ClCG06G009270 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G009270
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRibosomal protein L5
LocationCG_Chr06 : 15520690 .. 15521367 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAACGTCTTTCAGTTCTTTGATCCATTTCGTGGTGCGAAATCCATCATTTGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAATCGAAGCTGTTGCATTGTTTGCTCCAATGATGACCTTTTTTTATCTCATTTGTATTCCAATAGGAAAAAAGAAAGAATTTTTCCGTTTCACTCAACCATCTTTTTGAAGCAAATAGTTCACAGTGCTCATTCTATAGATACTGTGTAAAAAAGCCAACTCATGTTTTCACTCGATTTTCATTATGAAGATGTATCACTTCAGGATCCATTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

mRNA sequence

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAACGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACTTCAGGATCCATTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

Coding sequence (CDS)

ATGACCCATACCAATCCTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACGAAGAGGATTCTCAGACTGGATTGAGCGGGAGGGAAGTTGCTGTCGATATTGGAAACGTCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACTTCAGGATCCATTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGATAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCATCAGGAAAGTCATTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAGCACTCTTCGAGGGCATGGAATGTAG

Protein sequence

MTHTNPTLLSPILFLSLLGNHEEDSQTGLSGREVAVDIGNVFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM
Homology
[Close]
BLAST of ClCG06G009270 vs. Swiss-Prot
Match: RM05_ARATH (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.3e-39
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DV  QD LLKLNYA VMEVPG CEIR +PKAPY+FIIKNGK AM+IP GQKFIQTQRG
Sbjct: 8   YEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. Swiss-Prot
Match: RM05_OENBE (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-35
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQ 107
           + DV  QD LLKLN A VMEVPG CEIR +PK  + YDFIIKNGK AM+I RGQKFIQT+
Sbjct: 8   YEDVLRQDLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRGQKFIQTE 67

Query: 108 RGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           RGS+GKSFRSNPFLESNKDKGYVSDLAR+S LRGHGM
Sbjct: 68  RGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGM 104

[Close]
BLAST of ClCG06G009270 vs. Swiss-Prot
Match: RM05_BRANA (60S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-35
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLL     T+ +  GSCEIR +P  PY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. Swiss-Prot
Match: RM05_SOLTU (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-26
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQ 100
           +F  +  + DV  QD LLKLNYA VMEVPG C+I  +PK AP    IKNGK AM+I  GQ
Sbjct: 5   MFPLYFHYEDVLRQDLLLKLNYANVMEVPGLCKIIVVPKTAP---SIKNGKLAMEISCGQ 64

Query: 101 KFIQTQRGSSGKSFRSNPFLESNKD-KGYVSDLARKSTLRGHGM 143
           K    QR S+GKSFRSNPFL SNKD KGYVSDLAR+STLRGHGM
Sbjct: 65  KL--KQRASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGM 103

[Close]
BLAST of ClCG06G009270 vs. Swiss-Prot
Match: RM05_MARPO (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-19
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-R 107
           +  V   D LLK+NY  +MEVP  C+I  +PKAP +F IKN K AM+I  GQKFIQT+ R
Sbjct: 13  YNQVIRPDLLLKINYENIMEVPRLCKIIVVPKAPSNF-IKNVKLAMEIVCGQKFIQTRSR 72

Query: 108 GSSGKSFRSNPFL---ESNKDKGYVSDLARKSTLRGHGM 143
           GS+GKSFR N F+   ES +D GYV+ LAR STLRGH M
Sbjct: 73  GSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIM 109

[Close]
BLAST of ClCG06G009270 vs. TrEMBL
Match: K7KH99_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. TrEMBL
Match: K7M8M6_SOYBN (Ribosomal protein subunit L5 OS=Glycine max GN=rp15 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. TrEMBL
Match: A0A0G3BEX2_9ROSI (Ribosomal protein L5 OS=Francoa sonchifolia GN=rpl5 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1 

Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. TrEMBL
Match: N0DKE4_PHAAN (Ribosomal protein L5 OS=Phaseolus angularis GN=rpl5 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.6e-40
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNK+KGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKEKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. TrEMBL
Match: E9KZM3_VIGRA (Ribosomal protein L5 OS=Vigna radiata GN=rpl5 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.9e-40
Identity = 82/95 (86.32%), Postives = 88/95 (92.63%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL S KDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSKKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. TAIR10
Match: AT2G07725.1 (AT2G07725.1 Ribosomal L5P family protein)

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-42
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLK N+A VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. TAIR10
Match: ATMG00210.1 (ATMG00210.1 ribosomal protein L5)

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-42
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLK N+A VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. NCBI nr
Match: gi|476507674|ref|YP_007516856.1| (ribosomal protein subunit L5 (mitochondrion) [Glycine max])

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. NCBI nr
Match: gi|825716735|gb|AKJ25869.1| (ribosomal protein L5 (mitochondrion) [Francoa sonchifolia])

HSP 1 Score: 172.6 bits (436), Expect = 5.1e-40
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1 

Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQTQRGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. NCBI nr
Match: gi|501595012|ref|YP_007889799.1| (ribosomal protein L5 (mitochondrion) [Vigna angularis])

HSP 1 Score: 172.2 bits (435), Expect = 6.6e-40
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL SNK+KGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSNKEKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. NCBI nr
Match: gi|1016880326|ref|YP_009243665.1| (ribosomal protein L5 (mitochondrion) [Cannabis sativa])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 82/102 (80.39%), Postives = 91/102 (89.22%), Query Frame = 1 

Query: 41  VFQFFDPFRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQK 100
           +F  +  + DVS QDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQK
Sbjct: 1   MFPLYFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK 60

Query: 101 FIQTQRGSSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           FIQT+RGS+GKSFRSNPFL SNKDKGYVSDLAR+STLRGHGM
Sbjct: 61  FIQTERGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGM 102

[Close]
BLAST of ClCG06G009270 vs. NCBI nr
Match: gi|323149053|ref|YP_004222816.1| (ribosomal protein L5 [Vigna radiata])

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 82/95 (86.32%), Postives = 88/95 (92.63%), Query Frame = 1 

Query: 48  FRDVSLQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRG 107
           + DVS QDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRG
Sbjct: 8   YEDVSRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRG 67

Query: 108 SSGKSFRSNPFLESNKDKGYVSDLARKSTLRGHGM 143
           S+GKSFRSNPFL S KDKGYVSDLAR+STLRGHGM
Sbjct: 68  STGKSFRSNPFLGSKKDKGYVSDLARQSTLRGHGM 102

The following BLAST results are available for this feature:
BLAST of ClCG06G009270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM05_ARATH4.3e-3983.1660S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=... [more]
RM05_OENBE2.2e-3578.3560S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=... [more]
RM05_BRANA6.4e-3575.7960S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2[more]
RM05_SOLTU7.1e-2666.3560S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2[more]
RM05_MARPO4.9e-1958.5960S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV... [more]
BLAST of ClCG06G009270 vs. TrEMBL
Match NameE-valueIdentityDescription
K7KH99_SOYBN1.6e-4087.37Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7M8M6_SOYBN1.6e-4087.37Ribosomal protein subunit L5 OS=Glycine max GN=rp15 PE=4 SV=1[more]
A0A0G3BEX2_9ROSI3.5e-4081.37Ribosomal protein L5 OS=Francoa sonchifolia GN=rpl5 PE=4 SV=1[more]
N0DKE4_PHAAN4.6e-4086.32Ribosomal protein L5 OS=Phaseolus angularis GN=rpl5 PE=4 SV=1[more]
E9KZM3_VIGRA7.9e-4086.32Ribosomal protein L5 OS=Vigna radiata GN=rpl5 PE=4 SV=1[more]
BLAST of ClCG06G009270 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07725.12.0e-4285.26 Ribosomal L5P family protein[more]
ATMG00210.12.0e-4285.26ATMG00210.1 ribosomal protein L5[more]
BLAST of ClCG06G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|476507674|ref|YP_007516856.1|2.3e-4087.37ribosomal protein subunit L5 (mitochondrion) [Glycine max][more]
gi|825716735|gb|AKJ25869.1|5.1e-4081.37ribosomal protein L5 (mitochondrion) [Francoa sonchifolia][more]
gi|501595012|ref|YP_007889799.1|6.6e-4086.32ribosomal protein L5 (mitochondrion) [Vigna angularis][more]
gi|1016880326|ref|YP_009243665.1|1.1e-3980.39ribosomal protein L5 (mitochondrion) [Cannabis sativa][more]
gi|323149053|ref|YP_004222816.1|1.1e-3986.32ribosomal protein L5 [Vigna radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022803Ribosomal_L5_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G009270.1ClCG06G009270.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022803Ribosomal protein L5 domainGENE3DG3DSA:3.30.1440.10coord: 48..142
score: 2.
IPR022803Ribosomal protein L5 domainunknownSSF55282RL5-likecoord: 46..142
score: 7.9
NoneNo IPR availablePANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 48..142
score: 1.1
NoneNo IPR availablePANTHERPTHR11994:SF11SUBFAMILY NOT NAMEDcoord: 48..142
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G009270Cla97C06G119050Watermelon (97103) v2wcgwmbB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G009270Silver-seed gourdcarwcgB0893
ClCG06G009270Cucumber (Chinese Long) v3cucwcgB084
ClCG06G009270Cucumber (Chinese Long) v3cucwcgB091
ClCG06G009270Wax gourdwcgwgoB543
ClCG06G009270Cucumber (Gy14) v1cgywcgB507
ClCG06G009270Cucurbita maxima (Rimu)cmawcgB073
ClCG06G009270Cucurbita maxima (Rimu)cmawcgB137
ClCG06G009270Cucurbita moschata (Rifu)cmowcgB121
ClCG06G009270Wild cucumber (PI 183967)cpiwcgB080
ClCG06G009270Wild cucumber (PI 183967)cpiwcgB087
ClCG06G009270Cucumber (Chinese Long) v2cuwcgB079
ClCG06G009270Cucumber (Chinese Long) v2cuwcgB085
ClCG06G009270Melon (DHL92) v3.5.1mewcgB257
ClCG06G009270Melon (DHL92) v3.5.1mewcgB259
ClCG06G009270Watermelon (97103) v1wcgwmB344
ClCG06G009270Cucurbita pepo (Zucchini)cpewcgB620
ClCG06G009270Bottle gourd (USVL1VR-Ls)lsiwcgB376
ClCG06G009270Bottle gourd (USVL1VR-Ls)lsiwcgB377
ClCG06G009270Cucumber (Gy14) v2cgybwcgB074
ClCG06G009270Cucumber (Gy14) v2cgybwcgB081
ClCG06G009270Melon (DHL92) v3.6.1medwcgB250