ClCG06G008510 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G008510
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 12400233 .. 12400931 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTATAGAAGTACTTGAAAATTCCCAACTTTAAAAATTCGTTGGTTGCAAACTAACTTCTTGGATCCAAGTCAAACTTGCATTCTTTGCCAGAAATATTGAAAGTGCGCAGGTCCCAGTGTCAGCAGTTGATGATTTGCAGCTTCTACAATTCTCGCTCTCTTTTGAAGAATCATCCATCCACAGGGCATCTGCTTTGGCTTCGTCTCTTATTCAAACTCATGGTATGTACTATCAACTTCAACTAGCTTTTTCATCTTTCTTGATTCTTCAATTCCTTGTCTTTGTTTGATAACTACACGTAGGTATCTGATATTCAATACTTAGTTTTTTATATCCTCAACTGTCAGGTATTGAACAATGAATACTCTTTTCTTTTTTGGTCGCAGACTCTTACCCCCTTTCTGTTCAGGTCACTGGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGCAGCCTCTGTCTCAACCTTGCTTTTTTACAGTGACATTCTTCCTCAGCATATGGTTTCGGAGAGACTTGTTCGACATGAATTGCTCGATCGAGAAAACTACCTATTCCATTTTCTTGTTAGCTTTTTGAAGTGCTTTTGGTGAAGAAAGAAGAAGGAAGAAGAAGACGATGATGAGGAAAAGGGCACATCTTTTTCATAGACCCATCTCAATTTTTTCCCCTCGGGTTTATCCGGCTTTTCCC

mRNA sequence

ATGCATTATAGAAAAATATTGAAAGTGCGCAGGTCCCAGTGTCAGCAGTTGATGATTTGCAGCTTCTACAATTCTCGCTCTCTTTTGAAGAATCATCCATCCACAGGGCATCTGCTTTGGCTTCGTCTCTTATTCAAACTCATGACTCTTACCCCCTTTCTGTTCAGGTCACTGGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGCAGCCTCTGTCTCAACCTTGCTTTTTTACAGTGACATTCTTCCTCAGCATATGGTTTCGGAGAGACTTGTTCGACATGAATTGCTCGATCGAGAAAACTACCTATTCCATTTTCTTGTTAGCTTTTTGAAGTGCTTTTGGTGAAGAAAGAAGAAGGAAGAAGAAGACGATGATGAGGAAAAGGGCACATCTTTTTCATAGACCCATCTCAATTTTTTCCCCTCGGGTTTATCCGGCTTTTCCC

Coding sequence (CDS)

ATGCATTATAGAAAAATATTGAAAGTGCGCAGGTCCCAGTGTCAGCAGTTGATGATTTGCAGCTTCTACAATTCTCGCTCTCTTTTGAAGAATCATCCATCCACAGGGCATCTGCTTTGGCTTCGTCTCTTATTCAAACTCATGACTCTTACCCCCTTTCTGTTCAGGTCACTGGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGCAGCCTCTGTCTCAACCTTGCTTTTTTACAGTGACATTCTTCCTCAGCATATGGTTTCGGAGAGACTTGTTCGACATGAATTGCTCGATCGAGAAAACTACCTATTCCATTTTCTTGTTAGCTTTTTGAAGTGCTTTTGGTGA

Protein sequence

MHYRKILKVRRSQCQQLMICSFYNSRSLLKNHPSTGHLLWLRLLFKLMTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFLVSFLKCFW

Homology

[Close]

BLAST of ClCG06G008510 vs. TrEMBL
Match: A0A0A0LTU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366970 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M LTPFLFRSLVRLLLSLIVQP ASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF
Sbjct: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60

Query: 108 LVSFLKCFW 117
           LV+FLKCFW
Sbjct: 61  LVNFLKCFW 69

[Close]

BLAST of ClCG06G008510 vs. TrEMBL
Match: A0A059CMT8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01044 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.2e-23
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 28  LLKNHPSTGHLLWLRLLFKLMTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHM 87
           LL  H    HLL   L    M+LT  +FRSLVRL+ SL+  PAASV+T+L+YS +LPQ +
Sbjct: 15  LLTRHSIANHLLLGLLFISAMSLTTLMFRSLVRLVTSLVGDPAASVTTILYYSTLLPQSV 74

Query: 88  VSERLVRHELLDRENYLFHFLVSFLKCFW 117
           V ERLVRHELLD ENYLFHFLV+FL+CFW
Sbjct: 75  VLERLVRHELLDHENYLFHFLVNFLRCFW 103

[Close]

BLAST of ClCG06G008510 vs. TrEMBL
Match: D7TBP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 51/69 (73.91%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M+LTP +FRSLVRL+ SL+ QPAAS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 71  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 130

Query: 108 LVSFLKCFW 117
           L++FL+CFW
Sbjct: 131 LINFLRCFW 139

[Close]

BLAST of ClCG06G008510 vs. TrEMBL
Match: A0A0D2SNW9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070600 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-21
Identity = 49/68 (72.06%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M+LTP LFRSL+RLL+SL+ +PAASV+TLL+YSD LPQ+++ ERLVRHE+LD+ENYLFHF
Sbjct: 1   MSLTPLLFRSLLRLLMSLLTEPAASVATLLYYSDNLPQNIIWERLVRHEMLDQENYLFHF 60

Query: 108 LVSFLKCF 116
           L++FL+CF
Sbjct: 61  LINFLRCF 68

[Close]

BLAST of ClCG06G008510 vs. TrEMBL
Match: V4UJH5_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010772mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 40/69 (57.97%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M+LTP +FRS+VRL+ S++ +PA SV+T+L+YS++LP ++  ER+VR +LL RENYLFHF
Sbjct: 29  MSLTPLMFRSVVRLVTSIVDEPAVSVTTILYYSELLPHNIFLERMVRRQLLGRENYLFHF 88

Query: 108 LVSFLKCFW 117
           +++FL+CFW
Sbjct: 89  IINFLRCFW 97

[Close]

BLAST of ClCG06G008510 vs. NCBI nr
Match: gi|700210254|gb|KGN65350.1| (hypothetical protein Csa_1G366970 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 7.3e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M LTPFLFRSLVRLLLSLIVQP ASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF
Sbjct: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60

Query: 108 LVSFLKCFW 117
           LV+FLKCFW
Sbjct: 61  LVNFLKCFW 69

[Close]

BLAST of ClCG06G008510 vs. NCBI nr
Match: gi|629115017|gb|KCW79692.1| (hypothetical protein EUGRSUZ_C01044 [Eucalyptus grandis])

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 28  LLKNHPSTGHLLWLRLLFKLMTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHM 87
           LL  H    HLL   L    M+LT  +FRSLVRL+ SL+  PAASV+T+L+YS +LPQ +
Sbjct: 15  LLTRHSIANHLLLGLLFISAMSLTTLMFRSLVRLVTSLVGDPAASVTTILYYSTLLPQSV 74

Query: 88  VSERLVRHELLDRENYLFHFLVSFLKCFW 117
           V ERLVRHELLD ENYLFHFLV+FL+CFW
Sbjct: 75  VLERLVRHELLDHENYLFHFLVNFLRCFW 103

[Close]

BLAST of ClCG06G008510 vs. NCBI nr
Match: gi|297738835|emb|CBI28080.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 51/69 (73.91%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M+LTP +FRSLVRL+ SL+ QPAAS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 71  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 130

Query: 108 LVSFLKCFW 117
           L++FL+CFW
Sbjct: 131 LINFLRCFW 139

[Close]

BLAST of ClCG06G008510 vs. NCBI nr
Match: gi|731406947|ref|XP_002281062.2| (PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 51/69 (73.91%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M+LTP +FRSLVRL+ SL+ QPAAS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 72  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 131

Query: 108 LVSFLKCFW 117
           L++FL+CFW
Sbjct: 132 LINFLRCFW 140

[Close]

BLAST of ClCG06G008510 vs. NCBI nr
Match: gi|763797938|gb|KJB64893.1| (hypothetical protein B456_010G070600 [Gossypium raimondii])

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 49/68 (72.06%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 48  MTLTPFLFRSLVRLLLSLIVQPAASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 107
           M+LTP LFRSL+RLL+SL+ +PAASV+TLL+YSD LPQ+++ ERLVRHE+LD+ENYLFHF
Sbjct: 1   MSLTPLLFRSLLRLLMSLLTEPAASVATLLYYSDNLPQNIIWERLVRHEMLDQENYLFHF 60

Query: 108 LVSFLKCF 116
           L++FL+CF
Sbjct: 61  LINFLRCF 68

The following BLAST results are available for this feature:

BLAST of ClCG06G008510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU9_CUCSA	5.1e-29	95.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366970 PE=4 SV=1	[more]
A0A059CMT8_EUCGR	7.2e-23	62.92	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01044 PE=4 SV=1	[more]
D7TBP5_VITVI	1.2e-22	73.91	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=...	[more]
A0A0D2SNW9_GOSRA	3.9e-21	72.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070600 PE=4 SV=1	[more]
V4UJH5_9ROSI	1.2e-17	57.97	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010772mg PE=...	[more]

BLAST of ClCG06G008510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210254\|gb\|KGN65350.1\|	7.3e-29	95.65	hypothetical protein Csa_1G366970 [Cucumis sativus]	[more]
gi\|629115017\|gb\|KCW79692.1\|	1.0e-22	62.92	hypothetical protein EUGRSUZ_C01044 [Eucalyptus grandis]	[more]
gi\|297738835\|emb\|CBI28080.3\|	1.8e-22	73.91	unnamed protein product [Vitis vinifera]	[more]
gi\|731406947\|ref\|XP_002281062.2\|	1.8e-22	73.91	PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]	[more]
gi\|763797938\|gb\|KJB64893.1\|	5.6e-21	72.06	hypothetical protein B456_010G070600 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G008510.1	ClCG06G008510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37900	FAMILY NOT NAMED	coord: 49..116 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G008510	Cla97C06G118240	Watermelon (97103) v2	wcgwmbB273
ClCG06G008510	CmoCh11G006090	Cucurbita moschata (Rifu)	cmowcgB114

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G008510	Wild cucumber (PI 183967)	cpiwcgB590
ClCG06G008510	Melon (DHL92) v3.5.1	mewcgB255
ClCG06G008510	Watermelon (97103) v1	wcgwmB344
ClCG06G008510	Cucurbita pepo (Zucchini)	cpewcgB304
ClCG06G008510	Cucurbita pepo (Zucchini)	cpewcgB338
ClCG06G008510	Cucurbita pepo (Zucchini)	cpewcgB617
ClCG06G008510	Bottle gourd (USVL1VR-Ls)	lsiwcgB377
ClCG06G008510	Melon (DHL92) v3.6.1	medwcgB247
ClCG06G008510	Silver-seed gourd	carwcgB0040
ClCG06G008510	Silver-seed gourd	carwcgB0126
ClCG06G008510	Cucumber (Chinese Long) v3	cucwcgB589
ClCG06G008510	Watermelon (97103) v2	wcgwmbB283
ClCG06G008510	Wax gourd	wcgwgoB537
ClCG06G008510	Wax gourd	wcgwgoB543
ClCG06G008510	Watermelon (Charleston Gray)	wcgwcgB031
ClCG06G008510	Cucumber (Gy14) v1	cgywcgB613
ClCG06G008510	Cucurbita maxima (Rimu)	cmawcgB070
ClCG06G008510	Cucurbita maxima (Rimu)	cmawcgB128
ClCG06G008510	Cucurbita moschata (Rifu)	cmowcgB063