ClCG06G009010 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G009010
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 13910651 .. 13911259 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGGTGAGCCACTATCATACAGAGATCACCTTGGTTATATCCTAGACGGATTAGAAAATGAGTATAATCTGTTTGTTACATCTATTCAGAATCATACTGATTGACCTTTGCTTGCAGATGTCTGCAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAACGATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAACCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTACCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA

mRNA sequence

ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGATGTCTGCAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAACGATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAACCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTACCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA

Coding sequence (CDS)

ATGGGACTTGGTTCTCAACTACAAAAAATTAAGAAGGATGGTTTGACTGTTTCTCAACATCTTGCTCAAATAAAGGATGCATCTGATAAGTTTTCAGCCATTGATGTCTGCAGTTTATTACTTGCTTACGAAGCACGATTGGAGAAGCAAATTGCAGTTGATAAGCTTAATCTTGTACAAGTTAATGTTGCACAGATGACCTTAAATCAGAATCCAAAACGATTGAATTGGCATTCAAATGGTAAATCTTCTAGCTCTAAGTTTTCGATGCTGCCAAATTCGAATCCTAGAATCTTTAATCCACCTAATTCTAGCCCACCCTTTAATCAACCTAGACCAAACTTCCGCCCAAATTCCCGCCCTGATAGACCTCAATATCAAATTTGTACAAAATTTGGACACATCGCCCTCGTTTGCCACAATCGCCATAATCCATTCTACCAAGTTGCTCCCCAGTCATCCTCTGTTGTTAGGCCACAAGCTCACCTTAATTAA

Protein sequence

MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAIDVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPPFNQPRPNFRPNSRPDRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSSVVRPQAHLN

Homology

[Close]

BLAST of ClCG06G009010 vs. TrEMBL
Match: A5BPS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013628 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 66/209 (31.58%), Postives = 88/209 (42.11%), Query Frame = 1


Query: 9   KIKKDGLTVSQHLAQIKDASDKFSAI---------------------------------- 68
           KIKK+G+T+S++LA+IK+  DK+SA+                                  
Sbjct: 75  KIKKEGITISEYLARIKEVFDKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNRSDK 134

Query: 69  ----DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMT------LNQNPKRLNWHSNGKSS 128
               +V SLL  Y   LE++    +L   QVN+   +       NQ P    +  N  SS
Sbjct: 135 SSLKEVHSLLYTYAYWLEQRNTAQQLQFSQVNLTAYSGQNKFHKNQQPNFPKYPQNSYSS 194

Query: 129 SSKF------SMLPNSNPRIFNPPNSSPPFN------QPRPNFRPNSRPDRPQYQICTKF 161
                     S  PNS P I   P   P  +      Q   NF P     RPQ QIC KF
Sbjct: 195 FPNKPINLYQSFRPNSQPSILGKPQGQPQSSSKWFQKQGTGNFGP-----RPQCQICGKF 254

[Close]

BLAST of ClCG06G009010 vs. TrEMBL
Match: A5BSK1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001716 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 1


Query: 1   MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAID-------------VCSLLLAYEARL 60
           M L  +LQ  KK  L++  ++ ++K A+D  +AI              V S+ LA+E RL
Sbjct: 137 MQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPXXEQDQISIEAVHSMXLAFEHRL 196

Query: 61  EKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPP 120
           E+Q ++++ + +  N A  + ++   R      G++ +      PN +   +        
Sbjct: 197 EQQSSIEQFSXISANYASSSNSRGGGRRYNGGRGQNHT------PNISNYTYRGRGRGGR 256

Query: 121 FNQPRPNFRPNSRP-DRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSS 156
           + Q   N R NS   ++PQ Q+C KFGH   +C++R +  YQ +  S++
Sbjct: 257 YGQ---NGRHNSNSSEKPQCQLCGKFGHTVQICYHRFDISYQSSXSSNT 296

[Close]

BLAST of ClCG06G009010 vs. TrEMBL
Match: A5BWU6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010428 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 1


Query: 21  LAQIKDASDKFSAIDVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRL----- 80
           +  I++ SD+ +   + SLLL+Y+  LE+Q ++  L+  QV++A   LN+ P +      
Sbjct: 88  VTSIQNRSDQPTIEQIHSLLLSYDFHLEQQNSIS-LHYAQVHMAY--LNKKPYKSTPQPT 147

Query: 81  --NWHSNGKSSSSKFSMLPNSNP-RIFNPPNSSPPFNQPRPNFRPNS--RPDRPQYQICT 140
             + H   K SS  F    +     I   P   P   QP+P ++P+   +  +PQ QIC 
Sbjct: 148 FNHIHIQPKHSSPPFKPTTSQYQLNILGKPQPQP--RQPQPQWKPHFSIQNQKPQCQICG 207

Query: 141 KFGHIALVCHNRHNPFYQVAP 152
           KFGHIAL+C +  N  Y   P
Sbjct: 208 KFGHIALICFHXTNLNYSPQP 223

[Close]

BLAST of ClCG06G009010 vs. NCBI nr
Match: gi|147802354|emb|CAN77126.1| (hypothetical protein VITISV_013628 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 66/209 (31.58%), Postives = 88/209 (42.11%), Query Frame = 1


Query: 9   KIKKDGLTVSQHLAQIKDASDKFSAI---------------------------------- 68
           KIKK+G+T+S++LA+IK+  DK+SA+                                  
Sbjct: 75  KIKKEGITISEYLARIKEVFDKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNRSDK 134

Query: 69  ----DVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMT------LNQNPKRLNWHSNGKSS 128
               +V SLL  Y   LE++    +L   QVN+   +       NQ P    +  N  SS
Sbjct: 135 SSLKEVHSLLYTYAYWLEQRNTAQQLQFSQVNLTAYSGQNKFHKNQQPNFPKYPQNSYSS 194

Query: 129 SSKF------SMLPNSNPRIFNPPNSSPPFN------QPRPNFRPNSRPDRPQYQICTKF 161
                     S  PNS P I   P   P  +      Q   NF P     RPQ QIC KF
Sbjct: 195 FPNKPINLYQSFRPNSQPSILGKPQGQPQSSSKWFQKQGTGNFGP-----RPQCQICGKF 254

[Close]

BLAST of ClCG06G009010 vs. NCBI nr
Match: gi|147798929|emb|CAN65942.1| (hypothetical protein VITISV_001716 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 45/169 (26.63%), Postives = 82/169 (48.52%), Query Frame = 1


Query: 1   MGLGSQLQKIKKDGLTVSQHLAQIKDASDKFSAID-------------VCSLLLAYEARL 60
           M L  +LQ  KK  L++  ++ ++K A+D  +AI              V S+ LA+E RL
Sbjct: 137 MQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPXXEQDQISIEAVHSMXLAFEHRL 196

Query: 61  EKQIAVDKLNLVQVNVAQMTLNQNPKRLNWHSNGKSSSSKFSMLPNSNPRIFNPPNSSPP 120
           E+Q ++++ + +  N A  + ++   R      G++ +      PN +   +        
Sbjct: 197 EQQSSIEQFSXISANYASSSNSRGGGRRYNGGRGQNHT------PNISNYTYRGRGRGGR 256

Query: 121 FNQPRPNFRPNSRP-DRPQYQICTKFGHIALVCHNRHNPFYQVAPQSSS 156
           + Q   N R NS   ++PQ Q+C KFGH   +C++R +  YQ +  S++
Sbjct: 257 YGQ---NGRHNSNSSEKPQCQLCGKFGHTVQICYHRFDISYQSSXSSNT 296

[Close]

BLAST of ClCG06G009010 vs. NCBI nr
Match: gi|147865501|emb|CAN79393.1| (hypothetical protein VITISV_010428 [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 1


Query: 21  LAQIKDASDKFSAIDVCSLLLAYEARLEKQIAVDKLNLVQVNVAQMTLNQNPKRL----- 80
           +  I++ SD+ +   + SLLL+Y+  LE+Q ++  L+  QV++A   LN+ P +      
Sbjct: 88  VTSIQNRSDQPTIEQIHSLLLSYDFHLEQQNSIS-LHYAQVHMAY--LNKKPYKSTPQPT 147

Query: 81  --NWHSNGKSSSSKFSMLPNSNP-RIFNPPNSSPPFNQPRPNFRPNS--RPDRPQYQICT 140
             + H   K SS  F    +     I   P   P   QP+P ++P+   +  +PQ QIC 
Sbjct: 148 FNHIHIQPKHSSPPFKPTTSQYQLNILGKPQPQP--RQPQPQWKPHFSIQNQKPQCQICG 207

Query: 141 KFGHIALVCHNRHNPFYQVAP 152
           KFGHIAL+C +  N  Y   P
Sbjct: 208 KFGHIALICFHXTNLNYSPQP 223

The following BLAST results are available for this feature:

BLAST of ClCG06G009010 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BPS3_VITVI	9.8e-10	31.58	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013628 PE=4 SV=1	[more]
A5BSK1_VITVI	7.8e-07	26.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001716 PE=4 SV=1	[more]
A5BWU6_VITVI	3.0e-06	32.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010428 PE=4 SV=1	[more]

BLAST of ClCG06G009010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147802354\|emb\|CAN77126.1\|	1.4e-09	31.58	hypothetical protein VITISV_013628 [Vitis vinifera]	[more]
gi\|147798929\|emb\|CAN65942.1\|	1.1e-06	26.63	hypothetical protein VITISV_001716 [Vitis vinifera]	[more]
gi\|147865501\|emb\|CAN79393.1\|	4.2e-06	32.62	hypothetical protein VITISV_010428 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G009010.1	ClCG06G009010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G009010	Wax gourd	wcgwgoB543
ClCG06G009010	Cucumber (Gy14) v1	cgywcgB572
ClCG06G009010	Cucurbita maxima (Rimu)	cmawcgB070
ClCG06G009010	Cucurbita maxima (Rimu)	cmawcgB128
ClCG06G009010	Cucurbita moschata (Rifu)	cmowcgB063
ClCG06G009010	Cucurbita moschata (Rifu)	cmowcgB114
ClCG06G009010	Wild cucumber (PI 183967)	cpiwcgB087
ClCG06G009010	Cucumber (Chinese Long) v2	cuwcgB085
ClCG06G009010	Melon (DHL92) v3.5.1	mewcgB259
ClCG06G009010	Watermelon (97103) v1	wcgwmB344
ClCG06G009010	Cucurbita pepo (Zucchini)	cpewcgB338
ClCG06G009010	Cucurbita pepo (Zucchini)	cpewcgB617
ClCG06G009010	Bottle gourd (USVL1VR-Ls)	lsiwcgB377
ClCG06G009010	Melon (DHL92) v3.6.1	medwcgB250
ClCG06G009010	Silver-seed gourd	carwcgB0040
ClCG06G009010	Silver-seed gourd	carwcgB0126
ClCG06G009010	Cucumber (Chinese Long) v3	cucwcgB091
ClCG06G009010	Watermelon (97103) v2	wcgwmbB273