17
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           ++Q WSFR N+ GTT FHC+LEWE G+ EFDAF  D  F+  FC    C W A+QDG+Y+
Sbjct: 63  DEQSWSFRGNWLGTTNFHCKLEWENGYLEFDAFSNDVKFLTNFCAKSSCCWSARQDGVYL 122

Query: 81  VNGAGQHVLKYRWKMLR 98
            N  GQ V    W+M+R
Sbjct: 123 TNQNGQVVFNQNWEMIR 139

[Close]

BLAST of ClCG07G005550 vs. NCBI nr
Match: gi|700194417|gb|KGN49594.1| (hypothetical protein Csa_5G016040 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 7.2e-17
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           EKQ WSF+ N+  TT FHCRLEWE G+ EFD+F     F+  +C N+ C+W A+QDG+Y+
Sbjct: 61  EKQDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFVTNYCGNQTCIWSARQDGVYL 120

Query: 81  VNGAGQHVLKYRWKMLR 98
            N AG+ V    W+M+R
Sbjct: 121 NNAAGEQVFYNYWEMIR 137

[Close]

BLAST of ClCG07G005550 vs. NCBI nr
Match: gi|659134192|ref|XP_008467075.1| (PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-16
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           E+Q+WSF+ N+  TT FHC+LEWE  + EFD+F  D  F+  +C N+ C+W A+QDG+Y+
Sbjct: 72  EQQNWSFKGNWIATTDFHCKLEWEIAYLEFDSFKSDPDFVTNYCGNRTCIWSARQDGVYL 131

Query: 81  VNGAGQHVLKYRWKMLR 98
            N  GQ V    W+ML+
Sbjct: 132 NNAVGQQVFYDYWEMLK 148

[Close]

BLAST of ClCG07G005550 vs. NCBI nr
Match: gi|700196255|gb|KGN51432.1| (hypothetical protein Csa_5G538550 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           E Q WSF++N + TT F C LEWE G  EFD+F  +  F+N FC N  C W A+QDG+Y+
Sbjct: 73  ELQDWSFQDNDFETTKFRCILEWENGLLEFDSFKTNHNFLNNFCGNLTCSWSARQDGVYL 132

Query: 81  VNGAGQHVLKYRWKML 97
            N  G++V +  W ML
Sbjct: 133 TNVKGEYVFQDYWDML 148

[Close]

BLAST of ClCG07G005550 vs. NCBI nr
Match: gi|659105279|ref|XP_008453057.1| (PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-14
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 21  EKQHWSFRNNFWGTTLFHCRLEWERGFKEFDAFIVDETFMNEFCPNKRCVWLAKQDGLYM 80
           E+Q WSF +N + TT F CRLEWE G  EFD+F  D  F+N FC N  C W AKQDG+Y+
Sbjct: 54  EQQDWSFEDNIFETTKFRCRLEWENGLLEFDSFKSDLDFLNNFCGNLTCSWSAKQDGVYL 113

Query: 81  VNGAGQHVLK 91
            N    H +K
Sbjct: 114 TNAKETHRVK 123

The following BLAST results are available for this feature:

BLAST of ClCG07G005550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL79_CUCSA	5.0e-17	50.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1	[more]
A0A0A0KSN2_CUCSA	1.8e-14	48.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1	[more]
M5VMC1_PRUPE	2.7e-10	45.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024473mg PE=4 SV=1	[more]
V4T9D0_9ROSI	5.9e-10	40.85	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024107mg PE=4 SV=1	[more]
A0A067FI95_CITSI	5.9e-10	40.85	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045824mg PE=4 S...	[more]

BLAST of ClCG07G005550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29035.1	1.7e-08	37.18	Plant self-incompatibility protein S1 family	[more]
AT4G16295.1	2.2e-08	34.18	S-protein homologue 1	[more]
AT4G24975.1	5.5e-07	37.50	Plant self-incompatibility protein S1 family	[more]

BLAST of ClCG07G005550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105271\|ref\|XP_008453055.1\|	1.4e-17	51.95	PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo]	[more]
gi\|700194417\|gb\|KGN49594.1\|	7.2e-17	50.65	hypothetical protein Csa_5G016040 [Cucumis sativus]	[more]
gi\|659134192\|ref\|XP_008467075.1\|	4.7e-16	48.05	PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo]	[more]
gi\|700196255\|gb\|KGN51432.1\|	2.6e-14	48.68	hypothetical protein Csa_5G538550 [Cucumis sativus]	[more]
gi\|659105279\|ref\|XP_008453057.1\|	5.7e-14	52.86	PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G005550.1	ClCG07G005550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 18..93 score: 1.4
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 24..99 score: 7.0
None	No IPR available	PANTHER	PTHR31232:SF7	S PROTEIN HOMOLOGUE 74-RELATED	coord: 24..99 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G005550	Silver-seed gourd	carwcgB0171
ClCG07G005550	Silver-seed gourd	carwcgB0651
ClCG07G005550	Cucumber (Chinese Long) v3	cucwcgB428
ClCG07G005550	Watermelon (97103) v2	wcgwmbB307
ClCG07G005550	Wax gourd	wcgwgoB596
ClCG07G005550	Cucurbita maxima (Rimu)	cmawcgB673
ClCG07G005550	Cucurbita maxima (Rimu)	cmawcgB674
ClCG07G005550	Cucurbita moschata (Rifu)	cmowcgB675
ClCG07G005550	Cucurbita moschata (Rifu)	cmowcgB676
ClCG07G005550	Wild cucumber (PI 183967)	cpiwcgB426
ClCG07G005550	Melon (DHL92) v3.5.1	mewcgB033
ClCG07G005550	Melon (DHL92) v3.5.1	mewcgB490
ClCG07G005550	Watermelon (97103) v1	wcgwmB365
ClCG07G005550	Cucurbita pepo (Zucchini)	cpewcgB409
ClCG07G005550	Cucurbita pepo (Zucchini)	cpewcgB410
ClCG07G005550	Bottle gourd (USVL1VR-Ls)	lsiwcgB296
ClCG07G005550	Melon (DHL92) v3.6.1	medwcgB034
ClCG07G005550	Melon (DHL92) v3.6.1	medwcgB487