ClCG06G009160 (gene) Watermelon (Charleston Gray)

NameClCG06G009160
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPseudouridine synthase
LocationCG_Chr06 : 15009083 .. 15009885 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATGTTTTATTTATTTGTGTAGGAACAACGGGGTGGAGTTTGGAGCTTGTGCTGTATCTTTTTTTTTCCTTGTAGTAGCATTTTGCTTGTTCAACCCTGTTTTCTATTTGTTTTTACTAATCTTGATGTCTATTTGTTCAGGATTCAATTAGCTTAGTGGAGACTGTTCATAATGTAAAGTATGTTTAAACTCTCGTGAGATTAAGCCATCTTCTTCCCTTCCTATTTTCATTTTGTAGAATTTTGTAATTGTATAATCTTTACATTGTACTTTACGGTACATGTCCATAGGGAATTTTCGATTACCAATGTGACTGGCAGCTACCGGAGAGTTTTTCAAAGACCAAAGGACTATGAGTGGTACTCTCTTTAAGTTGTTAAATTATGAATTCCTAGCATTTATCTATTTGTTAGAAGATTAAATTCTGTTGTTTGGCAGGGAATTGATCTCATATGTTGATCGTAATTTACCCCTGGCTCAGAGCGATTTACATAACCTTTTAAAGTCTCAAAGTGTTGAAATTAGTAAGGAAGAAAAGATAGCCGATAAATCTAAAAATGAAGATCTATTGGATTCCACAGAAGAATCAGGGTGCTGTAAAAAGAATGTTCAACTTGAAGCAGGTGAAAATGAAAATGAAAACGAAAATGAAAGTGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCCGCGTCTTCTTATGCTACTATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCGTTTTGTCCCTTTTTCATTACTAG

mRNA sequence

ATGGATTCAATTAGCTTAGTGGAGACTGTTCATAATGTAAAGGAATTTTCGATTACCAATGTGACTGGCAGCTACCGGAGAGTTTTTCAAAGACCAAAGGACTATGAGTGGGAATTGATCTCATATGTTGATCGTAATTTACCCCTGGCTCAGAGCGATTTACATAACCTTTTAAAGTCTCAAAGTGTTGAAATTAGTAAGGAAGAAAAGATAGCCGATAAATCTAAAAATGAAGATCTATTGGATTCCACAGAAGAATCAGGGTGCTGTAAAAAGAATGTTCAACTTGAAGCAGGTGAAAATGAAAATGAAAACGAAAATGAAAGTGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCCGCGTCTTCTTATGCTACTATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCGTTTTGTCCCTTTTTCATTACTAG

Coding sequence (CDS)

ATGGATTCAATTAGCTTAGTGGAGACTGTTCATAATGTAAAGGAATTTTCGATTACCAATGTGACTGGCAGCTACCGGAGAGTTTTTCAAAGACCAAAGGACTATGAGTGGGAATTGATCTCATATGTTGATCGTAATTTACCCCTGGCTCAGAGCGATTTACATAACCTTTTAAAGTCTCAAAGTGTTGAAATTAGTAAGGAAGAAAAGATAGCCGATAAATCTAAAAATGAAGATCTATTGGATTCCACAGAAGAATCAGGGTGCTGTAAAAAGAATGTTCAACTTGAAGCAGGTGAAAATGAAAATGAAAACGAAAATGAAAGTGGGCAAGGCACTCAGGATCCTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCCGCGTCTTCTTATGCTACTATGGCAATTAGAGAATTGCTGAAAACATCAACTTCTGTGAGATCCGTTTTGTCCCTTTTTCATTACTAG

Protein sequence

MDSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQSVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALKLSFTLPASSYATMAIRELLKTSTSVRSVLSLFHY
BLAST of ClCG06G009160 vs. TrEMBL
Match: A0A0A0LYD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690350 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.9e-63
Identity = 128/144 (88.89%), Postives = 134/144 (93.06%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           DSISL  +VHNVKEFSIT++TGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ
Sbjct: 15  DSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 74

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALK 121
           SVEISKEEKIADKSKNED LDST++S CCKKN+QLEAG  ENEN    GQGTQDPQMALK
Sbjct: 75  SVEISKEEKIADKSKNEDSLDSTDQSVCCKKNIQLEAGGKENEN----GQGTQDPQMALK 134

Query: 122 LSFTLPASSYATMAIRELLKTSTS 146
           LSFTLPASSYATMAIRELLKTSTS
Sbjct: 135 LSFTLPASSYATMAIRELLKTSTS 154

BLAST of ClCG06G009160 vs. TrEMBL
Match: U5GGM8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05300g PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-35
Identity = 83/150 (55.33%), Postives = 106/150 (70.67%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           D+I+L E+VH VKEFSIT++TGSYRRVFQ+P D+EWEL++Y D N PLA++DL  + K+ 
Sbjct: 595 DAINLTESVHRVKEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETDLDKISKTG 654

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQL-----EAGENENENENESGQGTQDP 121
           S  I K+E+     ++ DL D T+   C + ++ L     E  E E E+E  SG   Q+ 
Sbjct: 655 STNIIKQEEQGKGDEDNDLSDCTKLPVCSRNSIALSSDTNEESEREVESEQVSGSNWQET 714

Query: 122 QMALKLSFTLPASSYATMAIRELLKTSTSV 147
           QMALKLS TLPAS YATMAIRELLKTSTSV
Sbjct: 715 QMALKLSLTLPASCYATMAIRELLKTSTSV 744

BLAST of ClCG06G009160 vs. TrEMBL
Match: W9QVC1_9ROSA (Multisubstrate pseudouridine synthase 7 OS=Morus notabilis GN=L484_006163 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           D+ISL E+ HNVKEFSIT++TGSYRRVFQ+P DYEWEL++Y +  +PLA++DL  + KS+
Sbjct: 592 DAISLTESAHNVKEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTIPLAETDLDIIAKSK 651

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENES--GQGTQDPQMA 121
              +++E ++    ++       E     + +     GE E E + ES  G  +Q+PQMA
Sbjct: 652 PAHVAEENEVNGNEESTKRSKRVENEAVLQTDDNKVDGEREAELQAESTCGTNSQEPQMA 711

Query: 122 LKLSFTLPASSYATMAIRELLKTSTSVR 148
           LKLSFTLPAS YATMAIRELLKTSTSVR
Sbjct: 712 LKLSFTLPASCYATMAIRELLKTSTSVR 739

BLAST of ClCG06G009160 vs. TrEMBL
Match: A0A067DBE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009530mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 78/154 (50.65%), Postives = 105/154 (68.18%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           D I+L E++HNVKEFSIT++TG+YRRVFQ+P D+EWEL++Y+D N PLA++DL  + K++
Sbjct: 372 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKAK 431

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENE---------NENENESGQG 121
            V I KEE+    +K +D  D  ++S    K+++L    NE            E+  G  
Sbjct: 432 LVNIVKEEEAVCGNKEKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 491

Query: 122 TQDPQMALKLSFTLPASSYATMAIRELLKTSTSV 147
           +Q  QMALKL  TLP+S YATMAIRELLKTSTSV
Sbjct: 492 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSV 525

BLAST of ClCG06G009160 vs. TrEMBL
Match: V4V316_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003382mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-32
Identity = 78/159 (49.06%), Postives = 104/159 (65.41%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           D I+L E++HNVKEFSIT++TG+YRRVFQ+P D+EWEL++Y+D N PLA++DL  + K +
Sbjct: 534 DGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDK 593

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENE---------NENENESGQG 121
              I KEE+    +K +D  D  ++S    K+++L    NE            E+  G  
Sbjct: 594 LANIVKEEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD 653

Query: 122 TQDPQMALKLSFTLPASSYATMAIRELLKTSTSVRSVLS 152
           +Q  QMALKL  TLP+S YATMAIRELLKTSTSV    S
Sbjct: 654 SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVSDFTS 692

BLAST of ClCG06G009160 vs. TAIR10
Match: AT3G04820.1 (AT3G04820.1 Pseudouridine synthase family protein)

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-32
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           D ISL E++H VKEFSIT++TG YRRVFQ+P D+EWEL++Y D N PLA++DL  +  ++
Sbjct: 568 DGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSNKPLAETDLDRIPMNK 627

Query: 62  SVE-ISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMAL 121
            VE +   E+I D+S   D   +  +SG      Q ++ E E +  N   + T   QMAL
Sbjct: 628 PVEKVGSTEEIEDESMKSD--TNPHDSGETNLKDQTDSNEAEKDTGNPDSEQT---QMAL 687

Query: 122 KLSFTLPASSYATMAIRELLKTSTSV 147
           K++ TLP+S YATMAIRELLKTSTSV
Sbjct: 688 KMALTLPSSCYATMAIRELLKTSTSV 708

BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|778664378|ref|XP_011660284.1| (PREDICTED: pseudouridylate synthase 7 homolog [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 9.4e-64
Identity = 129/145 (88.97%), Postives = 135/145 (93.10%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           DSISL  +VHNVKEFSIT++TGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ
Sbjct: 571 DSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 630

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALK 121
           SVEISKEEKIADKSKNED LDST++S CCKKN+QLEAG  ENEN    GQGTQDPQMALK
Sbjct: 631 SVEISKEEKIADKSKNEDSLDSTDQSVCCKKNIQLEAGGKENEN----GQGTQDPQMALK 690

Query: 122 LSFTLPASSYATMAIRELLKTSTSV 147
           LSFTLPASSYATMAIRELLKTSTSV
Sbjct: 691 LSFTLPASSYATMAIRELLKTSTSV 711

BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|700211702|gb|KGN66798.1| (hypothetical protein Csa_1G690350 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.7e-63
Identity = 128/144 (88.89%), Postives = 134/144 (93.06%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           DSISL  +VHNVKEFSIT++TGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ
Sbjct: 15  DSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 74

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALK 121
           SVEISKEEKIADKSKNED LDST++S CCKKN+QLEAG  ENEN    GQGTQDPQMALK
Sbjct: 75  SVEISKEEKIADKSKNEDSLDSTDQSVCCKKNIQLEAGGKENEN----GQGTQDPQMALK 134

Query: 122 LSFTLPASSYATMAIRELLKTSTS 146
           LSFTLPASSYATMAIRELLKTSTS
Sbjct: 135 LSFTLPASSYATMAIRELLKTSTS 154

BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|659125508|ref|XP_008462718.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 8.2e-60
Identity = 124/145 (85.52%), Postives = 132/145 (91.03%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           DSISL E+VHNVKEFSIT++TGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQ
Sbjct: 541 DSISLTESVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHKLLKSQ 600

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALK 121
           SVEISKEEKIA+KSK ED LDST++S CCKK++QLEAG     NE E GQGT DPQMALK
Sbjct: 601 SVEISKEEKIANKSKIEDSLDSTDQSVCCKKDIQLEAG----GNETEYGQGTPDPQMALK 660

Query: 122 LSFTLPASSYATMAIRELLKTSTSV 147
           LSFTLPASSYATMAIRELLKTSTSV
Sbjct: 661 LSFTLPASSYATMAIRELLKTSTSV 681

BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|659125504|ref|XP_008462716.1| (PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 8.2e-60
Identity = 124/145 (85.52%), Postives = 132/145 (91.03%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           DSISL E+VHNVKEFSIT++TGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLH LLKSQ
Sbjct: 571 DSISLTESVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHKLLKSQ 630

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQLEAGENENENENESGQGTQDPQMALK 121
           SVEISKEEKIA+KSK ED LDST++S CCKK++QLEAG     NE E GQGT DPQMALK
Sbjct: 631 SVEISKEEKIANKSKIEDSLDSTDQSVCCKKDIQLEAG----GNETEYGQGTPDPQMALK 690

Query: 122 LSFTLPASSYATMAIRELLKTSTSV 147
           LSFTLPASSYATMAIRELLKTSTSV
Sbjct: 691 LSFTLPASSYATMAIRELLKTSTSV 711

BLAST of ClCG06G009160 vs. NCBI nr
Match: gi|743866321|ref|XP_011032429.1| (PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Populus euphratica])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 1

Query: 2   DSISLVETVHNVKEFSITNVTGSYRRVFQRPKDYEWELISYVDRNLPLAQSDLHNLLKSQ 61
           D+I+L E+VH+VKEFSIT++TGSYRRVFQ+P D+EWEL++Y D N PLA++DL  + K+ 
Sbjct: 542 DAINLTESVHHVKEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETDLDKISKTG 601

Query: 62  SVEISKEEKIADKSKNEDLLDSTEESGCCKKNVQL-----EAGENENENENESGQGTQDP 121
           S  I K+E+     ++ DL D TE   C + ++ L     E  E E E+E  SG   Q+ 
Sbjct: 602 STNIIKQEEQGKGDEDNDLSDCTELPVCSRNSIALSSVTNEESEREVESEQVSGSNWQET 661

Query: 122 QMALKLSFTLPASSYATMAIRELLKTSTSV 147
           QMALKLS TLPAS YATMAIRELLKTSTSV
Sbjct: 662 QMALKLSLTLPASCYATMAIRELLKTSTSV 691

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LYD2_CUCSA1.9e-6388.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690350 PE=4 SV=1[more]
U5GGM8_POPTR2.9e-3555.33Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05300g PE=4 SV=1[more]
W9QVC1_9ROSA7.1e-3453.38Multisubstrate pseudouridine synthase 7 OS=Morus notabilis GN=L484_006163 PE=4 S... [more]
A0A067DBE6_CITSI1.0e-3250.65Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009530mg PE=4 SV=1[more]
V4V316_9ROSI3.0e-3249.06Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003382mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G04820.12.0e-3250.68 Pseudouridine synthase family protein[more]
Match NameE-valueIdentityDescription
gi|778664378|ref|XP_011660284.1|9.4e-6488.97PREDICTED: pseudouridylate synthase 7 homolog [Cucumis sativus][more]
gi|700211702|gb|KGN66798.1|2.7e-6388.89hypothetical protein Csa_1G690350 [Cucumis sativus][more]
gi|659125508|ref|XP_008462718.1|8.2e-6085.52PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo][more]
gi|659125504|ref|XP_008462716.1|8.2e-6085.52PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo][more]
gi|743866321|ref|XP_011032429.1|1.1e-3556.00PREDICTED: multisubstrate pseudouridine synthase 7 isoform X1 [Populus euphratic... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001656PsdUridine_synth_TruD
IPR020103PsdUridine_synth_cat_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G009160.1ClCG06G009160.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001656Pseudouridine synthase, TruDPANTHERPTHR13326TRNA PSEUDOURIDINE SYNTHASE Dcoord: 2..76
score: 4.6E-36coord: 114..146
score: 4.6
IPR020103Pseudouridine synthase, catalytic domainunknownSSF55120Pseudouridine synthasecoord: 119..142
score: 5.04E-11coord: 16..43
score: 5.04
NoneNo IPR availablePANTHERPTHR13326:SF8SUBFAMILY NOT NAMEDcoord: 2..76
score: 4.6E-36coord: 114..146
score: 4.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G009160Csa1G690350Cucumber (Chinese Long) v2cuwcgB085
The following gene(s) are paralogous to this gene:

None