ClCG06G009110 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G009110
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 14730728 .. 14730955 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAAGAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCGTCCAAGAAAGCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGGACGATGA

mRNA sequence

ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAAGAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCGTCCAAGAAAGCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGGACGATGA

Coding sequence (CDS)

ATGGCAACCGAGGAAGCTAGAAGGTCATCGGTAGAGCGAGTACAAGTTGAAGGACTAGTGACCCAAGGTAGGCGGCGAGATGATGCTCGTTTGTCCAGCTTAGAAGAAGGACAGGAAAATGTGCAACTTGCCGTTGGTCGATTGAGTGAAAAATATGAAGAGCTCGTCCAAGAAAGCTCGGAGATCACGGCAGTTGCCAAAAGAATGATCATGGAGCTTGGACGATGA

Protein sequence

MATEEARRSSVERVQVEGLVTQGRRRDDARLSSLEEGQENVQLAVGRLSEKYEELVQESSEITAVAKRMIMELGR

Homology

[Close]

BLAST of ClCG06G009110 vs. NCBI nr
Match: gi|659068885|ref|XP_008446938.1| (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 1  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
          M+ EE   S VE+V +EG VT+GR+                    D RL++LE+G E+VQ
Sbjct: 1  MSAEEGHTSPVEQV-IEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61 LAVGRLSEKYEELVQESSEITAVAKRMIMELGR 76
          LAVGRLSE +EELV E++EIT+VAK MI ++GR
Sbjct: 61 LAVGRLSENFEELVLENAEITSVAKEMIEDMGR 92

[Close]

BLAST of ClCG06G009110 vs. NCBI nr
Match: gi|659083321|ref|XP_008442289.1| (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 1


Query: 1  MATEEARRSSVERVQVEGLVTQGRRRD------------------DARLSSLEEGQENVQ 60
          M+ EE   S VE+V +EG VT+GR+                    + RL++LE+G E+VQ
Sbjct: 1  MSAEEGHTSPVEQV-IEGPVTRGRKEQHSSTRRSKSKGPAVREHVNTRLTNLEQGMEDVQ 60

Query: 61 LAVGRLSEKYEELVQESSEITAVAKRMIMELGR 76
          LAVGRLS+ +EELVQE++EIT+VAK MI ++GR
Sbjct: 61 LAVGRLSDNFEELVQENAEITSVAKEMIEDMGR 92

The following BLAST results are available for this feature:

BLAST of ClCG06G009110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068885\|ref\|XP_008446938.1\|	2.6e-11	48.39	PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]	[more]
gi\|659083321\|ref\|XP_008442289.1\|	3.4e-11	47.31	PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009110.1	ClCG06G009110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G009110	Cucumber (Gy14) v1	cgywcgB572
ClCG06G009110	Cucurbita maxima (Rimu)	cmawcgB073
ClCG06G009110	Cucurbita maxima (Rimu)	cmawcgB137
ClCG06G009110	Cucurbita moschata (Rifu)	cmowcgB121
ClCG06G009110	Wild cucumber (PI 183967)	cpiwcgB087
ClCG06G009110	Cucumber (Chinese Long) v2	cuwcgB085
ClCG06G009110	Melon (DHL92) v3.5.1	mewcgB259
ClCG06G009110	Watermelon (97103) v1	wcgwmB344
ClCG06G009110	Watermelon (97103) v1	wcgwmB350
ClCG06G009110	Cucurbita pepo (Zucchini)	cpewcgB620
ClCG06G009110	Bottle gourd (USVL1VR-Ls)	lsiwcgB377
ClCG06G009110	Cucumber (Gy14) v2	cgybwcgB081
ClCG06G009110	Melon (DHL92) v3.6.1	medwcgB250
ClCG06G009110	Silver-seed gourd	carwcgB0893
ClCG06G009110	Cucumber (Chinese Long) v3	cucwcgB091
ClCG06G009110	Watermelon (97103) v2	wcgwmbB273
ClCG06G009110	Wax gourd	wcgwgoB543
ClCG06G009110	Wax gourd	wcgwgoB553