ClCG06G009300 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G009300
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Protein ycf2
Location	CG_Chr06 : 15554861 .. 15556200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGGTTGGTCAGCCTTTACCTGACCAACGACCTATTGAGTCTTTATTTTTTTATATTTATATATAAAAAATGATATATAAAAATGAACGAATTGTAATGAATCGATTCCAACATCTCCAGTTGAAAAAAGAATCGAATATTCATTGATCAAATTATTTACTCCATCATACATAGTCTGATAGATCTTTTGAAGAACTGATTAATCAGATGTGAACAAAATAAAGATAGAGTCTCATTCTACATGTCAATACCGACAAAAATGACCCTGCGGTCGACATTCCATTCCCTTTAGTCATAGGTGCTCATTCGATTTTGATCTGAATGGGTTGGGTCTCCCAAGGCGAGGTACATATGACCGGCCCTTCAGGTGTCTCGATGATACAAACAAGGAAAAGTCGAATTCCAATCACATCCCCTATCATAACAAGCCAATCTGAGGAAACAGAATCGAATAATCTACCTGATTTTTGCCTTCCTGTTGATTCCGCCCGACAATCAAGTTGCACTTCCTTCTAACAAGTGGCTAAGAGTTAGCAAGCATCGATAAAAAGCCTAAACTTCAAGAATAGAACTGGACGCTTAATGGTAGTAAAGTCAGTCCAAGTCCATCTATAAAGACGGACAGATTCTTTGAGGCACATAGACCAATCAATCGTATCGGTAGCCGTTCTTAACCGAGACTCAGGTTAAGCTCTGTCTCGGAACCTTGTCGGGTTAGAAGTAAAGCATCCTGAGGTTGACGCATCTCGTTGGGCGTGGAGAAACATTAGGAACCAAAATAGCTTTCTTCGGAGCCGTTTCTTGTCCCGTCCCCCCGCCCCGGCATACCCGCTTCGCTTTCGATGATTCAGAAGAATCCATATTATGCAAGGAGACATTGCTTTTGCTATTGTCAGTATGGGGTCTTTGTTGCAGTTGGTATCAGACATGGTTGAAGCCACCAAAAAAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAGCTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCTGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA

mRNA sequence

ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGGTTGTTGGTATCAGACATGGTTGAAGCCACCAAAAAAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAGCTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCTGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA

Coding sequence (CDS)

ATGATCTCGCACTCGATAAAAGAGCTTTACAAGCGACATTGCCCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGGTTGTTGGTATCAGACATGGTTGAAGCCACCAAAAAAGGGCGACCCCTTTTCAAACCGAAAAAAGTACGTCACCTCAGTTACGAAGAAGTAGTTGGAGCTGGGCTTCGAACTATGGAGCGGTCTGACCCCTTATTTGATCAAACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAGTTAGGAGATTCTGTAGAAGAAATATGGGGTTCTGTTTCTAGTACCTAA

Protein sequence

MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPPRASTGRVSIPVWLIIQKDQLSIIGLLVSDMVEATKKGRPLFKPKKVRHLSYEEVVGAGLRTMERSDPLFDQTSELNSFWLKNLFLVALEQLGDSVEEIWGSVSST

Homology

[Close]

BLAST of ClCG06G009300 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-08
Identity = 28/32 (87.50%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            T E NSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1107 TYERNSFWLKNLFLVALEQLGDSLEEIWGSAS 1138

[Close]

BLAST of ClCG06G009300 vs. Swiss-Prot
Match: YCF2_SILLA (Protein Ycf2 OS=Silene latifolia GN=ycf2 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-08
Identity = 28/32 (87.50%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSE N FWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1336 TSESNFFWLKNLFLVALEQLGDSLEEIWGSAS 1367

[Close]

BLAST of ClCG06G009300 vs. Swiss-Prot
Match: YCF2_DAUCA (Protein Ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-08
Identity = 28/32 (87.50%), Postives = 27/32 (84.38%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSE NSFWLKNLFLVALEQLGDS+EEIWG  S
Sbjct: 1192 TSEPNSFWLKNLFLVALEQLGDSLEEIWGFAS 1223

[Close]

BLAST of ClCG06G009300 vs. Swiss-Prot
Match: YCF2_VITVI (Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 29/32 (90.62%), Postives = 28/32 (87.50%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEI GS S
Sbjct: 1399 TSELNSFWLKNLFLVALEQLGDSLEEIRGSAS 1430

[Close]

BLAST of ClCG06G009300 vs. Swiss-Prot
Match: YCF2_LIRTU (Protein Ycf2 OS=Liriodendron tulipifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 29/32 (90.62%), Postives = 28/32 (87.50%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEI GS S
Sbjct: 1400 TSELNSFWLKNLFLVALEQLGDSLEEIRGSAS 1431

[Close]

BLAST of ClCG06G009300 vs. TrEMBL
Match: A0A0A9RWP6_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 1   MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLPP 39
           MI+HS KELYKRHCPSSL RYC IGLSPIVQDSPLLPP
Sbjct: 98  MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 135

[Close]

BLAST of ClCG06G009300 vs. TrEMBL
Match: K4D8K8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-09
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 1  MISHSIKELYKRHCPSSLMRYCLIGLSPIVQDSPLLP 38
          MI+H +KELYKRHCPSSL RYC IGLSPIVQDSPLLP
Sbjct: 1  MIAHLMKELYKRHCPSSLTRYCWIGLSPIVQDSPLLP 37

[Close]

BLAST of ClCG06G009300 vs. TrEMBL
Match: A0A0D4WU35_9LILI (Protein Ycf2 OS=Campynema lineare GN=ycf2 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-08
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 107  FDQTSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            +  TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1375 YPTTSELNSFWLKNLFLVALEQLGDSLEEIWGSAS 1409

[Close]

BLAST of ClCG06G009300 vs. TrEMBL
Match: H2F5P1_9ASPA (Protein Ycf2 OS=Oziroe biflora GN=ycf2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1374 TSELNSFWLKNLFLVALEQLGDSLEEIWGSTS 1405

[Close]

BLAST of ClCG06G009300 vs. TrEMBL
Match: H2F5P2_IRITE (Protein Ycf2 OS=Iris tenax GN=ycf2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1393 TSELNSFWLKNLFLVALEQLGDSLEEIWGSAS 1424

[Close]

BLAST of ClCG06G009300 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 27/30 (90.00%), Postives = 26/30 (86.67%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGS 140
            TSELNSFWLKNLFLVALEQLGD +EEI GS
Sbjct: 1407 TSELNSFWLKNLFLVALEQLGDCLEEIRGS 1436

[Close]

BLAST of ClCG06G009300 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 27/30 (90.00%), Postives = 26/30 (86.67%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGS 140
            TSELNSFWLKNLFLVALEQLGD +EEI GS
Sbjct: 1407 TSELNSFWLKNLFLVALEQLGDCLEEIRGS 1436

[Close]

BLAST of ClCG06G009300 vs. NCBI nr
Match: gi|810852860|ref|YP_009130085.1| (hypothetical chloroplast RF21 (chloroplast) [Campynema lineare])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 107  FDQTSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            +  TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1375 YPTTSELNSFWLKNLFLVALEQLGDSLEEIWGSAS 1409

[Close]

BLAST of ClCG06G009300 vs. NCBI nr
Match: gi|523706731|gb|AGQ55715.1| (hypothetical chloroplast RF21 (chloroplast) [Alstroemeria aurea])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1385 TSELNSFWLKNLFLVALEQLGDSLEEIWGSAS 1416

[Close]

BLAST of ClCG06G009300 vs. NCBI nr
Match: gi|372480583|gb|AEX93974.1| (hypothetical chloroplast RF21 (chloroplast) [Oziroe biflora])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1374 TSELNSFWLKNLFLVALEQLGDSLEEIWGSTS 1405

[Close]

BLAST of ClCG06G009300 vs. NCBI nr
Match: gi|372480585|gb|AEX93975.1| (hypothetical chloroplast RF21 (chloroplast) [Iris tenax])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSELNSFWLKNLFLVALEQLGDS+EEIWGS S
Sbjct: 1393 TSELNSFWLKNLFLVALEQLGDSLEEIWGSAS 1424

[Close]

BLAST of ClCG06G009300 vs. NCBI nr
Match: gi|290489012|gb|ADD30890.1| (putative RF2 protein (chloroplast) [Berberidopsis corallina])

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 110  TSELNSFWLKNLFLVALEQLGDSVEEIWGSVS 142
            TSE NSFWLKNLFLVALEQLGDS+EEIWGSVS
Sbjct: 1397 TSEPNSFWLKNLFLVALEQLGDSLEEIWGSVS 1428

The following BLAST results are available for this feature:

BLAST of ClCG06G009300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_CUCSA	2.3e-08	87.50	Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1	[more]
YCF2_SILLA	2.3e-08	87.50	Protein Ycf2 OS=Silene latifolia GN=ycf2 PE=3 SV=1	[more]
YCF2_DAUCA	3.0e-08	87.50	Protein Ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1	[more]
YCF2_VITVI	4.0e-08	90.63	Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1	[more]
YCF2_LIRTU	4.0e-08	90.63	Protein Ycf2 OS=Liriodendron tulipifera GN=ycf2-A PE=3 SV=1	[more]

BLAST of ClCG06G009300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A9RWP6_ARUDO	7.8e-11	89.47	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
K4D8K8_SOLLC	1.5e-09	86.49	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0D4WU35_9LILI	8.0e-08	85.71	Protein Ycf2 OS=Campynema lineare GN=ycf2 PE=3 SV=1	[more]
H2F5P1_9ASPA	1.0e-07	93.75	Protein Ycf2 OS=Oziroe biflora GN=ycf2 PE=3 SV=1	[more]
H2F5P2_IRITE	1.0e-07	93.75	Protein Ycf2 OS=Iris tenax GN=ycf2 PE=3 SV=1	[more]

BLAST of ClCG06G009300 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	2.5e-08	90.00	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.5e-08	90.00	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of ClCG06G009300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|810852860\|ref\|YP_009130085.1\|	1.2e-07	85.71	hypothetical chloroplast RF21 (chloroplast) [Campynema lineare]	[more]
gi\|523706731\|gb\|AGQ55715.1\|	1.5e-07	93.75	hypothetical chloroplast RF21 (chloroplast) [Alstroemeria aurea]	[more]
gi\|372480583\|gb\|AEX93974.1\|	1.5e-07	93.75	hypothetical chloroplast RF21 (chloroplast) [Oziroe biflora]	[more]
gi\|372480585\|gb\|AEX93975.1\|	1.5e-07	93.75	hypothetical chloroplast RF21 (chloroplast) [Iris tenax]	[more]
gi\|290489012\|gb\|ADD30890.1\|	3.3e-07	93.75	putative RF2 protein (chloroplast) [Berberidopsis corallina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008543	Uncharacterised_Ycf2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009300.1	ClCG06G009300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 109..141 score: 4.4
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 110..142 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G009300	Cucumber (Chinese Long) v3	cucwcgB084
ClCG06G009300	Cucumber (Chinese Long) v3	cucwcgB091
ClCG06G009300	Watermelon (97103) v2	wcgwmbB273
ClCG06G009300	Wax gourd	wcgwgoB543
ClCG06G009300	Cucumber (Gy14) v1	cgywcgB507
ClCG06G009300	Cucurbita maxima (Rimu)	cmawcgB073
ClCG06G009300	Cucurbita maxima (Rimu)	cmawcgB137
ClCG06G009300	Cucurbita moschata (Rifu)	cmowcgB121
ClCG06G009300	Wild cucumber (PI 183967)	cpiwcgB080
ClCG06G009300	Wild cucumber (PI 183967)	cpiwcgB087
ClCG06G009300	Cucumber (Chinese Long) v2	cuwcgB079
ClCG06G009300	Cucumber (Chinese Long) v2	cuwcgB085
ClCG06G009300	Melon (DHL92) v3.5.1	mewcgB257
ClCG06G009300	Melon (DHL92) v3.5.1	mewcgB259
ClCG06G009300	Watermelon (97103) v1	wcgwmB344
ClCG06G009300	Cucurbita pepo (Zucchini)	cpewcgB620
ClCG06G009300	Bottle gourd (USVL1VR-Ls)	lsiwcgB376
ClCG06G009300	Bottle gourd (USVL1VR-Ls)	lsiwcgB377
ClCG06G009300	Cucumber (Gy14) v2	cgybwcgB074
ClCG06G009300	Cucumber (Gy14) v2	cgybwcgB081
ClCG06G009300	Melon (DHL92) v3.6.1	medwcgB250
ClCG06G009300	Silver-seed gourd	carwcgB0893