ClCG07G000840 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G000840
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 903697 .. 903981 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCACTTTCCTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAACATGATCGTCAAAATTGGTCCATGCTGATTCAACAGTCGCTGCAGAGGGCGCCCGTACCTCCGTCCGCCCGAGACGGTGGCACCAACATTCCGGTTCCGGTTGGGCAACAGGCCTTTGCCGGAAAATTCACGGCGCCGCCGGCATACGCCTATCCAGATCATCTATTGGTTCCTTCTGGTGTGGCCTTGAAGACAAATTGA

mRNA sequence

ATGAAGATCCAATTCACTTTCCTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAACATGATCGTCAAAATTGGTCCATGCTGATTCAACAGTCGCTGCAGAGGGCGCCCGTACCTCCGTCCGCCCGAGACGGTGGCACCAACATTCCGGTTCCGGTTGGGCAACAGGCCTTTGCCGGAAAATTCACGGCGCCGCCGGCATACGCCTATCCAGATCATCTATTGGTTCCTTCTGGTGTGGCCTTGAAGACAAATTGA

Coding sequence (CDS)

ATGAAGATCCAATTCACTTTCCTTTTAGCCATTTTGCTTCTTCTTGCCAATGCTCATCAGCTCCAAAGTTGTAGAACCATGAAACATGATCGTCAAAATTGGTCCATGCTGATTCAACAGTCGCTGCAGAGGGCGCCCGTACCTCCGTCCGCCCGAGACGGTGGCACCAACATTCCGGTTCCGGTTGGGCAACAGGCCTTTGCCGGAAAATTCACGGCGCCGCCGGCATACGCCTATCCAGATCATCTATTGGTTCCTTCTGGTGTGGCCTTGAAGACAAATTGA

Protein sequence

MKIQFTFLLAILLLLANAHQLQSCRTMKHDRQNWSMLIQQSLQRAPVPPSARDGGTNIPVPVGQQAFAGKFTAPPAYAYPDHLLVPSGVALKTN
Homology
[Close]
BLAST of ClCG07G000840 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 1  MKIQFTFLLAILLLLANAHQLQSCRTMKHDRQNWSM---LIQQSLQRAPVPPSARDGGTN 60
          MKIQF+FLLAIL+LLAN H LQSCRT+K D+QNWS+   L+QQSLQR PVPPSA++G TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQQAFAGKFTAPPAYAY 80
          IPVPVGQ+AFAGK +A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

[Close]
BLAST of ClCG07G000840 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 1  MKIQFTFLLAILLLLANAHQLQSCRTMKHDRQNWSM---LIQQSLQRAPVPPSARDGGTN 60
          MKIQF+FLLAIL+LLAN H LQSCRT+K D+QNWS+   L+QQSLQR PVPPSA++G TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQQAFAGKFTAPPAYAY 80
          IPVPVGQ+AFAGK +A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
BLAST of ClCG07G000840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA1.5e-2371.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
BLAST of ClCG07G000840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|2.2e-2371.95hypothetical protein Csa_3G393150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G000840.1ClCG07G000840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G000840Melon (DHL92) v3.6.1medwcgB390
ClCG07G000840Melon (DHL92) v3.6.1medwcgB439
ClCG07G000840Silver-seed gourdcarwcgB0228
ClCG07G000840Silver-seed gourdcarwcgB0730
ClCG07G000840Silver-seed gourdcarwcgB0760
ClCG07G000840Silver-seed gourdcarwcgB0938
ClCG07G000840Cucumber (Chinese Long) v3cucwcgB168
ClCG07G000840Cucumber (Chinese Long) v3cucwcgB264
ClCG07G000840Watermelon (97103) v2wcgwmbB304
ClCG07G000840Watermelon (97103) v2wcgwmbB305
ClCG07G000840Watermelon (97103) v2wcgwmbB307
ClCG07G000840Wax gourdwcgwgoB585
ClCG07G000840Watermelon (Charleston Gray)wcgwcgB164
ClCG07G000840Watermelon (Charleston Gray)wcgwcgB174
ClCG07G000840Cucumber (Gy14) v1cgywcgB457
ClCG07G000840Cucurbita maxima (Rimu)cmawcgB240
ClCG07G000840Cucurbita maxima (Rimu)cmawcgB467
ClCG07G000840Cucurbita maxima (Rimu)cmawcgB568
ClCG07G000840Cucurbita maxima (Rimu)cmawcgB811
ClCG07G000840Cucurbita moschata (Rifu)cmowcgB227
ClCG07G000840Cucurbita moschata (Rifu)cmowcgB466
ClCG07G000840Cucurbita moschata (Rifu)cmowcgB566
ClCG07G000840Cucurbita moschata (Rifu)cmowcgB808
ClCG07G000840Wild cucumber (PI 183967)cpiwcgB163
ClCG07G000840Wild cucumber (PI 183967)cpiwcgB264
ClCG07G000840Cucumber (Chinese Long) v2cuwcgB160
ClCG07G000840Cucumber (Chinese Long) v2cuwcgB255
ClCG07G000840Melon (DHL92) v3.5.1mewcgB402
ClCG07G000840Melon (DHL92) v3.5.1mewcgB445
ClCG07G000840Watermelon (97103) v1wcgwmB373
ClCG07G000840Watermelon (97103) v1wcgwmB382
ClCG07G000840Watermelon (97103) v1wcgwmB395
ClCG07G000840Cucurbita pepo (Zucchini)cpewcgB240
ClCG07G000840Cucurbita pepo (Zucchini)cpewcgB683
ClCG07G000840Bottle gourd (USVL1VR-Ls)lsiwcgB032
ClCG07G000840Bottle gourd (USVL1VR-Ls)lsiwcgB348
ClCG07G000840Bottle gourd (USVL1VR-Ls)lsiwcgB349
ClCG07G000840Cucumber (Gy14) v2cgybwcgB149
ClCG07G000840Cucumber (Gy14) v2cgybwcgB238