ClCG06G013960 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G013960
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 27401971 .. 27402577 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTAAACAAGAACCAACACCATTTGTCGTCAAAAGATATCCAATTATCGTACGACCCAAAAGCTTTGAACATGATTTTGAGATACTCAACTCATCAATGGTGGCCGTCGTTGATGACGACGTCCCACTTTCCATCTCAATGGACCGAGCCGAATCGACTTGGTTTTTCTCGTTCAAGTATTTGAACCGGCGAGAGAGTTGGAACCCGACGGCAGAGACGAAGACTTCGCCGCCGAGGAACATGAGGGTGGTGATGATGAGGAGTTGGAAATTGGAAAAAACTTCCATTTCAATGACAGACATGCTTGAAACGGAGACGGCAGAGACGGAGGTGAAGAAAATGTTGAGGTCATTTGGGGAGGAGGAGTTTCTAGTTTTGGTGAGCTTTAGAGCTCCAAAGCCTAAGAGAGAGATGGTTATGAAATAGGAGAGGTGAGACAAGAAGGGGCTGGCGACCGGTAGCGGCAACCGGAGAAGAGAACGCGGAGGAGATCGGAGGATGTAGAGAGGTAAGTTCTTCATGTTGGGGTTTTGTGCGGCGGTTGGAAGATGGCCGGCCGGGGAGATTTGGAGGAAGGAGAGTGGAGTGGAGGGGATTATAA

mRNA sequence

ATGAAGATTAAACAAGAACCAACACCATTTGTCGTCAAAAGATATCCAATTATCGTACGACCCAAAAGCTTTGAACATGATTTTGAGATACTCAACTCATCAATGGTGGCCGTCGTTGATGACGACGTCCCACTTTCCATCTCAATGGACCGAGCCGAATCGACTTGGTTTTTCTCGTTCAAGTATTTGAACCGGCGAGAGAGTTGGAACCCGACGGCAGAGACGAAGACTTCGCCGCCGAGGAACATGAGGGTGGTGATGATGAGGAGTTGGAAATTGGAAAAAACTTCCATTTCAATGACAGACATGCTTGAAACGGAGACGGCAGAGACGGAGGTGAAGAAAATGTTGAGGTCATTTGGGGAGGAGGAGTTTCTAGTTTTGGTGAGCTTTAGAGCTCCAAAGCCTAAGAGAGAGATGACAAGAAGGGGCTGGCGACCGGTAGCGGCAACCGGAGAAGAGAACGCGGAGGAGATCGGAGGATGTAGAGAGGTAAGTTCTTCATGTTGGGGTTTTGTGCGGCGGTTGGAAGATGGCCGGCCGGGGAGATTTGGAGGAAGGAGAGTGGAGTGGAGGGGATTATAA

Coding sequence (CDS)

ATGAAGATTAAACAAGAACCAACACCATTTGTCGTCAAAAGATATCCAATTATCGTACGACCCAAAAGCTTTGAACATGATTTTGAGATACTCAACTCATCAATGGTGGCCGTCGTTGATGACGACGTCCCACTTTCCATCTCAATGGACCGAGCCGAATCGACTTGGTTTTTCTCGTTCAAGTATTTGAACCGGCGAGAGAGTTGGAACCCGACGGCAGAGACGAAGACTTCGCCGCCGAGGAACATGAGGGTGGTGATGATGAGGAGTTGGAAATTGGAAAAAACTTCCATTTCAATGACAGACATGCTTGAAACGGAGACGGCAGAGACGGAGGTGAAGAAAATGTTGAGGTCATTTGGGGAGGAGGAGTTTCTAGTTTTGGTGAGCTTTAGAGCTCCAAAGCCTAAGAGAGAGATGACAAGAAGGGGCTGGCGACCGGTAGCGGCAACCGGAGAAGAGAACGCGGAGGAGATCGGAGGATGTAGAGAGGTAAGTTCTTCATGTTGGGGTTTTGTGCGGCGGTTGGAAGATGGCCGGCCGGGGAGATTTGGAGGAAGGAGAGTGGAGTGGAGGGGATTATAA

Protein sequence

MKIKQEPTPFVVKRYPIIVRPKSFEHDFEILNSSMVAVVDDDVPLSISMDRAESTWFFSFKYLNRRESWNPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRSFGEEEFLVLVSFRAPKPKREMTRRGWRPVAATGEENAEEIGGCREVSSSCWGFVRRLEDGRPGRFGGRRVEWRGL
Homology
[Close]
BLAST of ClCG06G013960 vs. TrEMBL
Match: B9S7S5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1381490 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 70  NPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRS--FGEEEFLV 129
           +P+ E KTSPP N++VV++ SW LEK SIS  DML+T  AETEVKKM  S    E+E +V
Sbjct: 187 SPSMEVKTSPPTNIKVVIIMSWVLEKASISTVDMLDTVVAETEVKKMSMSLILDEDEEVV 246

[Close]
BLAST of ClCG06G013960 vs. NCBI nr
Match: gi|223538640|gb|EEF40241.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 65.9 bits (159), Expect = 9.2e-08
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 70  NPTAETKTSPPRNMRVVMMRSWKLEKTSISMTDMLETETAETEVKKMLRS--FGEEEFLV 129
           +P+ E KTSPP N++VV++ SW LEK SIS  DML+T  AETEVKKM  S    E+E +V
Sbjct: 187 SPSMEVKTSPPTNIKVVIIMSWVLEKASISTVDMLDTVVAETEVKKMSMSLILDEDEEVV 246

The following BLAST results are available for this feature:
BLAST of ClCG06G013960 vs. TrEMBL
Match NameE-valueIdentityDescription
B9S7S5_RICCO6.4e-0857.38Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1381490 PE=4 SV=1[more]
BLAST of ClCG06G013960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223538640|gb|EEF40241.1|9.2e-0857.38conserved hypothetical protein [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G013960.1ClCG06G013960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G013960Cucurbita pepo (Zucchini)cpewcgB335
ClCG06G013960Cucurbita pepo (Zucchini)cpewcgB616
ClCG06G013960Bottle gourd (USVL1VR-Ls)lsiwcgB372
ClCG06G013960Cucumber (Gy14) v2cgybwcgB064
ClCG06G013960Melon (DHL92) v3.6.1medwcgB246
ClCG06G013960Silver-seed gourdcarwcgB0581
ClCG06G013960Silver-seed gourdcarwcgB0764
ClCG06G013960Cucumber (Chinese Long) v3cucwcgB075
ClCG06G013960Cucumber (Chinese Long) v3cucwcgB089
ClCG06G013960Watermelon (97103) v2wcgwmbB273
ClCG06G013960Wax gourdwcgwgoB548
ClCG06G013960Cucumber (Gy14) v1cgywcgB165
ClCG06G013960Cucumber (Gy14) v1cgywcgB488
ClCG06G013960Cucurbita maxima (Rimu)cmawcgB071
ClCG06G013960Cucurbita maxima (Rimu)cmawcgB135
ClCG06G013960Cucurbita moschata (Rifu)cmowcgB064
ClCG06G013960Cucurbita moschata (Rifu)cmowcgB119
ClCG06G013960Wild cucumber (PI 183967)cpiwcgB072
ClCG06G013960Wild cucumber (PI 183967)cpiwcgB084
ClCG06G013960Cucumber (Chinese Long) v2cuwcgB066
ClCG06G013960Melon (DHL92) v3.5.1mewcgB254
ClCG06G013960Watermelon (97103) v1wcgwmB344