ClCG06G008920 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G008920
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionApocytochrome f
LocationCG_Chr06 : 13603322 .. 13609033 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGTAAATAAGTAACTAACAATGAAACAAATTTGTACTGATTTTCTTTCAAAATCAAGATATATTAGAAGCAAGACATGAGCTTACTTCTTCTTCCCATGACTTCCTGTGAGCTGGAGATGGAGGCACTCAAACTTGCCCATTCTCTAGGGAACTTTAGATAGCCCAGAGACGTGCCCTTGACAAATCTTGCGTTGCCCGGTTGTTTCTATTCCAGCCAAATGTAGGGGAAGACTCTGATCCTGTCACCTCCACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAGTAAAAATCTAACCAAATAAAACAAATATCTATTGAACTAAATGTAAGAAACTACAATAACTAACGATTTTCTAAAACTTCAACTTAAACTGGAAAAAGTTAAGGAAAGTCCTTATACATTGGTTAGCCCATTAATATGCACCACGAGAATAGTGATATCATCTGTTCGAGTCTCAAATTGAAGCCAAAGTCTGTAAGACTTAACCACAATTGCAGCACAAGCATCACGCGAATCTTTATATTTAGTAACCTGGAAGATGATCGCAATTAAAGGAGCATTAGGGGGAAAACATGAAAGAGATTCCACATTATGTAGAAGGAAGCTTTATCATTCACTAATTCCTTAAGCAGTAATCAATCAAGAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAACTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGTGTAACAACAACTCCAGTAGTCTCAGCAATTGAGTCACCAATACTTCTTGTGAAAGTAGTGCTAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCCTTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAAACGAAGTTTGGTAGATCGAGAGGTCAACAGCCACAACTTCTTTCCCTTTCTACTCTGCTATAACAACTCTTGAATCACCTGAATTAGCAACATATATAGTCCTACCTCTAACTAAGACAGTAATAGCGCTAGTACCACTCATGCTATCATCCTAGATATCAGCATGTAACTGTGAATTAGTTGTTAAGATATTTAATTGGTCTAAATGTGTATGAAAATTTGGACAAGCATCTTATAGAATATCTTGATAATGAATGACATTTATATGAGAATTCAAAAGGATTTAAGATACCTGAAATATATAAATTAAGTTTTCGACAACTATATTCAATAAAGCTATAGAAATCATTATATAGATTGAAATAATCAGAACAAATGTGGTATAGTCGCCTGAGTGGATATTTGTTAAAAGAAGGATATCAAAATAATCCAATATATTCATGTGTTTTTATAAAGAAATCACAATCAGGATTTGCTATTATAACTGTATATGTCGATTACCTAAATATACTTGGAACTCCTGAAGAGCTTTCGAAGGCAATAGAATATCTTAAGAAAGAATTTGAGATGAAAGATCTTGGAACAACAAAATTTTGCCTTGGATTACAAATTGAGCATTTAGCAAATGAGATATTTGTTCATCAGTCAACTTATACAGGAAAATTTTAAAAAAGATTCTATATGAACAAAGCACATCCATTAGACATTCCAATAGAAGTTCGTTCACTAGATGTAATGAAAGATATATTTCAACCTCAAGATAATAATGAATAACTTCTTGGTCCTGAAGTACCATGTCTTAGTGCAATTGGTGCACTTATGTATGTTGCTAAGAATACAAGACCAGATATTGCATTTTCAGTAAATTTATTAGCTAGATACAATTCTTTTCTAGCAAAAATACATTGGAATGGAATTAAGTATATACTTCGTTATCTCCGAGGAACGATCTATATGAGTTTTTTTTTATTCAAATAAATCAAAATTTGATTTAGTTCGTTATGTAGATTATGGATATTTATCTGATCCACACAAAGTTAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTACTATATCTTGGCGATCAGTGAAATAGACCATAACAGCTACTTCCTCAAATCATGCTGAAATTCTTGCAATCCATGAAACTAGTAGAGAATGTGTATGACTAAGATCAATGACTCAACACATTCGTGAAACATATGGTTTGTCTTCTAGTAAAAATCCTCCAACAACATTATATGAAGACAACATAGCATGTATAGCCCAAATGAAAGGATGATATATTAAAGGAGATAGAGCAAAACATATTTCACAAAAGCTTTTATACACTCATGATCTTGAAGAAAATGTCGATACCATTGTACAACAAATTTGTTCAAAGGATAACTTGGCAGACTTATTTACAAAATCATTACCAATCGCAATCTTTGAAAAATTGGTGCAGAACATTGGAATGTGGTGACTTAGAGATCTCAAGTGATGTTTCTATTAGGGGAACAAATGTATTGTATTCTTTTAGAAGTATTAGATTATATGAAATATGTACTTTTTTTTACTTCCCTAGGATTTTTTCCCATTAGGGATTTTCCTAGTAAGGTTACGAGGCATATTTCATATATATAATGGGCATCTAAGGGGAAGTATTATGAATATTATAACAAAATAGATGTTCATTATATAACCAAGCTTAGTGTCTAAAGATGTCAAGTATTAATGTCTCACAATGACACATCCTTAGTGGCCATGAAATTTCACCACTTACTTGCCAAATTGCCTATAAATAGTGACATTTGGTGGATGTTGGAGATGCACACATTGGTGAGAAAAGAAGAGAAAAAGATTGGAGAACTTTGATTTTAATCTTCCATAAAAATCCACTTCCATTTTCTTTAATTTTTTATTTTAGTTTATTTTATATTATTTTAATATTTTAATATTATAATATCTTGATTTTCGTGCTCCTGTTTTTCCGTCATTTTGCTCCTCAATTTTACAACATTTCAAAAATTAATGTATATATGATCATTTTAGAAGAGCTTTTCTCAATATAAATATCACACCATCATTTTACTAGTTCACATTTTTCTACTAATCATTTTTATTAACTTATCAAAATTGCATTTTAAGGCAAAAAATTGCTAATCATTCTTGTACCTTTTCCTAAAAAAAAAATATAATAATGGTTCCTATATTTATCATATTTATTCTCCCAAACAAAAATATAAAAGAACACACTAAAATTAATAGTGTATCATACTCTCCCTTAATGCAAAACTAAAAAGTACAAATCGAATTGTGAATATTCAATAGAATTATTTTTCTTTGCACTTTTCTGAATTCTTTTTTTGAAGTAATATGGTTAGGTTTTGAAAAAATAAAGTGGATCTAACATAGAATACAAATATCAAGACGATGTTCTAATATGACGACTTCGCGTCTCAACCATTGAAGTCTGTATAATGACTTTGTCCTCTTCGCCTTACTTATTCCTTCGTCCTCTGAGCCTATCGGCATCTTATTCGCCTTTTCTCAAGAATGGAAAAAAAAAAAAAAAAGATCCTATTCTTTGAGAAGCAACAACATTCTCATCTTCCAAACATCTACATTTAGAGGTTCCATTTTGTGATCCTTGACAATCGTATGCGTTAATGCTGTAATCATATCAGCAACTATAGATCCAAAAGATTGTATCGCTACCATATCTGCATAACCTGGACTCTCATACCAGATGATAACAATCTTTAGCTGAAAGAAAGAACAAATTTCTAGGAATGTGCAGAGCTGAGACCTGCTCGTAGGGAAAATGGAATTTCCACAATGACTGCAAACCCCTTCTGATAACATTTGAGAATACAAATTTTTGTTGTACCCCAAAAATGGATTTTTGTTATAATAATTAGTGAAAAAAAAATGATTCTGGTGATAACAGACCAAAAAGGGCATGAGCTGTGGGCTTTTTTATAGATGTTGAAGAGGTGAGTAAGGGGTGAGAAGGTGCCCCTGGAGCTGGGGAAGTGAAAGTCGGACGTCTGGTGTTCCGTATCACTCATGATATATATACTAACTTGGGTACCCGTTTCAAATGCATATCCCATTTTTGCATAACAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTGTAGGGTCCCATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAACTCATCAAAAAAAGAAAAAATAATAAATAAACTATGTTGTGTAACTTGATTCCAAAAATGAAATGTTCTTTGAATCGCTGAAGAATGAATGACCTTATAATGCCCTTTATTTAAATTTTATTCCAACTAATTAGATTTTCTGTAGTGGGTTCATTCCTAGAAAATCTTGAATAAAAAGAAAAAAGTATAGCACTATCAGATCGCTCGAAACTAATTCAATATGCCTGGAACTTTTGAAGGGCAGTTCAATCACGTAATTTATACCTCGAACTGAACTGAACGAACTTGCCCTGCTCCTGTAGTTTAGGGCAATAGAGTTGACTTGCTTCTTACTAACGGCTGAATCATAAGCTCCAATAACCACCCTTCCTTTTTTTTTTTTTTAGTAATTTAAAAATACTATGATGGTTCTGTTGCTTTATTATTTGGTTAGTTATTCAGCAATCCCAAAGTTTCTTTTTTTTCCTTAAAACTAAATATTTCGTAGTCTTTCATAACAGAACTCATTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGTGGGGGTTTTCGAGGAATACAAATAACTCTGGGTTTTTTCAGCTGTGACGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACCGCAATTGGTCATCGAAGAGAAGCAAATGAAAGGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCATATCATGAATTAGTAACTGCATCCAATCTCCAAAAAAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCAAAATGATCTATGGATTGATCAGAAGATCCTTTCAATTAGCTAGAATCCGTTACTTGAACGAAACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAGCAATAA

mRNA sequence

ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGGGAAGACTCTGATCCTGTCACCTCCACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAACTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCCTTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAAACGAAGTTTGGTAGATCGAGAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTAACTCATTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAGCAATAA

Coding sequence (CDS)

ATGGTTGTGCAATGCTCGTTCAATATGTGCCTGTGGAGTAGGAGTATGAAGCCAAAAGCTCAACACCTCGAAGGTTCATTCAGGGGGAAGACTCTGATCCTGTCACCTCCACGACTTGAGGAAGAGCATATGGAACAAAACCACCTCCATGATCTTGTCGATTCACTAAATTGGCAACAAGTATCACTTGCTTTGGACAAAAAACAAACACATTATGGAACTATCACTGGCAACAACAAAGAAAGGATGATCTGGTGTCAGCTCAAGAACAACAATTTCAGGGTACATCCCATTAGGCACCCAAAGCCTAGGAGGATCACCATCATCTCCTTCTTTAGTACCCTAGCACTGAACATCGGGGTTCTTCAGCCCCTCAATCTGATCAAGTGTAAGAACTCTAGCACCACAAAGCTTAACACGTTCGAGTTCATCAATTCGAAACGAAGTTTGGTAGATCGAGAGGGTTATGAAAATCCACGAGAAGCAATCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTGCGTTCCAGTCACCCGGGGAAGAGTTGAGTTGTGCTTCCATCAATACAGAGCCAATTCCAATAGACTTATTAACTCATTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGCCCAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTGGGAAGTACGACTTGCGTCAAACTTGTGAAAGAATACTTGCAGCGCACCTCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTCAGAGAGTAGCTCTTCCCTTCTTTCTTTCAGGCAAGGAGGTCTCTCGAGCCTGCAGTTTGTTGCTATCGCCCGAGCAATAA

Protein sequence

MVVQCSFNMCLWSRSMKPKAQHLEGSFRGKTLILSPPRLEEEHMEQNHLHDLVDSLNWQQVSLALDKKQTHYGTITGNNKERMIWCQLKNNNFRVHPIRHPKPRRITIISFFSTLALNIGVLQPLNLIKCKNSSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVLAFQSPGEELSCASINTEPIPIDLLTHFSNYEAWLGDPTHIGPSAQIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVGSTTCVKLVKEYLQRTSVPPPPRTPVRFRHDTLFSYWENPSQRVALPFFLSGKEVSRACSLLLSPEQ
Homology
[Close]
BLAST of ClCG06G008920 vs. Swiss-Prot
Match: CYF_PANGI (Cytochrome f OS=Panax ginseng GN=petA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-12
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 144 INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 32  ISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. Swiss-Prot
Match: CYF_CARPA (Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWASISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. Swiss-Prot
Match: CYF_MANES (Cytochrome f OS=Manihot esculenta GN=petA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWASISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. Swiss-Prot
Match: CYF_JASNU (Cytochrome f OS=Jasminum nudiflorum GN=petA PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-12
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 144 INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           I+S   +  ++GYENPREA GRIVCANCHLANKPVD+EVPQAVL
Sbjct: 32  ISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDVEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. Swiss-Prot
Match: CYF_CUSEX (Cytochrome f OS=Cuscuta exaltata GN=petA PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-12
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 144 INSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           I+S   +  + GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 32  ISSAYPIFAQRGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. TrEMBL
Match: D3WER4_9ROSI (Cytochrome f OS=Oxalis latifolia GN=petA PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 122 LQPLNLIKCKNSSTTKLNTFEF---------INSKRSLVDREGYENPREAIGRIVCANCH 181
           +Q  N + C     T+  +  F         I+S   +  ++GYENPREA GRIVCANCH
Sbjct: 1   MQTKNTLFCIKEEITRFISISFMIYIISQTSISSAYPIFAQQGYENPREATGRIVCANCH 60

Query: 182 LANKPVDIEVPQAVL 188
           LANKPVDIEVPQAVL
Sbjct: 61  LANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. TrEMBL
Match: V5JEC9_LIQFO (Cytochrome f OS=Liquidambar formosana GN=petA PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 133 SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           S T  + T  +I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 21  SLTIYIITQTYISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. TrEMBL
Match: A0A0K0LDX6_BUPFA (Cytochrome f OS=Bupleurum falcatum GN=petA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWPSISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. TrEMBL
Match: A0A0K1Z9D1_9ASTE (Cytochrome f OS=Evolvulus nuttallianus GN=petA PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWTSISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. TrEMBL
Match: A0A097ZRR3_9LAMI (Cytochrome f OS=Genlisea margaretae GN=petA PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 30  TWTSISSAYPVFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 77

[Close]
BLAST of ClCG06G008920 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++ YENPREA GRIVCANCHLANKPVDIEVPQ VL
Sbjct: 28  TWASISSAYPIFAQQNYENPREATGRIVCANCHLANKPVDIEVPQTVL 75

[Close]
BLAST of ClCG06G008920 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-11
Identity = 32/33 (96.97%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 50

[Close]
BLAST of ClCG06G008920 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-11
Identity = 32/33 (96.97%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Sbjct: 18  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 50

[Close]
BLAST of ClCG06G008920 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-11
Identity = 32/33 (96.97%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGPSYLFLLRARV
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 49

[Close]
BLAST of ClCG06G008920 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-10
Identity = 31/33 (93.94%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 232 QIINSVVVVGLYYGFLTTFSIGPSYLFLLRARV 265
           +IINSVVVVGLYYGFLTTFSIGP YLFLLRARV
Sbjct: 17  KIINSVVVVGLYYGFLTTFSIGPFYLFLLRARV 49

[Close]
BLAST of ClCG06G008920 vs. NCBI nr
Match: gi|290489122|gb|ADD30945.1| (cytochrome f protein (chloroplast) [Oxalis latifolia])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 122 LQPLNLIKCKNSSTTKLNTFEF---------INSKRSLVDREGYENPREAIGRIVCANCH 181
           +Q  N + C     T+  +  F         I+S   +  ++GYENPREA GRIVCANCH
Sbjct: 1   MQTKNTLFCIKEEITRFISISFMIYIISQTSISSAYPIFAQQGYENPREATGRIVCANCH 60

Query: 182 LANKPVDIEVPQAVL 188
           LANKPVDIEVPQAVL
Sbjct: 61  LANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. NCBI nr
Match: gi|568244923|ref|YP_008963704.1| (cytochrome f (chloroplast) [Liquidambar formosana])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 133 SSTTKLNTFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           S T  + T  +I++   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 21  SLTIYIITQTYISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. NCBI nr
Match: gi|916439385|gb|AKZ22397.1| (cytochrome f (plastid) [Evolvulus nuttallianus])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWTSISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. NCBI nr
Match: gi|927372037|ref|YP_009164330.1| (PetA (chloroplast) [Bupleurum falcatum])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 28  TWPSISSAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 75

[Close]
BLAST of ClCG06G008920 vs. NCBI nr
Match: gi|723456756|ref|YP_009108449.1| (cytochrome f (chloroplast) [Genlisea margaretae])

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-10
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 140 TFEFINSKRSLVDREGYENPREAIGRIVCANCHLANKPVDIEVPQAVL 188
           T+  I+S   +  ++GYENPREA GRIVCANCHLANKPVDIEVPQAVL
Sbjct: 30  TWTSISSAYPVFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVL 77

The following BLAST results are available for this feature:
BLAST of ClCG06G008920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYF_PANGI4.7e-1277.27Cytochrome f OS=Panax ginseng GN=petA PE=3 SV=1[more]
CYF_CARPA4.7e-1270.83Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1[more]
CYF_MANES4.7e-1270.83Cytochrome f OS=Manihot esculenta GN=petA PE=3 SV=1[more]
CYF_JASNU6.1e-1275.00Cytochrome f OS=Jasminum nudiflorum GN=petA PE=3 SV=1[more]
CYF_CUSEX8.0e-1277.27Cytochrome f OS=Cuscuta exaltata GN=petA PE=3 SV=1[more]
BLAST of ClCG06G008920 vs. TrEMBL
Match NameE-valueIdentityDescription
D3WER4_9ROSI1.8e-1052.00Cytochrome f OS=Oxalis latifolia GN=petA PE=3 SV=1[more]
V5JEC9_LIQFO1.8e-1065.45Cytochrome f OS=Liquidambar formosana GN=petA PE=3 SV=1[more]
A0A0K0LDX6_BUPFA2.3e-1072.92Cytochrome f OS=Bupleurum falcatum GN=petA PE=3 SV=1[more]
A0A0K1Z9D1_9ASTE2.3e-1072.92Cytochrome f OS=Evolvulus nuttallianus GN=petA PE=3 SV=1[more]
A0A097ZRR3_9LAMI3.1e-1072.92Cytochrome f OS=Genlisea margaretae GN=petA PE=3 SV=1[more]
BLAST of ClCG06G008920 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00540.11.7e-1268.75ATCG00540.1 photosynthetic electron transfer A[more]
ATCG01130.15.5e-1196.97ATCG01130.1 Ycf1 protein[more]
ATCG01000.15.5e-1196.97ATCG01000.1 Ycf1 protein[more]
ATMG00370.15.5e-1196.97ATMG00370.1 Ycf1 protein[more]
AT2G07739.12.7e-1093.94 Ycf1 protein[more]
BLAST of ClCG06G008920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|290489122|gb|ADD30945.1|2.6e-1052.00cytochrome f protein (chloroplast) [Oxalis latifolia][more]
gi|568244923|ref|YP_008963704.1|2.6e-1065.45cytochrome f (chloroplast) [Liquidambar formosana][more]
gi|916439385|gb|AKZ22397.1|3.4e-1072.92cytochrome f (plastid) [Evolvulus nuttallianus][more]
gi|927372037|ref|YP_009164330.1|3.4e-1072.92PetA (chloroplast) [Bupleurum falcatum][more]
gi|723456756|ref|YP_009108449.1|4.4e-1072.92cytochrome f (chloroplast) [Genlisea margaretae][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001280PSI_PsaA/B
IPR002325Cyt_f
IPR008896TIC214
IPR024094Cyt_f_lg_dom
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009579thylakoid
GO:0016021integral component of membrane
GO:0031361integral component of thylakoid membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0020037heme binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G008920.1ClCG06G008920.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBGENE3DG3DSA:1.20.1130.10coord: 212..239
score: 6.
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 213..247
score: 2.3
IPR002325Cytochrome fPRINTSPR00610CYTOCHROMEFcoord: 156..175
score: 5.3E-12coord: 176..196
score: 5.3
IPR002325Cytochrome fPROFILEPS51010CYTFcoord: 147..209
score: 16
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 236..264
score: 5.8
IPR024094Cytochrome f large domainGENE3DG3DSA:2.60.40.830coord: 153..188
score: 1.6
IPR024094Cytochrome f large domainPFAMPF16639Apocytochr_F_Ncoord: 154..188
score: 2.2
IPR024094Cytochrome f large domainunknownSSF49441Cytochrome f, large domaincoord: 153..188
score: 9.29
NoneNo IPR availablePANTHERPTHR33288FAMILY NOT NAMEDcoord: 153..187
score: 1.0
NoneNo IPR availablePANTHERPTHR33288:SF3APOCYTOCHROME Fcoord: 153..187
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G008920Cucurbita pepo (Zucchini)cpewcgB338
ClCG06G008920Cucurbita pepo (Zucchini)cpewcgB617
ClCG06G008920Bottle gourd (USVL1VR-Ls)lsiwcgB377
ClCG06G008920Cucumber (Gy14) v2cgybwcgB366
ClCG06G008920Melon (DHL92) v3.6.1medwcgB247
ClCG06G008920Melon (DHL92) v3.6.1medwcgB248
ClCG06G008920Melon (DHL92) v3.6.1medwcgB250
ClCG06G008920Silver-seed gourdcarwcgB0040
ClCG06G008920Silver-seed gourdcarwcgB0126
ClCG06G008920Cucumber (Chinese Long) v3cucwcgB091
ClCG06G008920Watermelon (97103) v2wcgwmbB273
ClCG06G008920Wax gourdwcgwgoB543
ClCG06G008920Cucumber (Gy14) v1cgywcgB572
ClCG06G008920Cucurbita maxima (Rimu)cmawcgB070
ClCG06G008920Cucurbita maxima (Rimu)cmawcgB128
ClCG06G008920Cucurbita moschata (Rifu)cmowcgB063
ClCG06G008920Cucurbita moschata (Rifu)cmowcgB114
ClCG06G008920Wild cucumber (PI 183967)cpiwcgB087
ClCG06G008920Cucumber (Chinese Long) v2cuwcgB085
ClCG06G008920Melon (DHL92) v3.5.1mewcgB255
ClCG06G008920Melon (DHL92) v3.5.1mewcgB256
ClCG06G008920Melon (DHL92) v3.5.1mewcgB259
ClCG06G008920Watermelon (97103) v1wcgwmB344