ClCG06G009070 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G009070
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description40S ribosomal protein S24
LocationCG_Chr06 : 14280078 .. 14281322 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTGAAGGCAGAGCTGAAGGAAAAGGTAGCAAAAATATATGATGCGAGGGATGCAAGTGCAATTTTTATCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATGAACTGGGTTTGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCTCAAGTACAGGCCCATCAGGGTAATTTCTTTTCGTTAATAATATTTTATATTTCCATCTTGTCAGTTGTGATTTGGTAGATCTTGACAATGTTATGAATTGATTTTGTACATAAAGGGAAGAATCCTGTTATTGATCCATCATTCATGTTTATCCTATGATGGGTGAATGCGTCATTTACACCACTCCCTTTTGTTCCGTTGTAGGCTTTTGCCCGCACACATGCCTGCATACATAATATTTGGTAAAATATTCTAATCAGCACTGTTGTTAACTAATGGATTCAATATTACTAGTTTAAAAAGTATGGACACTGCTTTGAGCACTGTGTATTGAACATGCGTGGTGTACACATGTTGAGTTCTGATTTGGCAGGGGACAAATAAATGCAGGGGTGGGGGCTGGGGGGGAATGTTAGGATGCAATTGGTTCATATGGAGGACTTGCGTAGAGAATGAAGTAACAAGACTTAAATTGATAATTCTTTTATGAATAGAGGAATATGGCATCATTTGACTTGGAGAGATAAAAGGAGATAGAACCCTACCGAAACTAAGCAAAATGGGGGTAGGGGTGGACTTTTCGGTTTCACTTGAATATATCAAAAGGAGTGATGTGGGAAAATATAATGTTTGAGATGCAGGTTCCTTTGTTTGAAATATTTGGGGGATACTTGACTTCAATTTGCTGTTGCAAGACGTTTACTCTTTATAAGAGTCATATTTGATAAAAGGCCAAGAATCATTATATCTTTGCAATTTTGGTTCACTATTTTATTTTTCAAAATAGTTTTTCTGTCTGGATGCAAAAGAGTTGGGTTATTTCTGAAATTAAGTGTTATCTTCTTTACAGAATGGACTTGACACTAAAGTAGAAAAATCAAGGAAGTAAACTGCAATTCAAGTGAAGAGGAGGAAGAACAGAGCCAAGAAGATTCGCGGAGTAAAGAAAGTGAGTGAACCCTTCTTTTTCTTGTTTGAGTTTCTAATTTTGAAAATAACACTGTTTAATATTGGCTGCAATTTCCCTTTTTCTTTTACCAGACAGGCCTTAGATGCTGCCAAGGCTGGAAGGAAGAAATGA

mRNA sequence

ATGGACTTGAAGGCAGAGCTGAAGGAAAAGGTAGCAAAAATATATGATGCGAGGGATGCAAGTGCAATTTTTATCTTTAAGTTCCGAACTCACTTTGGAGTGAAGAGGAGGAAGAACAGAGCCAAGAAGATTCGCGGAGTAAAGAAAGCCTTAGATGCTGCCAAGGCTGGAAGGAAGAAATGA

Coding sequence (CDS)

ATGGACTTGAAGGCAGAGCTGAAGGAAAAGGTAGCAAAAATATATGATGCGAGGGATGCAAGTGCAATTTTTATCTTTAAGTTCCGAACTCACTTTGGAGTGAAGAGGAGGAAGAACAGAGCCAAGAAGATTCGCGGAGTAAAGAAAGCCTTAGATGCTGCCAAGGCTGGAAGGAAGAAATGA

Protein sequence

MDLKAELKEKVAKIYDARDASAIFIFKFRTHFGVKRRKNRAKKIRGVKKALDAAKAGRKK
Homology
[Close]
BLAST of ClCG06G009070 vs. Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.7e-09
Identity = 39/98 (39.80%), Postives = 45/98 (45.92%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A++Y+ +D +AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-08
Identity = 39/98 (39.80%), Postives = 44/98 (44.90%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A++Y+ +D +AIF FKFRTHFG                              
Sbjct: 38  KAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. TrEMBL
Match: A0A0B2RMA8_GLYSO (40S ribosomal protein S24-2 OS=Glycine soja GN=glysoja_050170 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-11
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 2   DLKAELKEKVAKIYDARDASAIFIFKFRTHFG--------------VKRRKNRAKKIRGV 61
           D KAELKEK+ ++YD +D + +F FKFRTHFG              +K RKNRAKKIRGV
Sbjct: 36  DSKAELKEKLRRMYDEKDTNPVFAFKFRTHFGGGKSTGFGEKSRKQMKERKNRAKKIRGV 95

[Close]
BLAST of ClCG06G009070 vs. TrEMBL
Match: A0A0A0LYE3_CUCSA (40S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-10
Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A+IYD +DA+AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. TrEMBL
Match: I1MV68_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-10
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 1 

Query: 2   DLKAELKEKVAKIYDARDASAIFIFKFRTHFG-------------------VKRRKNRAK 61
           D KAELKEK+ ++YD +D + +F FKFRTHFG                   +K RKNRAK
Sbjct: 36  DSKAELKEKLRRMYDEKDTNPVFAFKFRTHFGGGKSTGFGLSGKEEKSRKQMKERKNRAK 95

[Close]
BLAST of ClCG06G009070 vs. TrEMBL
Match: E5GBS0_CUCME (40S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-10
Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A+IYD +D +AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. TrEMBL
Match: I3T0W4_LOTJA (40S ribosomal protein S24 OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.0e-10
Identity = 43/100 (43.00%), Postives = 52/100 (52.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A++YD +D + +F+FKFRTHFG                              
Sbjct: 38  KAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. TAIR10
Match: AT3G04920.1 (AT3G04920.1 Ribosomal protein S24e family protein)

HSP 1 Score: 60.1 bits (144), Expect = 5.5e-10
Identity = 39/98 (39.80%), Postives = 45/98 (45.92%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A++Y+ +D +AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. TAIR10
Match: AT5G28060.1 (AT5G28060.1 Ribosomal protein S24e family protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-09
Identity = 39/98 (39.80%), Postives = 44/98 (44.90%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A++Y+ +D +AIF FKFRTHFG                              
Sbjct: 38  KAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. NCBI nr
Match: gi|734405170|gb|KHN33203.1| (40S ribosomal protein S24-2 [Glycine soja])

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-11
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 2   DLKAELKEKVAKIYDARDASAIFIFKFRTHFG--------------VKRRKNRAKKIRGV 61
           D KAELKEK+ ++YD +D + +F FKFRTHFG              +K RKNRAKKIRGV
Sbjct: 36  DSKAELKEKLRRMYDEKDTNPVFAFKFRTHFGGGKSTGFGEKSRKQMKERKNRAKKIRGV 95

[Close]
BLAST of ClCG06G009070 vs. NCBI nr
Match: gi|659125520|ref|XP_008462725.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-11
Identity = 47/100 (47.00%), Postives = 54/100 (54.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A+IYD +DA+AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. NCBI nr
Match: gi|449449533|ref|XP_004142519.1| (PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-10
Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A+IYD +DA+AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. NCBI nr
Match: gi|659070580|ref|XP_008455742.1| (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 46/100 (46.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A+IYD +D +AIF+FKFRTHFG                              
Sbjct: 38  KAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNG 97

[Close]
BLAST of ClCG06G009070 vs. NCBI nr
Match: gi|951040182|ref|XP_014517605.1| (PREDICTED: 40S ribosomal protein S24-1-like [Vigna radiata var. radiata])

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 4   KAELKEKVAKIYDARDASAIFIFKFRTHFG------------------------------ 61
           KAELKEK+A++YD +DA+ +F+FKFRTHFG                              
Sbjct: 38  KAELKEKLARMYDVKDANTVFVFKFRTHFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNG 97

The following BLAST results are available for this feature:
BLAST of ClCG06G009070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS241_ARATH9.7e-0939.8040S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1[more]
RS242_ARATH2.8e-0839.8040S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2[more]
BLAST of ClCG06G009070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2RMA8_GLYSO4.2e-1154.6740S ribosomal protein S24-2 OS=Glycine soja GN=glysoja_050170 PE=4 SV=1[more]
A0A0A0LYE3_CUCSA1.2e-1046.0040S ribosomal protein S24 OS=Cucumis sativus GN=Csa_1G696420 PE=3 SV=1[more]
I1MV68_SOYBN1.6e-1051.25Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
E5GBS0_CUCME1.6e-1046.0040S ribosomal protein S24 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
I3T0W4_LOTJA8.0e-1043.0040S ribosomal protein S24 OS=Lotus japonicus PE=2 SV=1[more]
BLAST of ClCG06G009070 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04920.15.5e-1039.80 Ribosomal protein S24e family protein[more]
AT5G28060.11.6e-0939.80 Ribosomal protein S24e family protein[more]
BLAST of ClCG06G009070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734405170|gb|KHN33203.1|6.1e-1154.6740S ribosomal protein S24-2 [Glycine soja][more]
gi|659125520|ref|XP_008462725.1|6.1e-1147.00PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo][more]
gi|449449533|ref|XP_004142519.1|1.8e-1046.00PREDICTED: 40S ribosomal protein S24-1-like [Cucumis sativus][more]
gi|659070580|ref|XP_008455742.1|2.3e-1046.00PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo][more]
gi|951040182|ref|XP_014517605.1|5.2e-1044.00PREDICTED: 40S ribosomal protein S24-1-like [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001976Ribosomal_S24e
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_L23/L15e_core_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G009070.1ClCG06G009070.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001976Ribosomal protein S24ePRODOMPD006052coord: 4..33
score: 2.
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 4..33
score: 9.5
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 4..41
score: 2.
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 4..41
score: 2.
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 4..41
score: 8.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G009070Cucumber (Chinese Long) v3cucwcgB091
ClCG06G009070Watermelon (97103) v2wcgwmbB273
ClCG06G009070Wax gourdwcgwgoB543
ClCG06G009070Wax gourdwcgwgoB553
ClCG06G009070Cucumber (Gy14) v1cgywcgB572
ClCG06G009070Cucurbita maxima (Rimu)cmawcgB073
ClCG06G009070Cucurbita maxima (Rimu)cmawcgB137
ClCG06G009070Cucurbita moschata (Rifu)cmowcgB121
ClCG06G009070Wild cucumber (PI 183967)cpiwcgB087
ClCG06G009070Cucumber (Chinese Long) v2cuwcgB085
ClCG06G009070Melon (DHL92) v3.5.1mewcgB259
ClCG06G009070Watermelon (97103) v1wcgwmB344
ClCG06G009070Watermelon (97103) v1wcgwmB350
ClCG06G009070Cucurbita pepo (Zucchini)cpewcgB620
ClCG06G009070Bottle gourd (USVL1VR-Ls)lsiwcgB377
ClCG06G009070Cucumber (Gy14) v2cgybwcgB081
ClCG06G009070Melon (DHL92) v3.6.1medwcgB250
ClCG06G009070Silver-seed gourdcarwcgB0893